BAC Information

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BAC

Clone NameB6Ng01-099C21
Chromosome1 (Build37)4 (Build37)
Map Location 63,085,067 - 63,085,71146,208,224 - 46,208,340
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePard3b, LOC667592, Nrp2, LOC100043070
Downstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099C21.bB6Ng01-099C21.g
ACCDH909045DH909046
length988370
definitionDH909045|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C21, 5' end.DH909046|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,085,067 - 63,085,711)(46,208,224 - 46,208,340)
sequence
gaattcaccagttggctctatagtataagactaagcgggtgctcccaccc
aattggatatatgagatgagttgtccacagcctctgctctaaaggcataa
atgctgttgtatgcacaagcaataaaatcactttgaggaaaaaaaaaaaa
agagttgcattggtcatggtgtcttttcacagcaatggaaaccctaacta
ggacaggagggatagtaacactaagggcatttgaacaagtcatatggaac
cctactattttataatgcatataatgcatagcttatatataatacatata
aagccaggtggtggtagtgcatgcttttaatcctagcacctgaaaggcag
aggcaggtggatctctgtaagtgtgaggccagcccagtctacagagtgag
ttccaagatagccaaggctactcaagaaaccctgtctcaaaataacaaaa
accaattaatcaatcaattaattaatacatagaaaagagttaaattggag
ttattctacaaaggggataattacttgtactcccacaagtcataggttgc
caaataaaaagcctgatcaacactgggctagagagatggttcagaagtta
ggagcacgggctgctctgccagatgacctcagtttgatccctgcatccac
acagtagtagctcaggtagctcagaagatctgacgcctctcttctggcct
ctgtgggcactgcatacacagtgtgcgcagaaatcaatgcaagtaaaaca
cccaaacacataaaaaaaagcaaagcaaaaatgcagtggcagatgtggaa
taaaagcctagtgctaggcatgagacacctactctcaagttgttgcccta
ggatgagtggagacctggagacccctccaaacaatacaggctattgccat
tgctctttttgctccttctatggctgagacacaatagactttggtcctag
acagggagaatcagtggtactgatcaggagcttctctc
tggtcttcatgcatacatagctagcacttatctcctaaaccatctcccca
gccccgcaaaacagttgtttttggatttattttatatgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtatacacatatatatgtatatacaca
tacacatatatgtatatacacatgtatatatgtatgtgtgtgtatctatc
tatttgtctgtctgtctgtctatctatatctatatgaatctaagttatgt
atgagccctatgtgtatgcaggtgcttgaagaagccagaagacggcattg
aatcctttgaaattagagttggatagtgataagccgccacgtgggtgctg
ggaaccaaactcaggttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_63085067_63085711
seq2: B6Ng01-099C21.b_48_692

seq1  GAATTCACCAGTTGGCTCTATAGTATAAGACTAAGCGGGTGCTCCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGTTGGCTCTATAGTATAAGACTAAGCGGGTGCTCCCACCC  50

seq1  AATTGGATATATGAGATGAGTTGTCCACAGCCTCTGCTCTAAAGGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATATATGAGATGAGTTGTCCACAGCCTCTGCTCTAAAGGCATAA  100

seq1  ATGCTGTTGTATGCACAAGCAATAAAATCACTTTGAGGAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTGTATGCACAAGCAATAAAATCACTTTGAGGAAAAAAAAAAAA  150

seq1  AGAGTTGCATTGGTCATGGTGTCTTTTCACAGCAATGGAAACCCTAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCATTGGTCATGGTGTCTTTTCACAGCAATGGAAACCCTAACTA  200

seq1  GGACAGGAGGGATAGTAACACTAAGGGCATTTGAACAAGTCATATGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAGGGATAGTAACACTAAGGGCATTTGAACAAGTCATATGGAAC  250

seq1  CCTACTATTTTATAATGCATATAATGCATAGCTTATATATAATACATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTATTTTATAATGCATATAATGCATAGCTTATATATAATACATATA  300

seq1  AAGCCAGGTGGTGGTAGTGCATGCTTTTAATCCTAGCACCTGAAAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGTGGTGGTAGTGCATGCTTTTAATCCTAGCACCTGAAAGGCAG  350

seq1  AGGCAGGTGGATCTCTGTAAGTGTGAGGCCAGCCCAGTCTACAGAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGATCTCTGTAAGTGTGAGGCCAGCCCAGTCTACAGAGTGAG  400

seq1  TTCCAAGATAGCCAAGGCTACTCAAGAAACCCTGTCTCAAAATAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGATAGCCAAGGCTACTCAAGAAACCCTGTCTCAAAATAACAAAA  450

seq1  ACCAATTAATCAATCAATTAATTAATACATAGAAAAGAGTTAAATTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTAATCAATCAATTAATTAATACATAGAAAAGAGTTAAATTGGAG  500

seq1  TTATTCTACAAAGGGGATAATTACTTGTACTCCCACAAGTCATAGGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTACAAAGGGGATAATTACTTGTACTCCCACAAGTCATAGGTTGC  550

seq1  CAAATAAAAAGCCTGATCAACACTGGGCTAGAGAGATGGTTCAGAAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAAAGCCTGATCAACACTGGGCTAGAGAGATGGTTCAGAAGTTA  600

seq1  GGAGCACGGGCTGCTCTGCCAGATGACCTCAGTTTGATCCCTGCA  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACGGGCTGCTCTGCCAGATGACCTCAGTTTGATCCCTGCA  645

seq1: chr4_46208224_46208340
seq2: B6Ng01-099C21.g_153_263 (reverse)

seq1  ACACACACATATGTGTGTGTATATATATATAAATATATACATACA----T  46
      |||||||||||         ||||||| ||   |||||||||| |    |
seq2  ACACACACATA--------CATATATACATGTGTATATACATATATGTGT  42

seq1  ATGTGTGTATATGTATATATGTATATACATACACACACACACACACACAC  96
      |||||| ||||  ||||||||| |||||  ||||||||||||||||||||
seq2  ATGTGTATATACATATATATGTGTATAC--ACACACACACACACACACAC  90

seq1  ACACACACACACACACATATA  117
      |||||||||||||||||||||
seq2  ACACACACACACACACATATA  111