BAC Information

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BAC

Clone NameB6Ng01-099E20
Chromosome4 (Build37)
Map Location 51,238,481 - 51,439,795
singlet/doubletdoublet
Overlap geneLOC100040814
Upstream geneLOC100040979, LOC666681
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099E20.bB6Ng01-099E20.g
ACCDH909136DH909137
length1,098400
definitionDH909136|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E20, 5' end.DH909137|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,238,481 - 51,239,587)(51,439,390 - 51,439,795)
sequence
gaattcaaaaataaatgagagctggaacataagtattttcaaaatcattg
gagtagttcttggttaaagaaattttgcctaaaaaatgaataatcatctt
tttattttagagtgaatcccttcaattatgatcaacgtttatttttcttt
tttattttgctctatcatttattgttcatctttcctttaaaaatagcaat
ttgtcatttaattattacaaatacttggatagaagttgaaaatatttata
atatatgtaactatagtaggctatgctttaactgatgatagtctatatca
agtctaggacttacagggttgtgcctataactgtagttagcattataaag
tgcagaaaataacattataggttgagatatgctgaaataaaacattttat
ctcagagaataactagttgttaaatttcatcaagaaacagcatgtaccca
cttctcaaaaaaacaaaacaaaacaaaacaaaaacacaacacacacacac
acacacacacacacacacacacacacacacacacacacacaaagctacta
aaaatttaaaaattagcctctcctaataatgtgaagaggtttcaatgtgt
cataggcctgtggacaattctactaaattttaacataaaatcttaaagaa
agattttggcccttttaaatttaaaataaatcacaagcaagggatgcaat
tgtcctttactctaaattataacgaaattcaaagttgaaataaaccttaa
aattcacaatttatccactttttacaatatatatattggatttctttttt
ttttaattaggtattttcctcatttacatttttcaatgctatcccaaagg
tcccccatatccagccccccaatcccctacccacccactccccctttttg
gccctggcgttcccctgtactggggcatctaaagttggcaagtccaatgg
gcctctctttgcagtgatggccgactaggccatcttttgatgcatatgca
gctagagacagagctccgggtactggttagttcatattgtgtcacttata
gatgcagttcctttagctccttggtaattccctagctcttgcatgggg
aatttggagcacaaatggaagccagaaaattaggatgaggcctttgcaga
gagatgtggacaagtttttgagggaggagcaatgcattagggataaagtg
aaagtagtgaggcagatgctgaggcctacaaacttatgagggagaagcct
ggaaataataggggaaatcaggccatgaaagcaaagactaaatcaaagaa
agcaaacattaaaattcctatgtaagcttactatctcacaatgcaattaa
aaaatgattctgtgaaagtatagtgaagaaaacaaaatactgaggaagag
aaagaaaaacaaatgtgaagaaaaagaagggatgtatgcataaaggataa
aacagaagcagagggagaggatgtgaggtagaggagtgagtagtgggaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_51238481_51239587
seq2: B6Ng01-099E20.b_43_1140

seq1  GAATTCAAAAATAAATGAGAGCTGGAACATAAGTATTTTCAAAATCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAATAAATGAGAGCTGGAACATAAGTATTTTCAAAATCATTG  50

seq1  GAGTAGTTCTTGGTTAAAGAAATTTTGCCTAAAAAATGAATAATCATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTCTTGGTTAAAGAAATTTTGCCTAAAAAATGAATAATCATCTT  100

seq1  TTTATTTTAGAGTGAATCCCTTCAATTATGATCAACGTTTATTTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAGAGTGAATCCCTTCAATTATGATCAACGTTTATTTTTCTTT  150

seq1  TTTATTTTGCTCTATCATTTATTGTTCATCTTTCCTTTAAAAATAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGCTCTATCATTTATTGTTCATCTTTCCTTTAAAAATAGCAAT  200

seq1  TTGTCATTTAATTATTACAAATACTTGGATAGAAGTTGAAAATATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTAATTATTACAAATACTTGGATAGAAGTTGAAAATATTTATA  250

seq1  ATATATGTAACTATAGTAGGCTATGCTTTAACTGATGATAGTCTATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTAACTATAGTAGGCTATGCTTTAACTGATGATAGTCTATATCA  300

seq1  AGTCTAGGACTTACAGGGTTGTGCCTATAACTGTAGTTAGCATTATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGACTTACAGGGTTGTGCCTATAACTGTAGTTAGCATTATAAAG  350

seq1  TGCAGAAAATAACATTATAGGTTGAGATATGCTGAAATAAAACATTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAATAACATTATAGGTTGAGATATGCTGAAATAAAACATTTTAT  400

seq1  CTCAGAGAATAACTAGTTGTTAAATTTCATCAAGAAACAGCATGTACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAATAACTAGTTGTTAAATTTCATCAAGAAACAGCATGTACCCA  450

seq1  CTTCTCAAAAAAACAAAACAAAACAAAACAAAAACACAACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAAAAAACAAAACAAAACAAAACAAAAACACAACACACACACAC  500

seq1  ACACACACACACACACACACACACACACACACACACACACAAAGCTACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACAAAGCTACTA  550

seq1  AAAATTTAAAAATTAGCCTCTCCTAATAATGTGAAGAGGTTTCAATGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAAATTAGCCTCTCCTAATAATGTGAAGAGGTTTCAATGTGT  600

seq1  CATAGGCCTGTGGACAATTCTACTAAATTTTAACATAAAATCTTAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCCTGTGGACAATTCTACTAAATTTTAACATAAAATCTTAAAGAA  650

seq1  AGATTTTGGCCCTTTTAAATTTAAAATAAATCACAAGCAAGGGATGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGGCCCTTTTAAATTTAAAATAAATCACAAGCAAGGGATGCAAT  700

seq1  TGTCCTTTACTCTAAATTATAACGAAATTCAAAGTTGAAATAAACCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTACTCTAAATTATAACGAAATTCAAAGTTGAAATAAACCTTAA  750

seq1  AATTCACAATTTATCCACTTTTTACAATATATATATTGGATTTC-TTTTT  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTCACAATTTATCCACTTTTTACAATATATATATTGGATTTCTTTTTT  800

seq1  TTTTAATTAGGTATTTTCCTCATTTACA-TTTTCAATGCTATCCCAAAGG  848
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTAATTAGGTATTTTCCTCATTTACATTTTTCAATGCTATCCCAAAGG  850

seq1  TCCCCCATATCCAGCCCCCCAATCCCCTACCCACCCACTCCCCCTTTTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATATCCAGCCCCCCAATCCCCTACCCACCCACTCCCCCTTTTTG  900

seq1  GCCCTGGCGTTCCCCTGTACTGGGGCATCTAAAGTTGGCAAGTCCAATGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCGTTCCCCTGTACTGGGGCATCTAAAGTTGGCAAGTCCAATGG  950

seq1  GCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATGCATATGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATGCATATGCA  1000

seq1  GCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCAC  1048
      ||||||||| |||||||| |||||||||||||||||||||| |||  |||
seq2  GCTAGAGAC-AGAGCTCC-GGGTACTGGTTAGTTCATATTG-TGT--CAC  1045

seq1  TTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTAATATCTCTAGCTCCT  1098
      |||||  | ||||||| ||||||||||||| |||||| || ||||||| |
seq2  TTATA--GATGCAGTT-CCTTTAGCTCCTT-GGTAAT-TCCCTAGCTCTT  1090

seq1  GCATTGGGG  1107
      |||| ||| 
seq2  GCATGGGG-  1098

seq1: chr4_51439390_51439795
seq2: B6Ng01-099E20.g_67_472 (reverse)

seq1  TCTCCCACTACTCACTCCTCTACCTCACATCCTCTCCCTCTGCTTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACTACTCACTCCTCTACCTCACATCCTCTCCCTCTGCTTCTGTT  50

seq1  TTATCCTTTATGCATACATCCCTTCTTTTTCTTCACATTTGTTTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTTATGCATACATCCCTTCTTTTTCTTCACATTTGTTTTTCTTT  100

seq1  CTCTTCCTCAGTATTTTGTTTTCTTCACTATACTTTCACAGAATCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCAGTATTTTGTTTTCTTCACTATACTTTCACAGAATCATTTT  150

seq1  TTAATTGCATTGTGAGATAGTAAGCTTACATAGGAATTTTAATGTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCATTGTGAGATAGTAAGCTTACATAGGAATTTTAATGTTTGCT  200

seq1  TTCTTTGATTTAGTCTTTGCTTTCATGGCCTGATTTCCCCTATTATTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGATTTAGTCTTTGCTTTCATGGCCTGATTTCCCCTATTATTTCC  250

seq1  AGGCTTCTCCCTCATAAGTTTGTAGGCCTCAGCATCTGCCTCACTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTCCCTCATAAGTTTGTAGGCCTCAGCATCTGCCTCACTACTTT  300

seq1  CACTTTATCCCTAATGCATTGCTCCTCCCTCAAAAACTTGTCCACATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATCCCTAATGCATTGCTCCTCCCTCAAAAACTTGTCCACATCTC  350

seq1  TCTGCAAAGGCCTCATCCTAATTTTCTGGCTTCCATTTGTGCTCCAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAGGCCTCATCCTAATTTTCTGGCTTCCATTTGTGCTCCAAATT  400

seq1  GAATTC  406
      ||||||
seq2  GAATTC  406