BAC Information

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BAC

Clone NameB6Ng01-099H10
ChromosomeY (Build37)4 (Build37)
Map Location 1,870,346 - 1,870,46816,956,298 - 16,957,447
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099H10.bB6Ng01-099H10.g
ACCDH909248DH909249
length5001,134
definitionDH909248|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H10, 5' end.DH909249|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,468)(16,956,298 - 16,957,447)
sequence
gaattccaggattccagacactatccctggcctacccttgagcctgattt
aagaaacccaaattttgttaaacacatgaaactcaagaagaatgaagatt
gaagtgtggacactatgcccctccttagaattgggaacaaaacacccatg
gaaggagttacagagacaaagtttggagctgagatgtagagactgccata
tccagggatccaccccataatcagcatccaaatgctgacaccattgcata
cactagcaagattttattgaaaggacccagatgtagctgtctcttgtgag
actatgccggggcctagcacagaagtggatgctcacagtcagctaatgga
tggatcacagggctcccaatggaggagctagagaaagtagccaaggagct
aaagggatctgcaaccctataggtggaacaacattatgaactaaccagta
ccccggagctcttgactctagctgcatatgtatcaaaagatggcctagtc

gaattctaacttgagtattttttatgattacaatagacatttttaaaatt
tactgtttatattttcttgcacaatgaatataaatacttctttcatggca
caggctaaaaacttatgtggacttttgttaatgaaatgaaaaatatactt
ttgtattgaaattgtaagtggtctattctttgtgatttttaacacatgaa
ttaactccaaatagccatttgtgagtgtgtgtgtgtttatgtgtgtgtgt
ataatcaaatactagttttcacaatacatttggatcaatgtctaaaatag
tgtgattcaagtatttttctatggataacaattgtcttatttatttgtgg
aaaagtagtttacttatccgggttatcagattttctatagaattaattgc
tatgctgtttgttgtgtagtgtgtgtgtaaagttctcttatctatttgtt
cctttggatttggtaacatactgtctggattattacaactgtagaacaaa
ggagtcttcagtagaatctcaggtcatttagatcagtggttcttaatctt
gttcaggttgtggtaatccactaccataaaattagtttgttactattcca
tgaatataattttgatacccttatgaatcataatttaaatatcttttatc
caggatatttaatatatgacctctatgaaaagggtcatgacccaaaggta
aaaaaattactattctaggatgcttatcagtaagacttaagttagcagac
cttctccccaacccagagacagcttgactcccaggtgctctgatacaacc
aggctcactgaagacacacctatggacatagatcatatctaccctgccct
ggtagagacatatcttccttccatctcaaaatttggcctggggcagggcc
aacactctagataccctctcatacccaaagacagcttactccatgaactc
catcacaccagactcagaggatcacaaaagtggcaggatccattcagaga
cagcaagtcagttaactttgatataagcacatggtgaaagcagtgcaaga
actatgtaactaaatccatgccactttgaccatcgaactcacttctcctc
caagcatgccctaatccctaacacctgaaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870468
seq2: B6Ng01-099H10.b_422_544

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTC  123
      | |||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTC  123

seq1: chr4_16956298_16957447
seq2: B6Ng01-099H10.g_68_1201

seq1  GAATTCTAACTTGAGTATTTTTTATGATTACAATAGACATTTTTAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTTGAGTATTTTTTATGATTACAATAGACATTTTTAAAATT  50

seq1  TACTGTTTATATTTTCTTGCACAATGAATATAAATACTTCTTTCATGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTATATTTTCTTGCACAATGAATATAAATACTTCTTTCATGGCA  100

seq1  CAGGCTAAAAACTTATGTGGACTTTTGTTAATGAAATGAAAAATATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAAAAACTTATGTGGACTTTTGTTAATGAAATGAAAAATATACTT  150

seq1  TTGTATTGAAATTGTAAGTGGTCTATTCTTTGTGATTTTTAACACATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGAAATTGTAAGTGGTCTATTCTTTGTGATTTTTAACACATGAA  200

seq1  TTAACTCCAAATAGCCATTTGTGAGTGTGTGTGTGTTTATGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCAAATAGCCATTTGTGAGTGTGTGTGTGTTTATGTGTGTGTGT  250

seq1  ATAATCAAATACTAGTTTTCACAATACATTTGGATCAATGTCTAAAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAATACTAGTTTTCACAATACATTTGGATCAATGTCTAAAATAG  300

seq1  TGTGATTCAAGTATTTTTCTATGGATAACAATTGTCTTATTTATTTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCAAGTATTTTTCTATGGATAACAATTGTCTTATTTATTTGTGG  350

seq1  AAAAGTAGTTTACTTATCCGGGTTATCAGATTTTCTATAGAATTAATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGTTTACTTATCCGGGTTATCAGATTTTCTATAGAATTAATTGC  400

seq1  TATGCTGTTTGTTGTGTAGTGTGTGTGTAAAGTTCTCTTATCTATTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTTTGTTGTGTAGTGTGTGTGTAAAGTTCTCTTATCTATTTGTT  450

seq1  CCTTTGGATTTGGTAACATACTGTCTGGATTATTACAACTGTAGAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGATTTGGTAACATACTGTCTGGATTATTACAACTGTAGAACAAA  500

seq1  GGAGTCTTCAGTAGAATCTCAGGTCATTTAGATCAGTGGTTCTTAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTTCAGTAGAATCTCAGGTCATTTAGATCAGTGGTTCTTAATCTT  550

seq1  GTTCAGGTTGTGGTAATCCACTACCATAAAATTAGTTTGTTACTATTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGTTGTGGTAATCCACTACCATAAAATTAGTTTGTTACTATTCCA  600

seq1  TGAATATAATTTTGATACCCTTATGAATCATAATTTAAATATCTTTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAATTTTGATACCCTTATGAATCATAATTTAAATATCTTTTATC  650

seq1  CAGGATATTTAATATATGACCTCTATG-AAAGGGTCATGACCCAAAGGTA  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGGATATTTAATATATGACCTCTATGAAAAGGGTCATGACCCAAAGGTA  700

seq1  AAAAAATTACTATTCTAGGATGCTTATCAGTAAGACTTAAGTTAGCAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTACTATTCTAGGATGCTTATCAGTAAGACTTAAGTTAGCAGAC  750

seq1  CTTCTCCCCAACCCAGAGACAGCTTGACTCCCAGGTGCTCTGATACAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCCAACCCAGAGACAGCTTGACTCCCAGGTGCTCTGATACAACC  800

seq1  AGGCTCACTGAAGACACACCTATGGACATAGATCATATCTACCCTGCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACTGAAGACACACCTATGGACATAGATCATATCTACCCTGCCCT  850

seq1  GGTAGAGACATATCTTCCTTCCATCTCAAAATTTGGCCTGGGGCAGGGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGACATATCTTCCTTCCATCTCAAAATTTGGCCTGGGGCAGGGCC  900

seq1  AACACTCTAGATACCCTCTCATACCCAAAGACAGCTTAACTCCCATGAAC  949
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  AACACTCTAGATACCCTCTCATACCCAAAGACAGCTT-ACT-CCATGAAC  948

seq1  TCCATCACAACCAGACTCAGAGGATCACAAAAGTGGCAGGATCCATTCAG  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAC-ACCAGACTCAGAGGATCACAAAAGTGGCAGGATCCATTCAG  997

seq1  AGACAGCAAGGCCAGTTAACAATTGATATAAGCACATGGTGAGAGGCAAG  1049
      ||||||||| | ||||||||  |||||||||||||||||||| ||   ||
seq2  AGACAGCAA-GTCAGTTAAC-TTTGATATAAGCACATGGTGAAAG--CAG  1043

seq1  TGCAAGAACATATGAAACAGAAACCAATGCCACTTGGCACCATCAGAACT  1099
      ||||||||| |||| |||  ||| | ||||||||| | |||||| |||||
seq2  TGCAAGAAC-TATGTAAC-TAAATCCATGCCACTTTG-ACCATC-GAACT  1089

seq1  CAGCTCCTCCACCACAGCAAGCCCTGAATACCCTAACACACCTGAAAAGT  1149
      || || |||| ||| |||| ||||| ||| |||||  |||||||||||||
seq2  CA-CTTCTCCTCCA-AGCATGCCCT-AAT-CCCTA--ACACCTGAAAAGT  1133

seq1  A  1150
      |
seq2  A  1134