BAC Information

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BAC

Clone NameB6Ng01-099J06
Chromosome4 (Build37)1 (Build37)
Map Location 36,924,867 - 36,925,326174,664,794 - 174,665,350
singlet/doubletsingletsinglet
Overlap geneLOC100042132
Upstream genenone
Downstream geneLOC545600, LOC621458, LOC277771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099J06.bB6Ng01-099J06.g
ACCDH909336DH909337
length454896
definitionDH909336|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J06, 5' end.DH909337|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,924,867 - 36,925,326)(174,664,794 - 174,665,350)
sequence
atataattcatcctttttctttgtttataacaatttatacatctacaaca
cagctctacacctatagcactagaaactgcatagaaagcaggcagaaaga
ttgtaagggtcacaagagcagaacatttgctggtagatagtatctcacag
gtatgacagaaatgctacacccataaaatattaccaatatgattgtctaa
ataagacctttatagtgataaaaaattgacatcttataagatctttatac
tttaaaaaaaaaaaaaaactgacatcttagtgtggatgggggaaattgca
caagttctaccctaaatgctataggtatttaatgacccttgaaagaagga
atatatgtacataacaccagggatacattgactcagtggtgtgagtgtgc
gcatgcacatgcgtgcatttgtgtgtatgtgtgtgtgtgtgtgtgtgtgt
gtga
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tgaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcctt
gagtttgtttatataatggattacattgatggattttcatatattaaatc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattatggcttcatagaatgagtta
agtagagttccctctacttctattttgtggaatagtttgtgcagaactgg
gattagatcttctttgaaggtctggtagaactctgcactaaaaccatctg
gtcctggactttttttggctgggagactattaatgactgcttctatttct
ttaggggatatgggactgtttagatcgttaacttgatcctgatttaactt
tggtacctggtatccgtctagaaatttgtccatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctccctttgcatttctgattttgttaat
taggattttgtccctgtgccctctagtgagcctaactaaagggtttatct
accttgttgattttctcaaagaaccagctccttgttgggttaattctttg
aatagttcttcatgtttccacttggttgatttcaccctagtttgattatt
tcctgccattactcctcttggggtgaattgctccctttttttctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36924867_36925326
seq2: B6Ng01-099J06.b_48_507

seq1  GAATTCATATAATTCATCCTTTTTCTTTGTTTATAACAATTTATACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAATTCATCCTTTTTCTTTGTTTATAACAATTTATACATCT  50

seq1  ACAACACAGCTCTACACCTATAGCACTAGAAACTGCATAGAAAGCAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAGCTCTACACCTATAGCACTAGAAACTGCATAGAAAGCAGGCA  100

seq1  GAAAGATTGTAAGGGTCACAAGAGCAGAACATTTGCTGGTAGATAGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTGTAAGGGTCACAAGAGCAGAACATTTGCTGGTAGATAGTATC  150

seq1  TCACAGGTATGACAGAAATGCTACACCCATAAAATATTACCAATATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTATGACAGAAATGCTACACCCATAAAATATTACCAATATGATT  200

seq1  GTCTAAATAAGACCTTTATAGTGATAAAAAATTGACATCTTATAAGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAATAAGACCTTTATAGTGATAAAAAATTGACATCTTATAAGATCT  250

seq1  TTATACTTTAAAAAAAAAAAAAAACTGACATCTTAGTGTGGATGGGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTTAAAAAAAAAAAAAAACTGACATCTTAGTGTGGATGGGGGAA  300

seq1  ATTGCACAAGTTCTACCCTAAATGCTATAGGTATTTAATGACCCTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACAAGTTCTACCCTAAATGCTATAGGTATTTAATGACCCTTGAAA  350

seq1  GAAGGAATATATGTACATAACACCAGGGATACATTGACTCAGTGGTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATATATGTACATAACACCAGGGATACATTGACTCAGTGGTGTGA  400

seq1  GTGTGCGCATGCACATGCGTGCATTTGTGTGTATGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGCATGCACATGCGTGCATTTGTGTGTATGTGTGTGTGTGTGTGT  450

seq1  GTGTGTGTGA  460
      ||||||||||
seq2  GTGTGTGTGA  460

seq1: chr1_174664794_174665350
seq2: B6Ng01-099J06.g_409_963 (reverse)

seq1  CTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAA  49
      ||||||||||||| ||| |||||| ||||||||||||| | |||||||||
seq2  CTAGAAAAAAAGGGAGC-AATTCACCCCAAGAGGAGTA-ATGGCAGGAAA  48

seq1  TAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATT  99
      ||||||||||   ||||||||||||||||||||||||| |||||||||||
seq2  TAATCAAACT--AGGGTGAAATCAACCAAGTGGAAACATGAAGAACTATT  96

seq1  CAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGAT  149
      ||||||||||||| ||| ||||| |||||||||||||||||||||||| |
seq2  CAAAGAATTAACCCAACAAGGAGCTGGTTCTTTGAGAAAATCAACAAGGT  146

seq1  AGATAAACCC-TTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTA  198
      |||||||||| |||| ||| ||||||| ||||||||||||||||||||||
seq2  AGATAAACCCTTTAGTTAGGCTCACTAGAGGGCACAGGGACAAAATCCTA  196

seq1  ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGA  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTAACAAAATCAGAAATGCAAAGGGAGACATAACAACAGATCCTGAAGA  246

seq1  AATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAAC  296

seq1  TGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCA  348
      ||||||||||||| ||||||||||||||||| ||| ||||||||||||||
seq2  TGGAAAACCTGGATGAAATGGACAAATTTCTAGACGGATACCAGGTACCA  346

seq1  AAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAA  398
      ||||| ||||||||||||||| || ||||||||||||||||||| |||||
seq2  AAGTTAAATCAGGATCAAGTTAACGATCTAAACAGTCCCATATCCCCTAA  396

seq1  AGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGAC  448
      ||||||||||||||| ||||||||||||||| |||||||||| |||||||
seq2  AGAAATAGAAGCAGTCATTAATAGTCTCCCAGCCAAAAAAAGTCCAGGAC  446

seq1  CAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATT  498
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGATGGTTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATC  496

seq1  CCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACC  548
      ||| |||||||||||||||| ||||||||||||||||| || ||||||| 
seq2  CCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAGGGAACTCTACT  546

seq1  CAACTCATT  557
       ||||||||
seq2  TAACTCATT  555