BAC Information

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BAC

Clone NameB6Ng01-099J20
Chromosome4 (Build37)
Map Location 97,642,809 - 97,830,686
singlet/doubletdoublet
Overlap geneNfia, LOC100039459, LOC669426
Upstream geneLOC620883, EG638698
Downstream geneLOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099J20.bB6Ng01-099J20.g
ACCDH909360DH909361
length1,051108
definitionDH909360|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J20, 5' end.DH909361|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,829,626 - 97,830,686)(97,642,809 - 97,642,916)
sequence
gaattccagaaagtgccaaggctgagagctccctcatgcagaaggtgtca
cgtagaggtccgaaaataggaggatagaaatgggcttgtggtgatgatgc
aagtgctttcttttactcagtcacaagttcgagaccaagctacagtctgc
agaaagagatcacaatcacacacatgcaatcacataaataataataattt
aagataggacgatctgataatccagaattcccagttattttttaaatcta
gatttattttattgttttatgggtatgaatgttttgcctccatgtatgca
tatcatgtgagtgcctggtgtttgaggaggtcagaagacagtatcagatg
tcctgtgactggagttacaggcaattgtgagccaccctgcggatgctggg
aatttaacttgggtcctctgcaagagcaacaaatgttcttaactgctgag
ccccagcatcccgcttttgagtctattccatttttctgctcccagatgtg
ctaccttcctgttttgttcaggtgattctatgacaaaagagtatgtatat
gtgcttcctaccattaggttttgagctataattgacaaaggcggtgccaa
ctgtacttcattcaagctgcacagagggtcgagagcagtaccccagtcaa
cacagccattgccttatgcagtttctttgtgagatctcttctattggtaa
actttaggtgtacaggcagtgttataaacttgggtattatcagtgtatta
gaataagtgaaatttgtacgcttcaaccagcatgcagttccttaactccc
cactgctagcagtaattgctgtaccttttctaagcattcggccctttcag
attatacatctaagtggtgttaccaatgtttgtcatattgttgacatatt
tcacttgacaccaagactttgaaagttccctcacattgtggtaaataaca
gttttccttttgatttttatttttactaaatgactgaatgacatctattt
gctataatttttttaccagaaatccttgggtgaacactagtctattccta
t
cctctggaatcttcaagttgcttgaggacccctccatcagaggaggatgc
ctactgtccacaagaagatgagatttagaaggcagagcctttcgagagtg
gggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_97829626_97830686
seq2: B6Ng01-099J20.b_47_1097 (reverse)

seq1  ATAGGAATAGACTAAGTGTTCACCCAAAGGATTTCTGGGTAAAAAAAAAT  50
      ||||||||||||| ||||||||||| ||||||||||||    ||||||||
seq2  ATAGGAATAGACT-AGTGTTCACCC-AAGGATTTCTGG---TAAAAAAAT  45

seq1  TATAAGCAAAATAGAATGTCATTCAGTCATTTAGTAAAAAAATAAAAAAT  100
      ||| ||| |||||| |||||||||||||||||||||||||    ||||||
seq2  TAT-AGC-AAATAG-ATGTCATTCAGTCATTTAGTAAAAA---TAAAAAT  89

seq1  CAAAAGGAAAACTGTAATTTAACACAATGTGAGGGAACTTTCAAAGTCTT  150
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  CAAAAGGAAAACTGTTATTTACCACAATGTGAGGGAACTTTCAAAGTCTT  139

seq1  -GTGTCAAGTGAAATATGTCAACAATATGACAAACATTGGTAACACCACT  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAAGTGAAATATGTCAACAATATGACAAACATTGGTAACACCACT  189

seq1  TAGATGTATAATCTGAAAGGGCCGAATGCTTAGAAAAGGTACAGCAATTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTATAATCTGAAAGGGCCGAATGCTTAGAAAAGGTACAGCAATTA  239

seq1  CTGCTAGCAGTGGGGAGTTAAGGAACTGCATGCTGGTTGAAGCGTACAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGCAGTGGGGAGTTAAGGAACTGCATGCTGGTTGAAGCGTACAAA  289

seq1  TTTCACTTATTCTAATACACTGATAATACCCAAGTTTATAACACTGCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTATTCTAATACACTGATAATACCCAAGTTTATAACACTGCCTG  339

seq1  TACACCTAAAGTTTACCAATAGAAGAGATCTCACAAAGAAACTGCATAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTAAAGTTTACCAATAGAAGAGATCTCACAAAGAAACTGCATAAG  389

seq1  GCAATGGCTGTGTTGACTGGGGTACTGCTCTCGACCCTCTGTGCAGCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCTGTGTTGACTGGGGTACTGCTCTCGACCCTCTGTGCAGCTTG  439

seq1  AATGAAGTACAGTTGGCACCGCCTTTGTCAATTATAGCTCAAAACCTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTACAGTTGGCACCGCCTTTGTCAATTATAGCTCAAAACCTAAT  489

seq1  GGTAGGAAGCACATATACATACTCTTTTGTCATAGAATCACCTGAACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAAGCACATATACATACTCTTTTGTCATAGAATCACCTGAACAAA  539

seq1  ACAGGAAGGTAGCACATCTGGGAGCAGAAAAATGGAATAGACTCAAAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGGTAGCACATCTGGGAGCAGAAAAATGGAATAGACTCAAAAGC  589

seq1  GGGATGCTGGGGCTCAGCAGTTAAGAACATTTGTTGCTCTTGCAGAGGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTGGGGCTCAGCAGTTAAGAACATTTGTTGCTCTTGCAGAGGAC  639

seq1  CCAAGTTAAATTCCCAGCATCCGCAGGGTGGCTCACAATTGCCTGTAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTAAATTCCCAGCATCCGCAGGGTGGCTCACAATTGCCTGTAACT  689

seq1  CCAGTCACAGGACATCTGATACTGTCTTCTGACCTCCTCAAACACCAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACAGGACATCTGATACTGTCTTCTGACCTCCTCAAACACCAGGC  739

seq1  ACTCACATGATATGCATACATGGAGGCAAAACATTCATACCCATAAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATGATATGCATACATGGAGGCAAAACATTCATACCCATAAAACA  789

seq1  ATAAAATAAATCTAGATTTAAAAAATAACTGGGAATTCTGGATTATCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAATCTAGATTTAAAAAATAACTGGGAATTCTGGATTATCAGA  839

seq1  TCGTCCTATCTTAAATTATTATTATTTATGTGATTGCATGTGTGTGATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTATCTTAAATTATTATTATTTATGTGATTGCATGTGTGTGATTG  889

seq1  TGATCTCTTTCTGCAGACTGTAGCTTGGTCTCGAACTTGTGACTGAGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTTTCTGCAGACTGTAGCTTGGTCTCGAACTTGTGACTGAGTAA  939

seq1  AAGAAAGCACTTGCATCATCACCACAAGCCCATTTCTATCCTCCTATTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCACTTGCATCATCACCACAAGCCCATTTCTATCCTCCTATTTT  989

seq1  CGGACCTCTACGTGACACCTTCTGCATGAGGGAGCTCTCAGCCTTGGCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCTCTACGTGACACCTTCTGCATGAGGGAGCTCTCAGCCTTGGCAC  1039

seq1  TTTCTGGAATTC  1061
      ||||||||||||
seq2  TTTCTGGAATTC  1051

seq1: chr4_97642809_97642916
seq2: B6Ng01-099J20.g_74_181

seq1  CCTCTGGAATCTTCAAGTTGCTTGAGGACCCCTCCATCAGAGGAGGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGAATCTTCAAGTTGCTTGAGGACCCCTCCATCAGAGGAGGATGC  50

seq1  CTACTGTCCACAAGAAGATGAGATTTAGAAGGCAGAGCCTTTCGAGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTCCACAAGAAGATGAGATTTAGAAGGCAGAGCCTTTCGAGAGTG  100

seq1  GGGGGGGG  108
      ||||||||
seq2  GGGGGGGG  108