BAC Information

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BAC

Clone NameB6Ng01-099N16
Chromosome4 (Build37)
Map Location 143,875,652 - 143,911,676
singlet/doubletdoublet
Overlap geneLOC666150
Upstream genePdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5
Downstream geneLOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099N16.bB6Ng01-099N16.g
ACCDH909532DH909533
length1,0421,084
definitionDH909532|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N16, 5' end.DH909533|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,875,652 - 143,876,698)(143,910,578 - 143,911,676)
sequence
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaac
aaaaaacaaaaaataaaacaaaaataatgtgagtgcaaaattgatggaat
ggggaatccaagtccttcacaaaccaaggcagaagaattgccatgggaaa
tagagtaagaatccacttaaaatgaacacaacaagtggcaggagatttgg
ctcaggagttaatagcactgaatccttttccagaactcatgagttcaatt
cctagcaatcatattgtagctcaccaccatcaataatgggatcacaagtc
ctcggctgaagagagcaacagtgtatttacatatgaaataaataatcaaa
tctttaacactatatatatctatatatgcatatagatatatatatattca
gctgataaaattggccatattaataaaggagatgaggttctgaaggtgtg
aagaagagcacttggcagtatttcctcacccactcaggttcttctcaatt
taaatttacttctcagttagaagttcttcagagtattttacattcttgta
ttcctgaaaaagaccatcatgatctgggtgctatcagaccctccaagtca
taaagcaggacatgcacagcagcagtctattatcaaatggaagtgacata
tatgtgattgggccaaacaagtcctgaaggcacaagtatgttacaagaag
tagttgctcaaatgcctatggtttctactcctgttacagtgccatcagct
accaagcatgtacctatagccttatgggctgttccctatgatcagctgac
tgaagaagacaagactaggacctgattctctaatgtctctgcacgctatg
cagtcaccatccagaagtgcacagctgcagcattacaactgctttccggg
acaaccctgaaagacacaggtgaaaggaaattatttacagtgggcagaaa
ttccagcagtacacatagtattacagtttgtttggaagaagaaatgggca
aatgtacattatttactgattcaggggctataccaggattgg
gaattccaggatagccagagctatatgcacagtccctatctaaaaaaaaa
aaaaaaaaaaaaaaaacccaaccagccaaacaaaaacaagcaaacaaaaa
tataaaagggtacttcctcagagagataaccacaaagttgtcttctacta
cttctttttactctataaaacagattggaccctcttgccatgcgtgtggg
aagagtcagaaagatacctccagccattgctgcatgctccccaagcagtc
ccacacacccagaagccctctctcagatgggctctttaagaccaagattc
tgtagtagtcattccctagaactgagtgtcctgttctttgaccccattct
catcaagacaggatcacatatgatgcacacttgcctggatctccttattc
tgccccagctgacattgaacacccggtctcattgttttcaccttgcaagc
ctaaacaaccatgctcccatctcatctcaactccaaatgtcaacatttgt
ttttattttatttctgtatctcacacaaattgttaatagttctaatctgt
agagacaaaaggaatgttctatgtgacaacttgggctcctgtcatcccta
gatactggctgaagatgggctgtgttccttgggggtcataaatttgaacc
agatggcaggacatttcaaccagaaaatgactgcagcctccatcactgta
gatggctgaaggctgcaatatctagtctgagattcttaaggctcttaaac
atcatttgagtcacaggttccctaacaataacttatttctagtcccaagg
aatgaaggatctgagtactgtccccttaccctgatcatccacatggagtc
ctagatggcccttgtgtgcagtgaaagtcagaggatgactttctttaaga
acagtgaccaaagtgtttctagactttccacttctctaatatctgtcact
tagtgtggcacatttgatgctatcagttctatggacatctagattcatat
ggaccagcatgggagggtcgagaatcttatccctcacttctaggaaagga
agacgtgcagattaaggaacctggaactctaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143875652_143876698
seq2: B6Ng01-099N16.b_51_1089

seq1  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCCAAAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||  
seq2  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAACA--  48

seq1  CAAAAACAAAAAACAAA--AAAAAAAATGTGAGTGCAAAATTGATGCATG  98
       |||||||||||| |||  ||||| ||||||||||||||||         
seq2  -AAAAACAAAAAATAAAACAAAAATAATGTGAGTGCAAAAT---------  88

seq1  CTGGTGATGGAATGGGGAATCCAAGCCCTTCACAAACCAAGGCAGAAGAA  148
          ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ----TGATGGAATGGGGAATCCAAGTCCTTCACAAACCAAGGCAGAAGAA  134

seq1  TTGTCATGGGAAATAGAGTAAGAATCCATCTTAAAATGAAC---ACAAGT  195
      ||| |||||||||||||||||||||||| ||||||||||||   ||||||
seq2  TTGCCATGGGAAATAGAGTAAGAATCCA-CTTAAAATGAACACAACAAGT  183

seq1  GGCAGGAGATTTGGCTCAGGAGTTAATAGCACTGAATCCTTTTCCAGAAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGATTTGGCTCAGGAGTTAATAGCACTGAATCCTTTTCCAGAAC  233

seq1  TCATGAGTTCAATTCCTAGCAATCACATTGTAGCTCACCACCATCAATAA  295
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCATGAGTTCAATTCCTAGCAATCATATTGTAGCTCACCACCATCAATAA  283

seq1  TGGGATCACAAGTCCTCGGCTGAAGAGAGCAAAAGTGTATTTACATATGA  345
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGGATCACAAGTCCTCGGCTGAAGAGAGCAACAGTGTATTTACATATGA  333

seq1  AATAAATAATCAAATCTTTAATACTATATATATCTATATATACAT----A  391
      ||||||||||||||||||||| ||||||||||||||||||| |||    |
seq2  AATAAATAATCAAATCTTTAACACTATATATATCTATATATGCATATAGA  383

seq1  TATATAGATATTCAGCTGATAAAATTGGCCATATTAATAAAGGAGATGAG  441
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATTCAGCTGATAAAATTGGCCATATTAATAAAGGAGATGAG  433

seq1  GTTCTGAAGGTGTGAAGAAGAGCACTTGGCAGTATTTCCTCACTCACTCA  491
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTCTGAAGGTGTGAAGAAGAGCACTTGGCAGTATTTCCTCACCCACTCA  483

seq1  GGTTCTTCTCAATTTAAATTTACTTCTC----AGAAGTTCTTCAGAGTAT  537
      ||||||||||||||||||||||||||||    ||||||||||||||||||
seq2  GGTTCTTCTCAATTTAAATTTACTTCTCAGTTAGAAGTTCTTCAGAGTAT  533

seq1  TTTACATTCTTGTATTGCTGAAAAAGGCCATCATGATCTGGGTACTATCA  587
      |||||||||||||||| ||||||||| |||||||||||||||| ||||||
seq2  TTTACATTCTTGTATTCCTGAAAAAGACCATCATGATCTGGGTGCTATCA  583

seq1  GACCCTCCAAGTCATAAATTAGGACATGCACAGCAGCAGTCTATTATCAA  637
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  GACCCTCCAAGTCATAAAGCAGGACATGCACAGCAGCAGTCTATTATCAA  633

seq1  ATGGAAGTGCTATATATGTGTGTTTGGGCCAAACAAATCCTGAAGGCACA  687
      |||||||||  | |||| |||| ||||||||||||| |||||||||||||
seq2  ATGGAAGTG--ACATATATGTGATTGGGCCAAACAAGTCCTGAAGGCACA  681

seq1  TGTATGTTACACGAAGTAGTTGTTCAAATGCCTATGGTTTCTACTCCTGT  737
       |||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  AGTATGTTACAAGAAGTAGTTGCTCAAATGCCTATGGTTTCTACTCCTGT  731

seq1  TACCGTGCCATCAACTAACAAGCATGTACCTATAGCCTCATGGGCTGTTC  787
      ||| ||||||||| ||| |||||||||||||||||||| |||||||||||
seq2  TACAGTGCCATCAGCTACCAAGCATGTACCTATAGCCTTATGGGCTGTTC  781

seq1  CCTATGATCAGCTGACTGAAGAAGACAAGACTAGGACCTGATTCTCTAAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGATCAGCTGACTGAAGAAGACAAGACTAGGACCTGATTCTCTAAT  831

seq1  GTCTCTGCACGCTATGCAGTCACCATCCAGAAGTGTACAGCTGCAGCATT  887
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTCTCTGCACGCTATGCAGTCACCATCCAGAAGTGCACAGCTGCAGCATT  881

seq1  ACAACCGCTTTCCGGGGACAACCCTGAAAGACACAGGTG-AAGGAAAATC  936
      ||||| ||||||| ||||||||||||||||||||||||| ||||||| | 
seq2  ACAACTGCTTTCC-GGGACAACCCTGAAAGACACAGGTGAAAGGAAATTA  930

seq1  TTTACAGTGGGCAGAACTTCCAGCAGTACACATAGTATT--AGTTTGTTT  984
      |||||||||||||||| ||||||||||||||||||||||  |||||||||
seq2  TTTACAGTGGGCAGAAATTCCAGCAGTACACATAGTATTACAGTTTGTTT  980

seq1  GAAAGAAGAAATGGCCGAATGTAAGATTATTTACTGATTCAGGGGCTGTA  1034
      | |||||||||||| | ||||| | |||||||||||||||||||||| ||
seq2  GGAAGAAGAAATGGGCAAATGT-ACATTATTTACTGATTCAGGGGCTATA  1029

seq1  GCCAAAGGATTGG  1047
       |   ||||||||
seq2  CC---AGGATTGG  1039

seq1: chr4_143910578_143911676
seq2: B6Ng01-099N16.g_69_1152 (reverse)

seq1  CATTAGAGTCACGGGTCCCTTAATCAGCCACTGTCTTCCTGTCCTAGGAG  50
      |||||||||  | ||| |||||||| | ||| |||||||| ||||| || 
seq2  CATTAGAGTTCCAGGTTCCTTAATCTG-CAC-GTCTTCCTTTCCTA-GAA  47

seq1  GTGAGGGATAAGATTTCTCGACCCTCACCCTGCTGGTCCATATGGAATCC  100
      ||||||||||||| |||||||||||| || ||||||||||||| |||| |
seq2  GTGAGGGATAAGA-TTCTCGACCCTC-CCATGCTGGTCCATAT-GAAT-C  93

seq1  TAGATAGTACATGGAACTGATAGCATCAAACGTGCTACCACTAAGTGACA  150
      ||||| || ||| ||||||||||||||||| |||| | ||||||||||||
seq2  TAGAT-GTCCATAGAACTGATAGCATCAAATGTGCCA-CACTAAGTGACA  141

seq1  GATATTAGGGAAGTGGAAAATCTAGAAACACTTTGATCACCTATTCTTAA  200
      |||||||| |||||||||| ||||||||||||||| ||| || |||||||
seq2  GATATTAGAGAAGTGGAAAGTCTAGAAACACTTTGGTCA-CTGTTCTTAA  190

seq1  AGAAAGTCATCCTCTGACTTTCACTGCACATAAGGGCCATCTAGGACTCC  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAAAGTCATCCTCTGACTTTCACTGCACACAAGGGCCATCTAGGACTCC  240

seq1  ATGTGGATGATCAGGGTAAGGGGACAGTACTCAGATCCTTCATTCCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATGATCAGGGTAAGGGGACAGTACTCAGATCCTTCATTCCTTGG  290

seq1  GACTAGAAATAAGTTACTGTTAGGGAACCTGTGACTCAAATGATGTTTAA  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACTAGAAATAAGTTATTGTTAGGGAACCTGTGACTCAAATGATGTTTAA  340

seq1  GAGCCTTAAGAATCTCAGACTAGATATTGCAGCCTTCAGCCAACTACAGA  400
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  GAGCCTTAAGAATCTCAGACTAGATATTGCAGCCTTCAGCCATCTACAGT  390

seq1  GATGGAGGCTGCAGTTATTTTCTGGTTGAAATGTCCTGCCATCTGGTTCA  450
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATGGAGGCTGCAGTCATTTTCTGGTTGAAATGTCCTGCCATCTGGTTCA  440

seq1  AATTTATGACCCCCAAGGAACACAGCCTATCTTCAGCCAATATCTAGGGA  500
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  AATTTATGACCCCCAAGGAACACAGCCCATCTTCAGCCAGTATCTAGGGA  490

seq1  TGACAGGAGCCCAAGTTGTCACATAGAACATTCCTTTTGTCTCTACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAGCCCAAGTTGTCACATAGAACATTCCTTTTGTCTCTACAGAT  540

seq1  TAGAACTATTAACAATTTGTGTGAGATACAGAAATAAAATAAAAACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTATTAACAATTTGTGTGAGATACAGAAATAAAATAAAAACAAAT  590

seq1  GTTGACATTTGGAGTTGAGATGAGATGGGAGCATGGTTGTTTAGGCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATTTGGAGTTGAGATGAGATGGGAGCATGGTTGTTTAGGCTTGC  640

seq1  AAGGTGAAAACAATGGGACCGGGTGTTCAATGTCAGCTGGGGCAGAATAA  700
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAAACAATGAGACCGGGTGTTCAATGTCAGCTGGGGCAGAATAA  690

seq1  GAAGATCCAGGCAAGTGTGCATCATATGTGATCCTGTCTTGATGAGAATG  750
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCCAGGCAAGTGTGCATCATATGTGATCCTGTCTTGATGAGAATG  740

seq1  GGGTCAAAGAACAGGACACTCAGTTCTAGGGGAAGACTACTAGAGAATCT  800
      ||||||||||||||||||||||||||||||| | |||||||| |||||||
seq2  GGGTCAAAGAACAGGACACTCAGTTCTAGGGAATGACTACTACAGAATCT  790

seq1  TGGTCTTAAAGAGCCCATCTGAGAGAGGGCTTCGGGGTGTGTGGGACTGC  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGTCTTAAAGAGCCCATCTGAGAGAGGGCTTCTGGGTGTGTGGGACTGC  840

seq1  TTGGGGAGCATGCAGCAATGGCTGGAGGTATCTTTCTGACTCTTCCCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGCATGCAGCAATGGCTGGAGGTATCTTTCTGACTCTTCCCACA  890

seq1  TGCATGGCAAGAGGGTCCAATCTGTTTTATAGAGTAAAAAGAAGTAGTAG  950
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGGCAAGAGGGTCCAATCTGTTTTATAGAGTAAAAAGAAGTAGTAG  940

seq1  AAGACAACTTTGTGGTTATCTCTCTGAAGAAGTACCCTTTTATATTTTTG  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGACAACTTTGTGGTTATCTCTCTGAGGAAGTACCCTTTTATATTTTTG  990

seq1  TTTGCTTGTTTTTGTTTGTTTGGCTGGTTGGGTTTTTTTTTTTTTTTTTT  1050
      ||||||||||    ||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGTT----TTTGTTTGGCTGGTTGGGTTTTTTTTTTTTTTTTTT  1036

seq1  TTTTTTTAAGATAGGGACTGTGCATATAGCTCTGGCTATCCTGGAATTC  1099
      ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTT-AGATAGGGACTGTGCATATAGCTCTGGCTATCCTGGAATTC  1084