BAC Information

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BAC

Clone NameB6Ng01-100I06
Chromosome4 (Build37)
Map Location 28,825,196 - 28,932,395
singlet/doubletdoublet
Overlap geneEpha7
Upstream geneTpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
Downstream geneLOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100I06.bB6Ng01-100I06.g
ACCDH909993DH909994
length1,1471,133
definitionDH909993|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I06, 5' end.DH909994|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,825,196 - 28,826,345)(28,931,252 - 28,932,395)
sequence
gaattccacacataatgataacctgagagctgaagcaggcagagaaattt
tagttttggttgtagatttaatgccttcccatactgattctgtaaacatg
accaataattaaggtcttactcttgcccattatttaatgactttattagg
aaatttttattccaaaatttcatgttagttacttgttacaaatgtggatc
ctgtggagtaacattcaggaagttctggttttgctggtaaattgggtgag
aaccaattatgtcaagtttgcatgtattcctatttttctagttattcaat
atgcacagcacatctttagtggcaatttgacaaacagatttactgaccca
caaaatataaattaatatttccttcatgacagagtgtgtttcgaggagct
ttaaaaagaatttaaatgcccattttaacacattttaagacagagtgttt
ctgttttgcagccgttacttcatgagaacaaaagataaacagattatttt
ttaaataaccgagcatttttaaggatgattctttctgaattaatctaaat
ctaatttttaaaacttccaataggatgagctcctaaaaaccccatatttc
acactttgattctgcctcagaactgtgctaattaggctagataaccttgt
ctctaagacactaaaaagtagcaaacctgtgtaggctttatgtatatttt
gccaagttatctttttaaatgagttctcatgaaatctaattttgccgtct
ttgattatgcatctaacacgtgcctcatagtgttttaatgaaaaagaata
atttaatatttgtccttctatagggtatgttttttgctagctccattctc
atatgtaaattgttgaatacaaaagtgaattgccttgtttccccaagtga
agtacaagtgcagcacaaaagggtttttgtgggtgaagacttttcttctt
ctaaaatagacagtcatgtttgctttcgaacactttgcctatgcatcgta
ttgatcactattaagatttcttttagaaatcagtactgaagttcactact
aaggttttgttgacttgagcagcctctgcctggtcacactgacagaaaag
ccatccgaccttctctgtgcttccaacactggacatatggcgtgcac
gaattctacactccacaggctacagtaaatcatgtgacctctttgactga
tatgcagatggcagctctgaaggccatgtccatctggcatggaaggtcct
gcttgctatctcctggaagctgtgtgcaacatcataaagagtactagtgg
tcacaccaggctataaagtgcctttgaggttggaaaggatcaaaggtccc
aaagcgctgggatacccagatatgtgactgaagaggttctcttggatttg
tagatcagtggctgcacaaagtaacatgtgggtcaatacgaagtttgcag
gtcaagctcttcccagttatatgaaacatcaagctgtaatcaaagaagac
attaagctttccagcagtaaatcactagaagtaaaactatgtctttaaat
gaaggggtgttctaggaaagctgaaccagcacttgcttggaattggaagg
tacatgggagataggaggggctgtgagaggattagtaatgaatgaacgct
actaagagctgggaaagatacaccatctcttgtgtaatggaagaaagttt
ggcaacactgtcttctatgatattatggaacaaaaagaaattaactactg
tgtttggataagaccacaatttatattcatttctggcttgaatgaagaaa
gtgggttttttttgtttgttttttgttttgttttgttttgttttgttttg
tttttaagtgactaatgaaaagcagaatgagaaatggttgtaacatggaa
ctacaaagggccatatagcatctccagacaggaaaaattttttcagaaaa
ataaaattttgccttaagataaaagatagactaagggtggtaagtgctaa
gaactttattgagaagtgatatgtaaggacacgcttacccatgtctcatc
taaataacacacaggcttctaagcccttgtagaaagtaaagcctctcact
aagctgctggacaaacatagtgacctgaggatgtgtcccagtgcacttca
ctgagaggagctaactgttgtgactcttccatagagtgagctgtctgaat
tacgtgagctagtaattgaccaagaaagttttataacctggatgagatgt
ttcaaggccgatccaattgaatgatctgaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28825196_28826345
seq2: B6Ng01-100I06.b_44_1190

seq1  GAATTCCACACATAATGATAACCTGAGAGCTGAAGCAGGCAGAGAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACATAATGATAACCTGAGAGCTGAAGCAGGCAGAGAAATTT  50

seq1  TAGTTTTGGTTGTAGATTTAATGCCTTCCCATACTGATTCTGTAAACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGGTTGTAGATTTAATGCCTTCCCATACTGATTCTGTAAACATG  100

seq1  ACCAATAATTAAGGTCTTACTCTTGCCCATTATTTAATGACTTTATTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAATTAAGGTCTTACTCTTGCCCATTATTTAATGACTTTATTAGG  150

seq1  AAATTTTTATTCCAAAATTTCATGTTAGTTACTTGTTACAAATGTGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTATTCCAAAATTTCATGTTAGTTACTTGTTACAAATGTGGATC  200

seq1  CTGTGGAGTAACATTCAGGAAGTTCTGGTTTTGCTGGTAAATTGGGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGTAACATTCAGGAAGTTCTGGTTTTGCTGGTAAATTGGGTGAG  250

seq1  AACCAATTATGTCAAGTTTGCATGTATTCCTATTTTTCTAGTTATTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTATGTCAAGTTTGCATGTATTCCTATTTTTCTAGTTATTCAAT  300

seq1  ATGCACAGCACATCTTTAGTGGCAATTTGACAAACAGATTTACTGACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGCACATCTTTAGTGGCAATTTGACAAACAGATTTACTGACCCA  350

seq1  CAAAATATAAATTAATATTTCCTTCATGACAGAGTGTGTTTCGAGGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATAAATTAATATTTCCTTCATGACAGAGTGTGTTTCGAGGAGCT  400

seq1  TTAAAAAGAATTTAAATGCCCATTTTAACACATTTTAAGACAGAGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAATTTAAATGCCCATTTTAACACATTTTAAGACAGAGTGTTT  450

seq1  CTGTTTTGCAGCCGTTACTTCATGAGAACAAAAGATAAACAGATTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGCAGCCGTTACTTCATGAGAACAAAAGATAAACAGATTATTTT  500

seq1  TTAAATAACCGAGCATTTTTAAGGATGATTCTTTCTGAATTAATCTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAACCGAGCATTTTTAAGGATGATTCTTTCTGAATTAATCTAAAT  550

seq1  CTAATTTTTAAAACTTCCAATAGGATGAGCTCCTAAAAACCCCATATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTTAAAACTTCCAATAGGATGAGCTCCTAAAAACCCCATATTTC  600

seq1  ACACTTTGATTCTGCCTCAGAACTGTGCTAATTAGGCTAGATAACCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGATTCTGCCTCAGAACTGTGCTAATTAGGCTAGATAACCTTGT  650

seq1  CTCTAAGACACTAAAAAGTAGCAAACCTGTGTAGGCTTTATGTATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGACACTAAAAAGTAGCAAACCTGTGTAGGCTTTATGTATATTTT  700

seq1  GCCAAGTTATCTTTTTAAATGAGTTCTCATGAAATCTAATTTTGCCGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTTATCTTTTTAAATGAGTTCTCATGAAATCTAATTTTGCCGTCT  750

seq1  TTGATTATGCATCTAACACGTGCCTCATAGTGTTTTAATGAAAAAGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATGCATCTAACACGTGCCTCATAGTGTTTTAATGAAAAAGAATA  800

seq1  A-TTAATA-TTGTCCTTCTATAGGGTATGTTTTTTGCTAGCTCCA-TCTC  847
      | |||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTAATATTTGTCCTTCTATAGGGTATGTTTTTTGCTAGCTCCATTCTC  850

seq1  ATATGT-AATTGTTGAATACAAAAGTGAATTGCCT--GTTCCCCAAGTGA  894
      |||||| ||||||||||||||||||||||||||||   ||||||||||||
seq2  ATATGTAAATTGTTGAATACAAAAGTGAATTGCCTTGTTTCCCCAAGTGA  900

seq1  AGTACAAGTGCAGCACAAAAGGG-TTTTGT-GGTGAAGAC-TCTCTTCTT  941
      ||||||||||||||||||||||| |||||| ||||||||| | |||||||
seq2  AGTACAAGTGCAGCACAAAAGGGTTTTTGTGGGTGAAGACTTTTCTTCTT  950

seq1  CTAAAATAGACAGTCATGTTTGCTTCCGAACACTTTGCCTATGCATCGTA  991
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTAAAATAGACAGTCATGTTTGCTTTCGAACACTTTGCCTATGCATCGTA  1000

seq1  TTGTATCACTATTAAAGAATTCTTTTAGAAATTCAGTACTG-AGTTCACT  1040
      ||| ||||||||| |||| |||||||||||| ||||||||| ||||||||
seq2  TTG-ATCACTATT-AAGATTTCTTTTAGAAA-TCAGTACTGAAGTTCACT  1047

seq1  ACTAAAGTTTTGTTGAACTTGAAGCAAGCCCTCTGCCTGGTTCACACTGA  1090
      ||||| ||||||||| ||||| ||||   ||||||||||| |||||||||
seq2  ACTAAGGTTTTGTTG-ACTTG-AGCA--GCCTCTGCCTGG-TCACACTGA  1092

seq1  CAGAGAAGCCATCCCTGACCCTTCTCTGTGCTTCCCAACACTGGGACTAT  1140
      |||| |||||||||  || |||||||||||||| |||||||| ||||   
seq2  CAGAAAAGCCATCC--GA-CCTTCTCTGTGCTT-CCAACACT-GGACATA  1137

seq1  TGGCGTGCAC  1150
      ||||||||||
seq2  TGGCGTGCAC  1147

seq1: chr4_28931252_28932395
seq2: B6Ng01-100I06.g_69_1201 (reverse)

seq1  AAATTTTAGATCATTTCAATTTTGAACTGCCTTGAAAACATCTAATCTAG  50
       || || |||||| ||||| || || | |||||| |||||||| ||| ||
seq2  -AAATTCAGATCA-TTCAA-TTGGATCGGCCTTG-AAACATCTCATCCAG  46

seq1  TATATAAAAC-TTCTTTGTCAATTTACTAAGCTCACGTAAATCTCAGACA  99
        |||||||| ||||| ||||| ||||| |||||||||||   |||||||
seq2  GTTATAAAACTTTCTTGGTCAA-TTACT-AGCTCACGTAA--TTCAGACA  92

seq1  GCTCACTCTATTGGAAGAGTCACATACAAGTTAGCTCCTCTCAGTGAAGT  149
      |||||||||| ||||||||||||| || ||||||||||||||||||||| 
seq2  GCTCACTCTA-TGGAAGAGTCACA-AC-AGTTAGCTCCTCTCAGTGAAG-  138

seq1  TGCACTGGGACACATCCTCAGGTCACTATGTTTTGTCCAGCAGCTTAGTG  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCACTGGGACACATCCTCAGGTCACTATG-TTTGTCCAGCAGCTTAGTG  187

seq1  AGAGGCTTTACTTTCTACAAGGGGCTTAGAAGCCTGTGTGTTATTTAGAT  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAGGCTTTACTTTCTACAA-GGGCTTAGAAGCCTGTGTGTTATTTAGAT  236

seq1  GAGACAT-GGTAAGCGTGTCCTTACATATCACTTCTCAATAAAGTTCTTA  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATGGGTAAGCGTGTCCTTACATATCACTTCTCAATAAAGTTCTTA  286

seq1  GCACTTACCACCCTTAGTCTATC-TTTATCTTAAGGCAAAATTTTATTTT  347
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCACTTACCACCCTTAGTCTATCTTTTATCTTAAGGCAAAATTTTATTTT  336

seq1  TCTGAAAAAATTTTTCCTGTCTGGAGATGCTATATGGCCCTTTGTAGTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAAATTTTTCCTGTCTGGAGATGCTATATGGCCCTTTGTAGTTC  386

seq1  CATGTTACAACCATTTCTCATTCTGCTTTTCATTAGTCACTTAAAAACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACAACCATTTCTCATTCTGCTTTTCATTAGTCACTTAAAAACAA  436

seq1  AACAAAACAAAACAAAACAAAACAAAAAACAAACAAAAAAAACCCACTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAACAAAACAAAAAACAAACAAAAAAAACCCACTTT  486

seq1  CTTCATTCAAGCCAGAAATGAATATAAATTGTGGTCTTATCCAAACACAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCAAGCCAGAAATGAATATAAATTGTGGTCTTATCCAAACACAG  536

seq1  TAGTTAATTTCTTTTTGTTCCATAATATCATAGAAGACAGTGTTGCCAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATTTCTTTTTGTTCCATAATATCATAGAAGACAGTGTTGCCAAA  586

seq1  CTTTCTTCCATTACACAAGAGATGGTGTATCTTTCCCAGCTCTTAGTAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCATTACACAAGAGATGGTGTATCTTTCCCAGCTCTTAGTAGC  636

seq1  GTTCATTCATTACTAATCCTCTCACAGCCCCTCCTATCTCCCATGTACCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCATTACTAATCCTCTCACAGCCCCTCCTATCTCCCATGTACCT  686

seq1  TCCAATTCCAAGCAAGTGCTGGTTCAGCTTTCCTAGAACACCCCTTCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCCAAGCAAGTGCTGGTTCAGCTTTCCTAGAACACCCCTTCATT  736

seq1  TAAAGACATAGTTTTACTTCTAGTGATTTACTGCTGGAAAGCTTAATGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACATAGTTTTACTTCTAGTGATTTACTGCTGGAAAGCTTAATGTC  786

seq1  TTCTTTGATTACAGCTTGATGTTTCATATAACTGGGAAGAGCTTGACCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGATTACAGCTTGATGTTTCATATAACTGGGAAGAGCTTGACCTG  836

seq1  CAAACTTCGTATTGACCCACATGTTACTTTGTGCAGCCACTGATCTACAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCGTATTGACCCACATGTTACTTTGTGCAGCCACTGATCTACAA  886

seq1  ATCCAAGAGAACCTCTTCAGTCACATATCTGGGTATCCCAGCGCTTTGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAGAACCTCTTCAGTCACATATCTGGGTATCCCAGCGCTTTGGG  936

seq1  ACCTTTGATCCTTTCCAACCTCAAAGGCACTTTATAGCCTGGTGTGACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGATCCTTTCCAACCTCAAAGGCACTTTATAGCCTGGTGTGACCA  986

seq1  CTAGTACTCTTTATGATGTTGCACACAGCTTCCAGGAGATAGCAAGCAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACTCTTTATGATGTTGCACACAGCTTCCAGGAGATAGCAAGCAGG  1036

seq1  ACCTTCCATGCCAGATGGACATGGCCTTCAGAGCTGCCATCTGCATATCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCATGCCAGATGGACATGGCCTTCAGAGCTGCCATCTGCATATCA  1086

seq1  GTCAAAGAGGTCACATGATTTACTGTAGCCTGTGGAGTGTAGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAGGTCACATGATTTACTGTAGCCTGTGGAGTGTAGAATTC  1133