BAC Information

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BAC

Clone NameB6Ng01-100K20
Chromosome4 (Build37)
Map Location 97,618,949 - 97,750,329
singlet/doubletdoublet
Overlap geneNfia
Upstream geneLOC620883, EG638698
Downstream geneLOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100K20.bB6Ng01-100K20.g
ACCDH910105DH910106
length9561,037
definitionDH910105|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K20, 5' end.DH910106|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,749,373 - 97,750,329)(97,618,949 - 97,620,005)
sequence
gaattccattcttagtttctcatgaaataattaggaatgactttctttaa
gccaaatgtgacaggtgtcactgtggtaagaaacatttaagctattgtca
tcacaatgccaaatatttaatggaaaacaaagagaattcagttctaggtg
ccaataccagatctttatgacatcattcatccagatgcgtgcaaaatctg
gattgttaagaattgaagtttttgtggtcaacaccatgaagacagccttt
gagttaaagaaggcgcttaggaaagaaagtaatactggaaaaaccacatt
ttcattatagacagataaacaaagtagaacatgtacagtttagatgaggt
gaattcgtttgttgtataaaataccatgcaacatacaaacaagacacttc
aacaaatttgtactttctgggttttcaacgaatcaatctgagcaaactga
aactttgaaagaaacaacaccatcctgcatggagctatgggaggcctgct
ggctcactcttcactgagcctgaacatggaagcccaaagcacacagctaa
acacccatcttctaggacgggtgttctcagacaatggtacaacttcaaac
caccaggacagtattggaatatttgaaggtatgggaaaataagcgagtaa
gtgaaagaatgtgatgggagggaggtactgagtaggaattttaatctcag
acaccatgtgcaagccagatttagaagaaacagcagaagcaggagattca
agaggagagtggtttctcttcttgggccctccatttctacttagagctgg
actttctggggtgctgctttaatgtaagtgtgtgtggggaattagaggca
gtgctgcgggcaagcacagtgaagcagagccctgtgtggagggagcagac
acaggaagctcttcgcttagatataagctaggcagctgacaggacatgat
aagctc
gaattctgttgctacatttagggaggggaggtggggacactgccatgtgc
ctgctctgctttaccccattcttggcagcagtcttaagacctgcaaggca
ttagtcagccattggagagcacatgacttctctttcctttgtacctctga
gtatgggaaatgttcctgccattgggcattgtatcctgtaaacagttctt
aggtcttctgagtgctgaacagtgctctgtgctcacaggtggtacttgct
acaacctctttacatcatgcagagtttccagataaccccacgtcagaggg
gtacgtctcgctttccttaccagcccccaacaaggggcttacacagcaga
gatggtggcctttccatcctttgttttctgaatcccactcctctttctct
gtgactgtacacttttcagaggctcgctgttactggcagttgcctatcat
taagaagctgaaagagaattgagagtttaaatcttgagcagttactgagc
tctgcggctgggccaggcagaggaaagaacccccctcaggagtctgaaat
caccatcacccagcctccgtcagctgcatcaggagagatgtgtgtacaat
gaaagatggatcagacggaaagggattagttctaggtcaaggacaggaag
attggcaatatgccatcttttcatgaagcttaattaatataaaaatatag
aaaagtgacacctatggttttccctcatcacttttaccacattagcatgt
tttttgtcattttctttctgccaaaaatgtactctttgaaagggaacagg
gttaagattcagggattgaatgtgtgtataaacaacaaactcaggttctc
ttcatcttgtccgagttcaaggcacagataccaatatgtcggcataggat
ttatatatattattattatattatatattatatattattatcttcccggg
atatattggagatgaattatcttaatctgagtctggcacatatagtgtgg
atgccttaaaatgcgagataatggctaccagtccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_97749373_97750329
seq2: B6Ng01-100K20.b_49_1004 (reverse)

seq1  GAGCTTATCATGTCCTGTCAGCTGCCTAGCTTATATCTAAAGCGAAGAGC  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGCTTATCATGTCCTGTCAGCTGCCTAGCTTATATCT-AAGCGAAGAGC  49

seq1  TTCCTGTGTCTGCTCCCTCCACACAGGGCTCTGCTTCACTGTGCTTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGTCTGCTCCCTCCACACAGGGCTCTGCTTCACTGTGCTTGCCC  99

seq1  GCAGCACTGCCTCTGATTCCCCACACACACTTACATT-AAGCAGCACCCC  149
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  GCAGCACTGCCTCTAATTCCCCACACACACTTACATTAAAGCAGCACCCC  149

seq1  AGAAAGTCCAGCTCTAAGTAGAAAATGGAGGGCCCAAGAAGAGGAACCAC  199
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  AGAAAGTCCAGCTCTAAGTAG-AAATGGAGGGCCCAAGAAGAGAAACCAC  198

seq1  TCTCCTCTTGAATCTCCTGCTTCTGCTGTTTCTTCTAAATCTGGCTTGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTGAATCTCCTGCTTCTGCTGTTTCTTCTAAATCTGGCTTGCA  248

seq1  CATGGTGTCTGAGATTAAAATTCCTACTCAGTACCTCCCTCCCATCACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTCTGAGATTAAAATTCCTACTCAGTACCTCCCTCCCATCACAT  298

seq1  TCTTTCACTTACTCGCTTATTTTCCCATACCTTCAAATATTCCAATACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTTACTCGCTTATTTTCCCATACCTTCAAATATTCCAATACTG  348

seq1  TCCTGGTGGTTTGAAGTTGTACCATTGTCTGAGAACACCCGTCCTAGAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGGTTTGAAGTTGTACCATTGTCTGAGAACACCCGTCCTAGAAG  398

seq1  ATGGGTGTTTAGCTGTGTGCTTTGGGCTTCCATGTTCAGGCTCAGTGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTTTAGCTGTGTGCTTTGGGCTTCCATGTTCAGGCTCAGTGAAG  448

seq1  AGTGAGCCAGCAGGCCTCCCATAGCTCCATGCAGGATGGTGTTGTTTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCCAGCAGGCCTCCCATAGCTCCATGCAGGATGGTGTTGTTTCTT  498

seq1  TCAAAGTTTCAGTTTGCTCAGATTGATTCGTTGAAAACCCAGAAAGTACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTCAGTTTGCTCAGATTGATTCGTTGAAAACCCAGAAAGTACA  548

seq1  AATTTGTTGAAGTGTCTTGTTTGTATGTTGCATGGTATTTTATACAACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTGAAGTGTCTTGTTTGTATGTTGCATGGTATTTTATACAACAA  598

seq1  ACGAATTCACCTCATCTAAACTGTACATGTTCTACTTTGTTTATCTGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATTCACCTCATCTAAACTGTACATGTTCTACTTTGTTTATCTGTCT  648

seq1  ATAATGAAAATGTGGTTTTTCCAGTATTACTTTCTTTCCTAAGCGCCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAAATGTGGTTTTTCCAGTATTACTTTCTTTCCTAAGCGCCTTC  698

seq1  TTTAACTCAAAGGCTGTCTTCATGGTGTTGACCACAAAAACTTCAATTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCAAAGGCTGTCTTCATGGTGTTGACCACAAAAACTTCAATTCT  748

seq1  TAACAATCCAGATTTTGCACGCATCTGGATGAATGATGTCATAAAGATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCCAGATTTTGCACGCATCTGGATGAATGATGTCATAAAGATCT  798

seq1  GGTATTGGCACCTAGAACTGAATTCTCTTTGTTTTCCATTAAATATTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGGCACCTAGAACTGAATTCTCTTTGTTTTCCATTAAATATTTGG  848

seq1  CATTGTGATGACAATAGCTTAAATGTTTCTTACCACAGTGACACCTGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGATGACAATAGCTTAAATGTTTCTTACCACAGTGACACCTGTCA  898

seq1  CATTTGGCTTAAAGAAAGTCATTCCTAATTATTTCATGAGAAACTAAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGCTTAAAGAAAGTCATTCCTAATTATTTCATGAGAAACTAAGAA  948

seq1  TGGAATTC  957
      ||||||||
seq2  TGGAATTC  956

seq1: chr4_97618949_97620005
seq2: B6Ng01-100K20.g_69_1105

seq1  GAATTCTGTTGCTACATTTAGGGAGGGGAGGTGGGGACACTGCCATGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGCTACATTTAGGGAGGGGAGGTGGGGACACTGCCATGTGC  50

seq1  CTGCTCTGCTTTACCCCATTCTTGGCAGCAGTCTTAAGACCTGCAAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGCTTTACCCCATTCTTGGCAGCAGTCTTAAGACCTGCAAGGCA  100

seq1  TTAGTCAGCCATTGGAGAGCACATGACTTCTCTTTCCTTTGTACCTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGCCATTGGAGAGCACATGACTTCTCTTTCCTTTGTACCTCTGA  150

seq1  GTATGGGAAATGTTCCTGCCATTGGGCATTGTATCCTGTAAACAGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGAAATGTTCCTGCCATTGGGCATTGTATCCTGTAAACAGTTCTT  200

seq1  AGGTCTTCTGAGTGCTGAACAGTGCTCTGTGCTCACAGGTGGTACTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCTGAGTGCTGAACAGTGCTCTGTGCTCACAGGTGGTACTTGCT  250

seq1  ACAACCTCTTTACATCATGCAGAGTTTCCAGATAACCCCACGTCAGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTCTTTACATCATGCAGAGTTTCCAGATAACCCCACGTCAGAGGG  300

seq1  GTACGTCTCGCTTTCCTTACCAGCCCCCAACAAGGGGCTTACACAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTCTCGCTTTCCTTACCAGCCCCCAACAAGGGGCTTACACAGCAGA  350

seq1  GATGGTGGCCTTTCCATCCTTTGTTTTCTGAATCCCACTCCTCTTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGGCCTTTCCATCCTTTGTTTTCTGAATCCCACTCCTCTTTCTCT  400

seq1  GTGACTGTACACTTTTCAGAGGCTCGCTGTTACTGGCAGTTGCCTATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTACACTTTTCAGAGGCTCGCTGTTACTGGCAGTTGCCTATCAT  450

seq1  TAAGAAGCTGAAAGAGAATTGAGAGTTTAAATCTTGAGCAGTTACTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCTGAAAGAGAATTGAGAGTTTAAATCTTGAGCAGTTACTGAGC  500

seq1  TCTGCGGCTGGGCCAGGCAGAGGAAAGAACCCCCCTCAGGAGTCTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGGCTGGGCCAGGCAGAGGAAAGAACCCCCCTCAGGAGTCTGAAAT  550

seq1  CACCATCACCCAGCCTCCGTCAGCTGCATCAGGAGAGATGTGTGTACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCACCCAGCCTCCGTCAGCTGCATCAGGAGAGATGTGTGTACAAT  600

seq1  GAAAGATGGATCAGACGGAAAGGGATTAGTTCTAGGTCAAGGACAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGGATCAGACGGAAAGGGATTAGTTCTAGGTCAAGGACAGGAAG  650

seq1  ATTGGCAATATGCCATCTTTTCATGAAGCTTAATTAATAT-AAAATATAG  699
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTGGCAATATGCCATCTTTTCATGAAGCTTAATTAATATAAAAATATAG  700

seq1  AAAAGTGACACCTATGGTTTTCCCTCATCACTTTTACCACATTAGCATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGACACCTATGGTTTTCCCTCATCACTTTTACCACATTAGCATGT  750

seq1  TTTTTGTCATTTTCTTTCTGCCAAAAATGTACTCTTTGAAAGGGAACAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCATTTTCTTTCTGCCAAAAATGTACTCTTTGAAAGGGAACAGG  800

seq1  GTTAAGATTTCAGGGATTGAATGTGTGTATAAACAACAAACTCAGGTTCT  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGA-TTCAGGGATTGAATGTGTGTATAAACAACAAACTCAGGTTCT  849

seq1  CTTCATCTTGTCCGAGTCAAAGGCACAGATACCAATATGTCGGCATTAGG  899
      |||||||||||||||||  |||||||||||||||||||||||||| ||||
seq2  CTTCATCTTGTCCGAGTTCAAGGCACAGATACCAATATGTCGGCA-TAGG  898

seq1  ATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA  949
      ||||||   |||||||||||    ||||||   ||||||   ||||||||
seq2  ATTTATATATATTATTATTA----TATTAT--ATATTAT--ATATTATTA  940

seq1  TTCTTTCTCTGGTGATTATATTGAGAG-TGGACTATCTTTATCTGAGTAC  998
      |   ||| | ||    ||||||| ||| || | |||||| |||||||| |
seq2  T--CTTCCCGGG---ATATATTG-GAGATGAATTATCTTAATCTGAGT-C  983

seq1  TGCAGCA-ATATAGTTGTAGATGCCATAAAAATGCGTAGATAAATGGCTA  1047
      ||  ||| |||||| ||| |||||| | |||||||| |||| ||||||||
seq2  TG--GCACATATAG-TGTGGATGCC-TTAAAATGCG-AGAT-AATGGCTA  1027

seq1  CCAGTTCACT  1057
      ||||| ||||
seq2  CCAGTCCACT  1037