BAC Information

Click to search

BAC

Clone NameB6Ng01-100N05
Chromosome4 (Build37)
Map Location 135,894,117 - 136,084,218
singlet/doubletdoublet
Overlap geneHnrpr, Htr1d, LOC100042540, Luzp1
Upstream geneSrrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46
Downstream geneAof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100N05.bB6Ng01-100N05.g
ACCDH910205DH910206
length1,182947
definitionDH910205|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N05, 5' end.DH910206|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,083,029 - 136,084,218)(135,894,117 - 135,895,062)
sequence
gaattcttgagagtttagcagaaatatggaagtcccaagttgcaagtatt
attgggattttgactagtaggtagccaaactagttgaggggttagaatag
ataagatagactgcctagatattgaggtggagccttgaaatatttatatt
aaataattttgtagaccctgtctcaaaaaacttttttaaaaagttaaagt
tagtatataaataagttgggtgatagtaattattaggactagctcatgat
gaaaatcaatataaatgccctggttttttcaaaagactactaaagaatct
gactaggaagaccaaacaggaagcactgtgatactccaagcaaaagccag
tgtggctgataacagagacactaagaagtggtcagaactctggccaggtg
aagggagaaccccatgcttttgttcctagactgcacatgatgtataagac
aggcaagaaattaaggatgcttcagaccaaggttgctggcctgaatttgt
aggacagtgctgtcctaagtccaatgaaattaagtatagatggaacagta
agaaaaggaagataagtttaaaacattatctgtgaggggttaatggtcaa
tcaaagacaatagagcccataaacacacaagcagggtcagagctcagaag
agaggtattcttacaatataaatctgtgagtcaacaaaaacagatggctt
agaaaaatatagagaaaataagacaccaactgtctaaaccccaatgctca
cagggatgaaaatatagcaaaggggacaaagcatctgtgaggcaagtgga
aaatcacaagagtgcatagcacatagtgtaatggaagcttccaaaaagta
agactaacacaggttggatctatcagacaattatgccacaagtattgcca
gcacgacaccagtagggctgaggagatgtctcagttgtaaggaatttgtc
cagcatatgtggagactggtgttcatctccataccaccatgtgcagggtc
gcaggggttcagccactatttaacagaaatatgcttggaaacagcaacgg
atcaggattgaaattaggggccgtcttcccattaatcaggccgcgatcaa
gacactatctgcatatgccgccagaataggctgaaaaacctggtaacagc
tgttccttgtaaggctatgcctggctggctaa
gaattccagttcagcccgagaaagcctgtctttatagtttttgctttttt
ggtggtgtattggcatttctttgctctgcttttagtttgggtgcagtaag
tcctatgctggatatgatcagaacttagtgtcctgttgagtttcagacag
ctatattcaactcatttttgcatttcacagtcttaaaacatatgtgcaaa
acttagataatgaatatcacatctttattgatatctgaaaagttagtttt
tgtatgatttttattgctgctggcatttccccaggtgtggattgtttcta
ggattgattatttggaaaaaggagtttggctaaatgaaacttttttttaa
acctttagatttgcatatttattttatgtgtatgggtgttttgcttgtgt
gcatatgtaccacgtgtgtgcctggtgccctcaggaggtcagaagatagc
atcagatcctttgacattggagttagggatggtggtgagcctcagtgtga
gtactggcacctgagccatcttccagctcctcttttaccttctaaaataa
aatgagatggcattgctttttgttctcaacagtaatttatgtataaaaca
taaggtgaggaaacagctctttctggctaggctactcttataagttaaaa
taattataaaatgcttactaagacaccatatgtttatactttttcaagat
tttttttaaaaaaaactatgtgtatatgggtgttttgcttgcatgtctgt
tctgtctgtgtcatgtacatgcatggtgtccatggagactagaagagggt
gtcacattcttggaactgggtggtatagatggccatgtgggtgctgggaa
ttgagcttggagttctctgggagagcagcattatgcccttaactgttgag
ccagctctctacttccccattatactaagttttaagagctgtttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136083029_136084218
seq2: B6Ng01-100N05.b_47_1228 (reverse)

seq1  TTAGCCAGGCACTGGCATAGCCTCACAAGAGACAGCTGTTTACCAGGGTC  50
      |||||||| ||  |||||||||| |||||  ||||||| ||||||||   
seq2  TTAGCCAGCCA--GGCATAGCCTTACAAGGAACAGCTG-TTACCAGG--T  45

seq1  TTTTCAGCACAATCTTGCTGGCATATGC-GATAGTGTCTGTGTTTGGTGG  99
      ||||||||  | ||| || ||||||||| |||||||||| || | |  | 
seq2  TTTTCAGCCTATTCTGGC-GGCATATGCAGATAGTGTCT-TGATCGCGGC  93

seq1  CTGATT-ATGGGATGGACTGCCCCTAATTTCAAATCCTGATTCTGTTGCT  148
      |||||| ||||||  ||| |||||||||||| |||||||| || ||||||
seq2  CTGATTAATGGGA-AGACGGCCCCTAATTTC-AATCCTGA-TCCGTTGCT  140

seq1  GTTTCC-AGCACTATTCTGTTAAATAGT-GCTGAACCCCTGCGACCCTGC  196
      |||||| ||||   |||||||||||||| |||||||||||||||||||||
seq2  GTTTCCAAGCATATTTCTGTTAAATAGTGGCTGAACCCCTGCGACCCTGC  190

seq1  ACAT-GTGGTACTGGAGATGAAACACCAGTCTTCACATATGCTGGACAAA  245
      |||| |||||| |||||||| ||||||||||| |||||||||||||| ||
seq2  ACATGGTGGTA-TGGAGATG-AACACCAGTCTCCACATATGCTGGAC-AA  237

seq1  ATGCCTTACAACTGAGACATCTCCTCAGCCCTACTGGTGTCGTGCTGGCA  295
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTACAACTGAGACATCTCCTCAGCCCTACTGGTGTCGTGCTGGCA  287

seq1  ATACTTGTGGCATAATTGTCTTGATAGATCC-ACCTGTGTTAGTCTTACT  344
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  ATACTTGTGGCATAATTGTC-TGATAGATCCAACCTGTGTTAGTCTTACT  336

seq1  TTTTGGAAGCTTCCATTACACTATGTGCTATGCACTCTTGTGATTTTCCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAGCTTCCATTACACTATGTGCTATGCACTCTTGTGATTTTCCA  386

seq1  CTTGCCTCACAGATGCTTTGTCCCCTTTGCTATATTTTCATCCCTGTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCACAGATGCTTTGTCCCCTTTGCTATATTTTCATCCCTGTGAG  436

seq1  CATTGGGGTTTAGACAGTTGGTGTCTTATTTTCTCTATATTTTTCTAAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGTTTAGACAGTTGGTGTCTTATTTTCTCTATATTTTTCTAAGC  486

seq1  CATCTGTTTTTGTTGACTCACAGATTTATATTGTAAGAATACCTCTCTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTTTTGTTGACTCACAGATTTATATTGTAAGAATACCTCTCTTC  536

seq1  TGAGCTCTGACCCTGCTTGTGTGTTTATGGGCTCTATTGTCTTTGATTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTGACCCTGCTTGTGTGTTTATGGGCTCTATTGTCTTTGATTGA  586

seq1  CCATTAACCCCTCACAGATAATGTTTTAAACTTATCTTCCTTTTCTTACT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAACCCCTCACAGATAATGTTTTAAACTTATCTTCCTTTTCTTACT  636

seq1  GTTCCATCTATACTTAATTTCATTGGACTTAGGACAGCACTGTCCTACAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCTATACTTAATTTCATTGGACTTAGGACAGCACTGTCCTACAA  686

seq1  ATTCAGGCCAGCAACCTTGGTCTGAAGCATCCTTAATTTCTTGCCTGTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGCCAGCAACCTTGGTCTGAAGCATCCTTAATTTCTTGCCTGTCT  736

seq1  TATACATCATGTGCAGTCTAGGAACAAAAGCATGGGGTTCTCCCTTCACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCATGTGCAGTCTAGGAACAAAAGCATGGGGTTCTCCCTTCACC  786

seq1  TGGCCAGAGTTCTGACCACTTCTTAGTGTCTCTGTTATCAGCCACACTGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGAGTTCTGACCACTTCTTAGTGTCTCTGTTATCAGCCACACTGG  836

seq1  CTTTTGCTTGGAGTATCACAGTGCTTCCTGTTTGGTCTTCCTAGTCAGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTGGAGTATCACAGTGCTTCCTGTTTGGTCTTCCTAGTCAGAT  886

seq1  TCTTTAGTAGTCTTTTGAAAAAACCAGGGCATTTATATTGATTTTCATCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTAGTCTTTTGAAAAAACCAGGGCATTTATATTGATTTTCATCA  936

seq1  TGAGCTAGTCCTAATAATTACTATCACCCAACTTATTTATATACTAACTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGTCCTAATAATTACTATCACCCAACTTATTTATATACTAACTT  986

seq1  TAACTTTTTAAAAAAGTTTTTTGAGACAGGGTCTACAAAATTATTTAATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTTAAAAAAGTTTTTTGAGACAGGGTCTACAAAATTATTTAATA  1036

seq1  TAAATATTTCAAGGCTCCACCTCAATATCTAGGCAGTCTATCTTATCTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTCAAGGCTCCACCTCAATATCTAGGCAGTCTATCTTATCTAT  1086

seq1  TCTAACCCCTCAACTAGTTTGGCTACCTACTAGTCAAAATCCCAATAATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCCCTCAACTAGTTTGGCTACCTACTAGTCAAAATCCCAATAATA  1136

seq1  CTTGCAACTTGGGACTTCCATATTTCTGCTAAACTCTCAAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAACTTGGGACTTCCATATTTCTGCTAAACTCTCAAGAATTC  1182

seq1: chr4_135894117_135895062
seq2: B6Ng01-100N05.g_71_1017

seq1  GAATTCCAGTTCAGCCCGAGAAAGCCTGTCTTTATAGTTTTTGCTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCAGCCCGAGAAAGCCTGTCTTTATAGTTTTTGCTTTTTT  50

seq1  GGTGGTGTATTGGCATTTCTTTGCTCTGCTTTTAGTTTGGGTGCAGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGTATTGGCATTTCTTTGCTCTGCTTTTAGTTTGGGTGCAGTAAG  100

seq1  TCCTATGCTGGATATGATCAGAACTTAGTGTCCTGTTGAGTTTCAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGCTGGATATGATCAGAACTTAGTGTCCTGTTGAGTTTCAGACAG  150

seq1  CTATATTCAACTCATTTTTGCATTTCACAGTCTTAAAACATATGTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTCAACTCATTTTTGCATTTCACAGTCTTAAAACATATGTGCAAA  200

seq1  ACTTAGATAATGAATATCACATCTTTATTGATATCTGAAAAGTTAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGATAATGAATATCACATCTTTATTGATATCTGAAAAGTTAGTTTT  250

seq1  TGTATGATTTTTATTGCTGCTGGCATTTCCCCAGGTGTGGATTGTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGATTTTTATTGCTGCTGGCATTTCCCCAGGTGTGGATTGTTTCTA  300

seq1  GGATTGATTATTTGGAAAAAGGAGTTTGGCTAAATGAAACTTTTTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGATTATTTGGAAAAAGGAGTTTGGCTAAATGAAACTTTTTTTTAA  350

seq1  ACCTTTAGATTTGCATATTTATTTTATGTGTATGGGTGTTTTGCTTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAGATTTGCATATTTATTTTATGTGTATGGGTGTTTTGCTTGTGT  400

seq1  GCATATGTACCACGTGTGTGCCTGGTGCCCTCAGGAGGTCAGAAGATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTACCACGTGTGTGCCTGGTGCCCTCAGGAGGTCAGAAGATAGC  450

seq1  ATCAGATCCTTTGACATTGGAGTTAGGGATGGTGGTGAGCCTCAGTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCTTTGACATTGGAGTTAGGGATGGTGGTGAGCCTCAGTGTGA  500

seq1  GTACTGGCACCTGAGCCATCTTCCAGCTCCTCTTTTACCTTCTAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGCACCTGAGCCATCTTCCAGCTCCTCTTTTACCTTCTAAAATAA  550

seq1  AATGAGATGGCATTGCTTTTTGTTCTCAACAGTAATTTATGTATAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGGCATTGCTTTTTGTTCTCAACAGTAATTTATGTATAAAACA  600

seq1  TAAGGTGAGGAAACAGCTCTTTCTGGCTAGGCTACTCTTATAAGTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGAGGAAACAGCTCTTTCTGGCTAGGCTACTCTTATAAGTTAAAA  650

seq1  TAATTATAAAATGCTTACTAAGACACCATATGTTTATACTTTTTCAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAAAATGCTTACTAAGACACCATATGTTTATACTTTTTCAAGAT  700

seq1  TTTTTTTAAAAAAAACTATGTGTATATGGGTGTTTTGCTTGCATGTCTG-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTTTTAAAAAAAACTATGTGTATATGGGTGTTTTGCTTGCATGTCTGT  750

seq1  TCTGTCTGTGTCATGTACATGCATGGTGTCCATGGAGACTAGAAGAGGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTGTCATGTACATGCATGGTGTCCATGGAGACTAGAAGAGGGT  800

seq1  GTCACATTCTTGGAACTGGGTGGTATAGATGGCCATGTGGGTGCTGGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTCTTGGAACTGGGTGGTATAGATGGCCATGTGGGTGCTGGGAA  850

seq1  TTGAGCCTGGAGTTCTCT-GGAGAGCAGCA-TATGCCCTTAACTGTTGAG  897
      |||||| ||||||||||| ||||||||||| |||||||||||||||||||
seq2  TTGAGCTTGGAGTTCTCTGGGAGAGCAGCATTATGCCCTTAACTGTTGAG  900

seq1  CCAGCTCTCTACTTCCCCATTTATACTAAGTTTTAAAATGCTGTTTCTT  946
      ||||||||||||||||||| |||||||||||||||| | |||||||| |
seq2  CCAGCTCTCTACTTCCCCA-TTATACTAAGTTTTAAGA-GCTGTTTCCT  947