BAC Information

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BAC

Clone NameB6Ng01-100N24
Chromosome4 (Build37)7 (Build37)
Map Location 90,029,082 - 90,029,57570,617,703 - 70,618,102
singlet/doubletsingletsinglet
Overlap geneLOC619842
Upstream geneLOC664785, Dmrta1, Zfp352
Downstream geneLOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100N24.bB6Ng01-100N24.g
ACCDH910241DH910242
length203394
definitionDH910241|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N24, 5' end.DH910242|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,029,082 - 90,029,575)(70,617,703 - 70,618,102)
sequence
ttgattaaattacctgaaatggaatagtcattctgaatgtgatcagcact
ttcctaaagcagtggcccagatataaggaattctgaagggaaagcctttg
cgttttgccttctttccttcacatctttacccagtttctacccctgctac
tattgctgctgctattgctgctgctgctgctgctgctgctgatgatgatg
atg
aggctgacaaataacaaacatggcctgaggctccaaggtagttgaaggag
gaaggcaggcctgcaatgtgtccctattgatcctctgaggacagctcagc
acattttccccccaaattgggaggggcttaccctaattctgttgcctgcc
tgtagctcctgctcccttaactgggctttcttatctggcctcagtgggag
aggatgtacctagtcctgcagtgacttgaggtgccagtgtagtccagttc
cctgggaaggacctcccctttctcagaggtgaaagagaggggagaaattc
tctctctctacatcagtccttctaagtttcataagaaccaggtctcaagg
tcaggttgttttgctgttgttgttgtggtggtggtggtggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90029082_90029575
seq2: B6Ng01-100N24.b_184_257 (reverse)

seq1  CATCATCATCATCAGCAGCAGCAGCAGCAGCACCTGGTAAACCACATAGA  50
      |||||||||||||||||||||||||||||||| | |  | | ||     |
seq2  CATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAGCAGCA  50

seq1  ATAGAA-------AAAAAAATGTGACGTTTGATGGGTGGGGTACTCTGGA  93
      |||| |        | ||| || |                          
seq2  ATAGTAGCAGGGGTAGAAACTGGG--------------------------  74

seq1  AATCAATTCTGAAAACTGTTATAGAGGAAATTAAAACTTGGCAACTGCCA  143
                                                        
seq2  --------------------------------------------------  74

seq1  GTAATAGCTTCCACTTTTTCAACAACTAGAAAACTCTTGAGCTGGGCAGT  193
                                                        
seq2  --------------------------------------------------  74

seq1  GGTGGCTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCT  243
                                                        
seq2  --------------------------------------------------  74

seq1  GGTCTACAGGACAGCCAAGGCAACACAGAGAAACTCTGTCTCAAAAAATC  293
                                                        
seq2  --------------------------------------------------  74

seq1  AAAAACAAACAAACAAACAAACAAACAAACACCTCCAAAACAAAACAAAT  343
                                                        
seq2  --------------------------------------------------  74

seq1  AACAACCAAACAACAACAACAAACCAGAAAACTCTCCAAAACGTATTCTC  393
                                                        
seq2  --------------------------------------------------  74

seq1  TGGTGTATTGTGAAGGAATTATTGCATAGGCATTGCTTATTAAAACACTT  443
                                                        
seq2  --------------------------------------------------  74

seq1  AACAGGTGGTCAGCTCAACATCTAGCCTGTCTCCTCTCCCTAGAAACTGG  493
                                                        
seq2  --------------------------------------------------  74

seq1  G  494
       
seq2  -  74

seq1: chr7_70617703_70618102
seq2: B6Ng01-100N24.g_69_468 (reverse)

seq1  ATCACCACCACCACCACCACAACAACAACAGCAAAACAACCTGACCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCACCACCACCACCACAACAACAACAGCAAAACAACCTGACCTTGA  50

seq1  GACCTGGTTCTTATGAAACTTAGAAGGACTGATGTAGAGAGAGAGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTTCTTATGAAACTTAGAAGGACTGATGTAGAGAGAGAGAATTT  100

seq1  CTCCCCTCTCTTTCACCTCTGAGAAAGGGGAGGTCCTTCCCAGGGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCTCTTTCACCTCTGAGAAAGGGGAGGTCCTTCCCAGGGAACTG  150

seq1  GACTACACTGGCACCTCAAGTCACTGCAGGACTAGGTACATCCTCTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACACTGGCACCTCAAGTCACTGCAGGACTAGGTACATCCTCTCCCA  200

seq1  CTGAGGCCAGATAAGAAAGCCCAGTTAAGGGAGCAGGAGCTACAGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCAGATAAGAAAGCCCAGTTAAGGGAGCAGGAGCTACAGGCAGG  250

seq1  CAACAGAATTAGGGTAAGCCCCTCCCAATTTGGGGGGAAAATGTGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAATTAGGGTAAGCCCCTCCCAATTTGGGGGGAAAATGTGCTGAG  300

seq1  CTGTCCTCAGAGGATCAATAGGGACACATTGCAGGCCTGCCTTCCTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCAGAGGATCAATAGGGACACATTGCAGGCCTGCCTTCCTCCTT  350

seq1  CAACTACCTTGGAGCCTCAGGCCATGTTTGTTATTTGTCAGCCTGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACCTTGGAGCCTCAGGCCATGTTTGTTATTTGTCAGCCTGAATTC  400