BAC Information

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BAC

Clone NameB6Ng01-101B09
Chromosome4 (Build37)
Map Location 134,699,815 - 134,824,005
singlet/doubletdoublet
Overlap geneRunx3, Clic4
Upstream geneCcdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
Downstream geneLOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101B09.bB6Ng01-101B09.g
ACCDH910386DH910387
length3571,014
definitionDH910386|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B09, 5' end.DH910387|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,699,815 - 134,700,171)(134,822,982 - 134,824,005)
sequence
ctcactgtctagtgtctgtctctcacagcatgcagctcactagctccatt
ctctttctagaacattcttagaacttactttccttgtgtggagccgagag
cgagcactccccgtctccccgtctcccattccacctcagcatcctgtggt
cattgccacagggggttcttcaatagatttaaaagcgagccaggcatggt
ggtacatacctgagatcttaggacccaggagatagacaagggaggatcgg
gaattatcctcagcaacacaaagtgcaaggccagttagggatctatgccg
ccctgtgctgctgctgctgcgatgatgatgatggtgatggtgatgatggt
ggtgatg
gaattcaatgccagcctggaccatatggtgataacctgtctcggagaggg
ctgggttgtaactgggtagtagaggtcttgcttagcttgttaggtcctag
gattgatctccagtaccacaaaacaaatggcaaggtgctatgtgcttatg
gagtcaaatatggttcatggtaagttagctagacataaagattgaagtag
gcttgaacttgaccctgaaaacgtagggaactaggtaggttagaggtagc
taagaaggagttaagacatcacgtgtgaagtccctcaggagcagctgggt
ctctgaaaggaggagccagatagtgtgcatttattttcacaggctttgct
ctctggggacaccccccccccccctgccggcctgctgtctgcccacctct
tccttagcccatttgggaaggtgtgagcggatcctgctgccagtccgaac
tgggagttttttatgtttagtttcaagggcagacttcagtgctttcaatc
cattttctatagaaaagtggtgcggagaccgaaccattgaactgaagaat
caatgtaaaaagacaacgctcctttgtctaactgctttgctcatttgggg
tgtccagaggggaacttagaatttggaaatagtgtcaactgtgaggtcaa
tggaaactgccttgctccttttaccctgggctgttttctggagacctaca
gcgggctgctttctgtccagtaccaaggcggtgatttggtgaactataaa
attctgaccggagctcagactaaggatgagatgggagcctgagcacaggg
gacgcctaatgcactagtgacagaaagggacatcagttgttttggaagga
tgcctgagggtgccttagaagccaggagggggtggtgagcaagacttccc
ttccccctgcttccccggcagaggaggctccacttctctttttccgtggt
tccgagtaggaatgatctctggaaatgactaaggcagtatgggagtgtga
ttatgcaggtgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134699815_134700171
seq2: B6Ng01-101B09.b_55_411

seq1  CTCACTGTCTAGTGTCTGTCTCTCACAGCATGCAGCTCACTAGCTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTCTAGTGTCTGTCTCTCACAGCATGCAGCTCACTAGCTCCATT  50

seq1  CTCTTTCTAGAACATTCTTAGAACTTACTTTCCTTGTGTGGAGCCGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTAGAACATTCTTAGAACTTACTTTCCTTGTGTGGAGCCGAGAG  100

seq1  CGAGCACTCCCCGTCTCCCCGTCTCCCATTCCACCTCAGCATCCTGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCACTCCCCGTCTCCCCGTCTCCCATTCCACCTCAGCATCCTGTGGT  150

seq1  CATTGCCACAGGGGGTTCTTCAATAGATTTAAAAGCGAGCCAGGCATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCACAGGGGGTTCTTCAATAGATTTAAAAGCGAGCCAGGCATGGT  200

seq1  GGTACATACCTGAGATCTTAGGACCCAGGAGATAGACAAGGGAGGATCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATACCTGAGATCTTAGGACCCAGGAGATAGACAAGGGAGGATCGG  250

seq1  GAATTATCCTCAGCAACACAAAGTGCAAGGCCAGTTAGGGATCTATGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCCTCAGCAACACAAAGTGCAAGGCCAGTTAGGGATCTATGCCG  300

seq1  CCCTGTGCTGCTGCTGCTGCGATGATGATGATGGTGATGGTGATGATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCTGCTGCTGCTGCGATGATGATGATGGTGATGGTGATGATGGT  350

seq1  GGTGATG  357
      |||||||
seq2  GGTGATG  357

seq1: chr4_134822982_134824005
seq2: B6Ng01-101B09.g_70_1083 (reverse)

seq1  ACTCATCCTGCCTTAATCACACTTCCCATACTGCCTAACTCATTTCCCAG  50
      ||||| |||| | ||||||||| ||||||||||||| | |||||| ||||
seq2  ACTCA-CCTG-CATAATCACAC-TCCCATACTGCCTTAGTCATTT-CCAG  46

seq1  AGACTCATTCCCTACTCCGGAAACACCGGAAAAGGAGAAGTGGAGCCTCC  100
      ||| ||||| |||||| ||||| || ||||||| ||||||||||||||||
seq2  AGA-TCATT-CCTACT-CGGAACCA-CGGAAAAAGAGAAGTGGAGCCTCC  92

seq1  TCTGCCGGGGAAGCAGGGGGAAGGGGAAGTCTTGCTCACCACCCCCCTCC  150
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TCTGCCGGGGAAGCAGGGGGAA-GGGAAGTCTTGCTCACCA-CCCCCTCC  140

seq1  TGGCTTCT-AGGCACCCCTCAGGCATCCTTCCAAAACAACCTGATGTCCC  199
      |||||||| ||||| |||||||||||||||||||||||| ||||||||||
seq2  TGGCTTCTAAGGCA-CCCTCAGGCATCCTTCCAAAACAA-CTGATGTCCC  188

seq1  TTTCCTGTCACTAGTGCATTAGGCGTCCCCTGTGCTCAGGCTCCCATCTC  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTT-CTGTCACTAGTGCATTAGGCGTCCCCTGTGCTCAGGCTCCCATCTC  237

seq1  ATCCTTAGTCTGAGCTCCGGTCAGAATTTTATAGTTCACCAAATCACCGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGTCTGAGCTCCGGTCAGAATTTTATAGTTCACCAAATCACCGC  287

seq1  CTTGGTACTGGACAG-AAGCAGCCCGCTGTAGGTCTCCAG-AAACAGCCC  347
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  CTTGGTACTGGACAGAAAGCAGCCCGCTGTAGGTCTCCAGAAAACAGCCC  337

seq1  AGGGTAAAAGGAGCAAGGCAGTTTCCATTGACCTCACAGTTGACACTATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAAAGGAGCAAGGCAGTTTCCATTGACCTCACAGTTGACACTATT  387

seq1  TCCAAATTCTAAGTTCCCCTCTGGACACCCCAAATGAGCAAAGCAGTTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTCTAAGTTCCCCTCTGGACACCCCAAATGAGCAAAGCAGTTAG  437

seq1  ACAAAGGAGCGTTGTCTTTTTACATTGATTCTTCAGTTCAATGGTTCGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAGCGTTGTCTTTTTACATTGATTCTTCAGTTCAATGGTTCGGT  487

seq1  CTCCGCACCACTTTTCTATAGAAAATGGATTGAAAGCACTGAAGTCTGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCACCACTTTTCTATAGAAAATGGATTGAAAGCACTGAAGTCTGCC  537

seq1  CTTGAAACTAAACATAAAAAACTCCCAGTTCGGACTGGCAGCAGGATCCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACTAAACATAAAAAACTCCCAGTTCGGACTGGCAGCAGGATCCG  587

seq1  CTCACACCTTCCCAAATGGGCTAAGGAAGAGGTGGGCAGACAGCAGGCCG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCTTCCCAAATGGGCTAAGGAAGAGGTGGGCAGACAGCAGGCCG  637

seq1  GCAGGGGGGGGGGGGGTGTCCCCAGAGAGCAAAGCCTGTGAAAATAAATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGGGGGGGGGGTGTCCCCAGAGAGCAAAGCCTGTGAAAATAAATG  687

seq1  CACACTATCTGGCTCCTCCTTTCAGAGACCCAGCTGCTCCTGAGGGACTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATCTGGCTCCTCCTTTCAGAGACCCAGCTGCTCCTGAGGGACTT  737

seq1  CACACGTGATGTCTTAACTCCTTCTTAGCTACCTCTAACCTACCTAGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTGATGTCTTAACTCCTTCTTAGCTACCTCTAACCTACCTAGTTC  787

seq1  CCTACGTTTTCAGGGTCAAGTTCAAGCCTACTTCAATCTTTATGTCTAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGTTTTCAGGGTCAAGTTCAAGCCTACTTCAATCTTTATGTCTAGC  837

seq1  TAACTTACCATGAACCATATTTGACTCCATAAGCACATAGCACCTTGCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACCATGAACCATATTTGACTCCATAAGCACATAGCACCTTGCCA  887

seq1  TTTGTTTTGTGGTACTGGAGATCAATCCTAGGACCTAACAAGCTAAGCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTGGTACTGGAGATCAATCCTAGGACCTAACAAGCTAAGCAA  937

seq1  GACCTCTACTACCCAGTTACAACCCAGCCCTCTCCGAGACAGGTTATCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTACTACCCAGTTACAACCCAGCCCTCTCCGAGACAGGTTATCAC  987

seq1  CATATGGTCCAGGCTGGCATTGAATTC  1024
      |||||||||||||||||||||||||||
seq2  CATATGGTCCAGGCTGGCATTGAATTC  1014