BAC Information

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BAC

Clone NameB6Ng01-101I12
Chromosome4 (Build37)4 (Build37)
Map Location 93,520,988 - 93,522,17093,412,115 - 93,413,226
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101I12.bB6Ng01-101I12.g
ACCDH910687DH910688
length1,1651,097
definitionDH910687|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I12, 5' end.DH910688|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,520,988 - 93,522,170)(93,412,115 - 93,413,226)
sequence
gaattcatacaacatattttgcttctcctcctaccacttctctaagactc
tcctcaacttccttacctaccaaagttcatgttatttttctctctgtgtc
ttaaacacaacaataaaagacaaaaacaaaatcaaggaatatactttgtg
ttgccttgacaggcactgaagacgtaattttctcttgcacagcaggcagt
aattgcaaatcatttcttggtcttaggtaggatgtgcctacttcccatgc
tggaatttttttgtagcttgaatttttgcagatctcatgcatgttgtctc
agtctttgtgagttcataaatgcatcagccgtgatgggtgtggaaaatgc
tgtttcaatgaagtcatccactacctttggcttttatgttctacttctgc
ataaatccttgatccttgagaagggtatgctaaagacatcccatttaggg
atgagaattccaaagtctttgcatgtttcctggttatcagtttctatggc
taaatattaattactgcaaggacaagcatctctaatgagtattgagtaat
gtgctgatcagtgggtataatgacacgtcattaggagatttttttttatt
tctacattaatttagcagaataaaagtagtaggttttctaatagtatcag
tatctgatctatactcaggttcttggtctctttgacagtgtcaggtataa
attctatcttgtgaaagaagccttaaattctcccaaaaggtggttggcta
cactcctaaaatttgtaccaccatttccccagtgggtatactatcagaca
tgttgctattatagcttgcattgttcctagactaaagattattattgctt
ctcgagtagtattcatagcacattttaatactgttaacactagctagtag
ggtttccaattgaatatcagctaaatttctctgaaatatgatataagtgt
gtggcattttcaacaataagtcttactgtcaaggtgtggaggataataaa
cagcctggacaagtctttagtgtatgacatcattcaaagctgtgtaatat
cccagaaaaattaattccatggctggtctggctcttctattgggattgct
catacatttattatcttcttaacctcttccttgccatcattgatcttgct
caggatcttgacata
gaattctatatctacacaagcaccacatgttacttgagtataagtaacgt
ctgcctacatgaagggttaatactaagtgtgaaattctaatagaagacac
tatgtttagacttaatagtagtagcaaataaaacaccgaagcccttccag
ggataacagattggcaaagaaattgcatgtgaactaaaaacaaatctcac
acaatgtataatgaaggcactcctgaaggttttgttgtaagcataaaaca
agaacagaaaggcaaaagtggcctgccaacttgctttctgcatcaatgtt
tttaccatagtgaagagtatctttgtgaaactgttcagccatttttattt
ttatcttaaaagcaacatactttatattttagtatagtaaacatgctttt
ttgaggaaaacaggtagtaattatggccctatatattgacttgtagggtt
tcatcatttacaaaaaaatatatatatatatatcatgactgctcatcatt
attatgccacagagccttaacaaacataaatgttttagttatgttttagg
gaaacaaatccttactaggtacctgagtaacagcctttattttgtgttcc
tctcttgactatgctattaaagatatgacacaagttatcactgcttcctg
aaacccctgcttagcctatcatcaacagacatacatttgctataaatttt
aggcttggggttaatgaatatactctaaactgtactaagaaagagaatag
caatatttaatctcaataattccgcagtaaaggtaattaagtaattatgt
tacaatttcaactgaggcaaagaaaacaatcaaaggagaaaaaagaaaca
cacataaaataaatgaacataataaatgaaaattcatttcatccaatata
tgattaacaactcatagctcaaggaatgcagtttaaatgataaaaatatt
catttgatataacctcattttgcttcttgtagccctgtagcatgctttga
tgtcatatttctttactcaatgttgttctgttttcgtctcttgaaatacc
atatataagaaattttgacttttgtcaaaacttgaagcacttaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93520988_93522170
seq2: B6Ng01-101I12.b_44_1208 (reverse)

seq1  TATGTCAAGATCATTGAGGACAAGAATTCAATGATTGACAAAGAAGAGTG  50
      ||||||||||||  ||||  |||||  ||||||| || ||| |||||| |
seq2  TATGTCAAGATC-CTGAG--CAAGA--TCAATGA-TGGCAAGGAAGAG-G  43

seq1  TTAAAGAAGATAATTAAAATGTATTGAGGCAATACCAATAGTAGAGCCAG  100
      || |||||||||||  ||||||| ||| ||||| ||||||| ||||||||
seq2  TT-AAGAAGATAAT--AAATGTA-TGA-GCAATCCCAATAGAAGAGCCAG  88

seq1  ACCAGCCATGGAATAAATATTCTTGGGATATTACACAGCTTTGAATTGAT  150
      |||||||||||||| ||| ||  |||||||||||||||||||||| ||||
seq2  ACCAGCCATGGAATTAATTTTTCTGGGATATTACACAGCTTTGAA-TGAT  137

seq1  GGTCAATAACACTAAAGACTTGTCCAGGCTGTTTATTATCCTCCACACCT  200
       ||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  -GTCA--TACACTAAAGACTTGTCCAGGCTGTTTATTATCCTCCACACCT  184

seq1  TGACAGTAAGACTTATTGTTGAAAATGCCACACACTTATATCATATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAAGACTTATTGTTGAAAATGCCACACACTTATATCATATTTCA  234

seq1  GGAGAAATTTAGCTGATATTCAATTGGAAAACCCTACTAGCTAGTGTTAA  300
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -GAGAAATTTAGCTGATATTCAATTGG-AAACCCTACTAGCTAGTGTTAA  282

seq1  CAGTATTAAAATGTGCTATGAATACTACTCGAGAAGCAATAATAATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTAAAATGTGCTATGAATACTACTCGAGAAGCAATAATAATCTTT  332

seq1  AGTCTAGGAACAATGCAAGCTATAATAGCAACATGTCTGATAGTATACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGAACAATGCAAGCTATAATAGCAACATGTCTGATAGTATACCC  382

seq1  ACTGGGGAAATGGTGGTACAAATTTTAGGAGTGTAGCCAACCACCTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAAATGGTGGTACAAATTTTAGGAGTGTAGCCAACCACCTTTTG  432

seq1  GGAGAATTTAAGGCTTCTTTCACAAGATAGAATTTATACCTGACACTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTAAGGCTTCTTTCACAAGATAGAATTTATACCTGACACTGTC  482

seq1  AAAGAGACCAAGAACCTGAGTATAGATCAGATACTGATACTATTAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACCAAGAACCTGAGTATAGATCAGATACTGATACTATTAGAAAA  532

seq1  CCTACTACTTTTATTCTGCTAAATTAATGTAGAAATAAAAAAAAATCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTACTTTTATTCTGCTAAATTAATGTAGAAATAAAAAAAAATCTCC  582

seq1  TAATGACGTGTCATTATACCCACTGATCAGCACATTACTCAATACTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACGTGTCATTATACCCACTGATCAGCACATTACTCAATACTCATT  632

seq1  AGAGATGCTTGTCCTTGCAGTAATTAATATTTAGCCATAGAAACTGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCTTGTCCTTGCAGTAATTAATATTTAGCCATAGAAACTGATAA  682

seq1  CCAGGAAACATGCAAAGACTTTGGAATTCTCATCCCTAAATGGGATGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAACATGCAAAGACTTTGGAATTCTCATCCCTAAATGGGATGTCT  732

seq1  TTAGCATACCCTTCTCAAGGATCAAGGATTTATGCAGAAGTAGAACATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATACCCTTCTCAAGGATCAAGGATTTATGCAGAAGTAGAACATAA  782

seq1  AAGCCAAAGGTAGTGGATGACTTCATTGAAACAGCATTTTCCACACCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAGGTAGTGGATGACTTCATTGAAACAGCATTTTCCACACCCAT  832

seq1  CACGGCTGATGCATTTATGAACTCACAAAGACTGAGACAACATGCATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTGATGCATTTATGAACTCACAAAGACTGAGACAACATGCATGAG  882

seq1  ATCTGCAAAAATTCAAGCTACAAAAAAATTCCAGCATGGGAAGTAGGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAAAATTCAAGCTACAAAAAAATTCCAGCATGGGAAGTAGGCAC  932

seq1  ATCCTACCTAAGACCAAGAAATGATTTGCAATTACTGCCTGCTGTGCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACCTAAGACCAAGAAATGATTTGCAATTACTGCCTGCTGTGCAAG  982

seq1  AGAAAATTACGTCTTCAGTGCCTGTCAAGGCAACACAAAGTATATTCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTACGTCTTCAGTGCCTGTCAAGGCAACACAAAGTATATTCCTT  1032

seq1  GATTTTGTTTTTGTCTTTTATTGTTGTGTTTAAGACACAGAGAGAAAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTTTTGTCTTTTATTGTTGTGTTTAAGACACAGAGAGAAAAAT  1082

seq1  AACATGAACTTTGGTAGGTAAGGAAGTTGAGGAGAGTCTTAGAGAAGTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAACTTTGGTAGGTAAGGAAGTTGAGGAGAGTCTTAGAGAAGTGG  1132

seq1  TAGGAGGAGAAGCAAAATATGTTGTATGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  TAGGAGGAGAAGCAAAATATGTTGTATGAATTC  1165

seq1: chr4_93412115_93413226
seq2: B6Ng01-101I12.g_69_1165 (reverse)

seq1  AGTTTAAAGTGCTTCCAGTTTTTGGACCAAAAAAGTCAAAATTTC-TATA  49
      ||||| ||||||||| ||||||  |||   ||||||||||||||| ||||
seq2  AGTTT-AAGTGCTTCAAGTTTT--GAC---AAAAGTCAAAATTTCTTATA  44

seq1  TATGGTAATTTACAAGAGACGAAAAACAGAACAACATTGAGTAAAGAAAT  99
      |||||||  || ||||||||| ||||||||||||||||||||||||||||
seq2  TATGGTA--TTTCAAGAGACG-AAAACAGAACAACATTGAGTAAAGAAAT  91

seq1  ATTGACATCAAAGCATGCCTTACAGGGCTACAAGAAGCAAAATGAGGTTA  149
      | ||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  A-TGACATCAAAGCATGC--TACAGGGCTACAAGAAGCAAAATGAGGTTA  138

seq1  TATCAAATGAATATTTTTATCATTTAAACTGCATTCCTTGAGCTATGAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATGAATATTTTTATCATTTAAACTGCATTCCTTGAGCTATGAGT  188

seq1  TGTTAATCATATATTGGATGAAATGAATTTTCATTTTATTTATGTTTCAT  249
      ||||||||||||||||||||||||||||||||||||   ||||| |||||
seq2  TGTTAATCATATATTGGATGAAATGAATTTTCATTT--ATTATG-TTCAT  235

seq1  TTATTTTATGTGTGTTTTCTTTTTTCTCCTTTGATTGTTTTCTTTGCCTC  299
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGTGTG-TTTCTTTTTTCTCCTTTGATTGTTTTCTTTGCCTC  284

seq1  AGTTGAAATTGTAACATAATTACTTAATTACCTTTACTGCGGAATTATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAATTGTAACATAATTACTTAATTACCTTTACTGCGGAATTATTG  334

seq1  AGATTAAATATTGCTATTCTCTTTCTTAGTACAGTTTAGAGTATATTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAATATTGCTATTCTCTTTCTTAGTACAGTTTAGAGTATATTCAT  384

seq1  TAACCCCAAGCCTAAAATTTATAGCAAATGTATGTCTGTTGATGATAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAAGCCTAAAATTTATAGCAAATGTATGTCTGTTGATGATAGGC  434

seq1  TAAGCAGGGGTTTCAGGAAGCAGTGATAACTTGTGTCATATCTTTAATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGGGTTTCAGGAAGCAGTGATAACTTGTGTCATATCTTTAATAG  484

seq1  CATAGTCAAGAGAGGAACACAAAATAAAGGCTGTTACTCAGGTACCTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCAAGAGAGGAACACAAAATAAAGGCTGTTACTCAGGTACCTAGT  534

seq1  AAGGATTTGTTTCCCTAAAACATAACTAAAACATTTATGTTTGTTAAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTGTTTCCCTAAAACATAACTAAAACATTTATGTTTGTTAAGGC  584

seq1  TCTGTGGCATAATAATGATGAGCAGTCATGATATATATATATATATTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCATAATAATGATGAGCAGTCATGATATATATATATATATTTTT  634

seq1  TTGTAAATGATGAAACCCTACAAGTCAATATATAGGGCCATAATTACTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATGATGAAACCCTACAAGTCAATATATAGGGCCATAATTACTAC  684

seq1  CTGTTTTCCTCAAAAAAGCATGTTTACTATACTAAAATATAAAGTATGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCCTCAAAAAAGCATGTTTACTATACTAAAATATAAAGTATGTT  734

seq1  GCTTTTAAGATAAAAATAAAAATGGCTGAACAGTTTCACAAAGATACTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAGATAAAAATAAAAATGGCTGAACAGTTTCACAAAGATACTCT  784

seq1  TCACTATGGTAAAAACATTGATGCAGAAAGCAAGTTGGCAGGCCACTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGGTAAAAACATTGATGCAGAAAGCAAGTTGGCAGGCCACTTTT  834

seq1  GCCTTTCTGTTCTTGTTTTATGCTTACAACAAAACCTTCAGGAGTGCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTGTTCTTGTTTTATGCTTACAACAAAACCTTCAGGAGTGCCTT  884

seq1  CATTATACATTGTGTGAGATTTGTTTTTAGTTCACATGCAATTTCTTTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATACATTGTGTGAGATTTGTTTTTAGTTCACATGCAATTTCTTTGC  934

seq1  CAATCTGTTATCCCTGGAAGGGCTTCGGTGTTTTATTTGCTACTACTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTTATCCCTGGAAGGGCTTCGGTGTTTTATTTGCTACTACTATT  984

seq1  AAGTCTAAACATAGTGTCTTCTATTAGAATTTCACACTTAGTATTAACCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAACATAGTGTCTTCTATTAGAATTTCACACTTAGTATTAACCC  1034

seq1  TTCATGTAGGCAGACGTTACTTATACTCAAGTAACATGTGGTGCTTGTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTAGGCAGACGTTACTTATACTCAAGTAACATGTGGTGCTTGTGT  1084

seq1  AGATATAGAATTC  1112
      |||||||||||||
seq2  AGATATAGAATTC  1097