BAC Information

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BAC

Clone NameB6Ng01-101O12
Chromosome2 (Build37)4 (Build37)
Map Location 55,096,076 - 55,096,61833,423,116 - 33,424,009
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC626563, LOC100041792, LOC100042878, Galnt13
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101O12.bB6Ng01-101O12.g
ACCDH910952DH910953
length947901
definitionDH910952|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O12, 5' end.DH910953|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,096,076 - 55,096,618)(33,423,116 - 33,424,009)
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttagtcatcagggaaatgcaaatcaaaacaaccctaagat
tccatctcacaccaatcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgctagtg
ggattgcaagcttgtacaaccattctagaaatcagtctggcagtttctca
gaaaatggacatggtactaccggagaatcccgcaatacctctattgggca
tatatccaaaagatattccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagcaagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctgaagggcatcatcctgcgtgaggtaacccaatcacaaaa
gaactcacacaatatgtactcactgataagtggatattagccctgatctc
ttcttaatcaccactactttcttagctccagataaccagcatcaatgatc
ccagtaactccttttactcatgactctaaagtcagagccacgtggccaaa
gctgctgagctctgctgcttgctggggttggaacatggcttccctgcttc
ccttgttctatgatatcctcgccagctttctgttttccaattccttcatt
gcctaagcttggctatcctgaatctttctctgaagactgacctttaactc
aagcgatctgaatgcctgtctcctacgtactgggattaaagatgcctgga
cttaagcttttcttttaccttctcacaagatctttataattcttggg
gaattctatgttaagatggggaggaaggattgtgcgagccagagggttca
aggacaccaccaaggaatccacagaatcaactaaacagggctcatagcat
ctcaaaaagactaaacagacaaccagggagcctatataataggtctgacc
cagatcttctgcatatatgctatggttgtataacttggtgttctttgagg
gctgtctccaactctagtctgcctttgggaccctttttctcctactgggt
taccttgtccagccctgatatgagggtatgtgcctagacttactgtaact
tgatatgccgtatttggttgatatctctgggaggcctgctcttttctgaa
gggaaacaggaagagtggttcttgggaagtggaagggacttggtggagag
aagggagaagatgtaacatatgaaagaagaaaaaagatattttaatattt
actgtaagcatgatggttaagagagagaggctctcgggtacaaggcacag
ctgggcatatttaagataattttacagggatattgacacaacttgagtat
tctcagtatattacaggtcttagagctttgcttttagaatatattttttg
gtatttagttttctaatgctagaaagagcctttattaaacaactgatttt
ttaaaagttcttttttagataggctgtcagtatatagcctagctagcctc
aaacttactgtgtagccccaggctggtcttaaacttgtggacttcctgcc
tcagctaccatattgctggaatgacaggtatcatcacagctgatactaga
agtgtggttttctttttaaagatttattttatgtgtataagtgtttgctt
gcttgtattgaaacactttgcatgtctttttgcttgcatgtagtgtgtgt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55096076_55096618
seq2: B6Ng01-101O12.b_119_652

seq1  AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG  50
      |||||||||||||||||||||| |||||||| ||||||||| ||||||||
seq2  AAATGCAAATCAAAACAACCCTAAGATTCCATCTCACACCAATCAGAATG  50

seq1  GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA  100

seq1  AAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCAC  150
      ||||||||||||||||||||| | |||||| |||| ||||||||||||| 
seq2  AAGAGGAACACTCCTCCATTGCTAGTGGGATTGCAAGCTTGTACAACCAT  150

seq1  TCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCG  200
      ||| |||||||||||||||||| ||||||||| ||||||| |||||||||
seq2  TCTAGAAATCAGTCTGGCAGTTTCTCAGAAAA-TGGACATGGTACTACCG  199

seq1  GAGGATCTAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC  250
      ||| |||  |||||||||||  |||||||||||||| |||||   |||||
seq2  GAGAATCCCGCAATACCTCTATTGGGCATATATCCAAAAGATATTCCAAC  249

seq1  TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA  299

seq1  TAGCCAGAAGATGGAAAGAACCCAGATGCCCCTCAACAGAGAAATGGATA  350
      |||| ||||| |||||||||||||||||||||||||||||| ||||||||
seq2  TAGCAAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA  349

seq1  CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA  399

seq1  GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA  450
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  GAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGAAGGGCATCA  449

seq1  TCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCA  500
      ||||| |||||||||| || ||||||| ||||||||||||||||||||||
seq2  TCCTGCGTGAGGTAACCCAATCACAAAAGAACTCACACAATATGTACTCA  499

seq1  CTGATAAGTGGATATTAGCCCAAAACCTGTTCTATCTTCTTAA  543
      |||||||||||||||||||      |||| ||  |||||||||
seq2  CTGATAAGTGGATATTAGC------CCTGATC--TCTTCTTAA  534

seq1: chr4_33423116_33424009
seq2: B6Ng01-101O12.g_70_970

seq1  GAATTCTATG-GAAGATGGGGAGGAAGGATTGTGCGAGCCAGAGGGTTCA  49
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTTAAGATGGGGAGGAAGGATTGTGCGAGCCAGAGGGTTCA  50

seq1  AGGACACCACCAAGGAATCCACAGAATCAACTAAACAGGGCTCATAGCAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCACCAAGGAATCCACAGAATCAACTAAACAGGGCTCATAGCAT  100

seq1  CTCAAAAAGACTAAACAGACAACCAGGGAGCCTATATAATAGGTCTGACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAGACTAAACAGACAACCAGGGAGCCTATATAATAGGTCTGACC  150

seq1  CAGATCTTCTGCATATATGCTATGGTTGTATAACTTGGTGTTCTTTGAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTCTGCATATATGCTATGGTTGTATAACTTGGTGTTCTTTGAGG  200

seq1  GCTGTCTCCAACTCTAGTCTGCCTTTGGGACCCTTTTTCTCCTACTGGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCAACTCTAGTCTGCCTTTGGGACCCTTTTTCTCCTACTGGGT  250

seq1  TACCTTGTCCAGCCCTGATATGAGGGTATGTGCCTAGACTTACTGTAACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTCCAGCCCTGATATGAGGGTATGTGCCTAGACTTACTGTAACT  300

seq1  TGATATGCCGTATTTGGTTGATATCTCTGGGAGGCCTGCTCTTTTCTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGCCGTATTTGGTTGATATCTCTGGGAGGCCTGCTCTTTTCTGAA  350

seq1  GGGAAACAGGAAGAGTGGTTCTTGGGAAGTGGAAGGGACTTGGTGGAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAGGAAGAGTGGTTCTTGGGAAGTGGAAGGGACTTGGTGGAGAG  400

seq1  AAGGGAGAAGATGTAACATATGAAAGAAGAAAAAAGATATTTTAATATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAAGATGTAACATATGAAAGAAGAAAAAAGATATTTTAATATTT  450

seq1  ACTGTAAGCATGATGGTTAAGAGAGAGAGGCTCTCGGGTACAAGGCACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGCATGATGGTTAAGAGAGAGAGGCTCTCGGGTACAAGGCACAG  500

seq1  CTGGGCATATTTAAGATAATTTTACAGGGATATTGACACAACTTGAGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATATTTAAGATAATTTTACAGGGATATTGACACAACTTGAGTAT  550

seq1  TCTCAGTATATTACAGGTCTTAGAGCTTTGCTTTTAGAATATA-TTTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCAGTATATTACAGGTCTTAGAGCTTTGCTTTTAGAATATATTTTTTG  600

seq1  GTATTTAG-TTTCTAATGCTAGAAAGAGCC-TTATTAAACAACTGA-TTT  645
      |||||||| ||||||||||||||||||||| ||||||||||||||| |||
seq2  GTATTTAGTTTTCTAATGCTAGAAAGAGCCTTTATTAAACAACTGATTTT  650

seq1  TTAAAAGTTC-TTTTTAGATAGGCTGTCAGTATATAGCCTAGCTAGCCTC  694
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTCTTTTTTAGATAGGCTGTCAGTATATAGCCTAGCTAGCCTC  700

seq1  AAACTTACTGTGTAG-CCCAGGCTGGTCTTAAACTTGTGGACTTCCTGCC  743
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAACTTACTGTGTAGCCCCAGGCTGGTCTTAAACTTGTGGACTTCCTGCC  750

seq1  TCAGCTACCATAGTGCTGGAATGACAGGTATCATCACAGCTGATACTAGA  793
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACCATATTGCTGGAATGACAGGTATCATCACAGCTGATACTAGA  800

seq1  AGTGT-GTTTTCTTTTTAAAGATTTATTTTATGTGTATGAGTGTTTTGCT  842
      ||||| |||||||||||||||||||||||||||||||| |||| ||||||
seq2  AGTGTGGTTTTCTTTTTAAAGATTTATTTTATGTGTATAAGTG-TTTGCT  849

seq1  TGCATGTATGTGTAACAC-TTGCATGTC-TTTTGCTTGCATGTATGTGTG  890
      ||| ||||| || ||||| ||||||||| ||||||||||||||| |||||
seq2  TGCTTGTAT-TGAAACACTTTGCATGTCTTTTTGCTTGCATGTA-GTGTG  897

seq1  TGTA  894
      ||||
seq2  TGTA  901