BAC Information

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BAC

Clone NameB6Ng01-102A08
Chromosome4 (Build37)
Map Location 41,148,913 - 41,277,427
singlet/doubletdoublet
Overlap geneUbap2, Wdr40a
Upstream geneDdx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2
Downstream geneUbap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1, Ccl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102A08.bB6Ng01-102A08.g
ACCDH911031DH911032
length1,241864
definitionDH911031|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A08, 5' end.DH911032|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,148,913 - 41,150,177)(41,276,562 - 41,277,427)
sequence
gaattccatcagattctgagttccaaccaatgctctgaactaaatggatc
aagaaccctaaccagaaggtctgggtgacaagctaactccttttcttgca
ccctattccaacaatgtatctttggagtcagggtgaacctaagtcagata
tttatcaatcattcttactcatattaaagtggataggctaagaactgggg
acaggacagggactaagtgtgtgcttgcggtcccctccctctgcttcccc
aggatcctgacagcagaaacattacacgtagtcaaggttttcattcctag
tgagtttgggatatcacaaggacaaaccctaggccacatatgaaagttgg
gtctacacgacacgccccatgctttctcactgtggtgcacatacctgctg
agctgagagagagggctgctggacagttcagcagcagccggggtcaggga
gggcaaggtggcagtgtgctgggctgaggagggcagaagtgcagtgcagg
aggcggggccgggcagggtgctcacagatgggagtgcggaagggtctgtc
ttctttggagctggaacggatgaagtagctgtaagacatgtaccacttta
gctccagaagcattcttcagtaggggagacacagtcagtatctggtccca
tgcagttaaggggcacagcatggtatgtttcctggaactgtgtacaagca
tatcatcagacagctctaatccttgcagctaggaccacagaaccagatgt
gataggtttggacaaggaacagaaaatgacacctttaaattgtcttgact
cggacatatttctcccatttccagaagcttgacataagcacccagaaaag
ctgggcaaaatctgagtgtacacagtgagacaattttcctttcaaaagca
tggcatgagggagtgagggtagatgtgggagaccgccccagagcatttcc
atccacttggcaccagcgaagaagtccagctgccagagtgcataggcacc
tgaggcaatgtgaaagtctgctcactcagcactgcaggagagtgcacacc
acacacttgcaaggcacagtgggactttcttggttttgtttcaaagatta
tcaagagccacgataatagtttttatgtttccaggggtgcaaggaccaat
atgtacttcggaagactcagcatttatacattcacaatagtccgaatttg
gcttgacctcacatctgccttttctcagggataggagagag
gaattcatacatgctgctactggtgggttagagaagagcttaattggcaa
ctacagcaaccatggttgagaaaccatcactttggaggctaagagagaaa
gtttgtgagctttaggtcaacttggattacatagtaagttcaaaaattgg
aaaactattagacaacatacccaatagcaataagacttgacttagaaacc
cgagatatgattactgttggattttgattcgatcaagttagttaagagta
gtagaatgatgggcaatggtggctcacacatttaatcccagcacctggga
agcagaagcaggccaatattttgagttcaaggccagtctggtctacagag
tgaattccaggtcagccatgtctacacagagaaatcctgtcttaaaaaaa
acaatccccacccctccacaggtctccaattagctctgaagagatactcg
tattgataaatatagatggagcattttgtgtgtgtagggaggggatttct
ggtatgtttctaggttagcctagacctcttgtttttcctctcgagtgcca
gagtgcaggtgtgccccataacctcagctgttctgaagtatctaggatca
gagcaacctcttggcactggttgtggacaaagaggctttatagtgggttg
gcctcatgctgcttgtattccaatgctaattctggttcctccagagctgg
ttgccctagagatgagggtgcacaagaacccaagtgacctttgtgacctt
gcccccaagttatttctgattggtgaataaagatatccacagctaatagc
tgggcaaagagagagacatagcgggttttgggttcccgggcctggggtgg
gggtcgggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_41148913_41150177
seq2: B6Ng01-102A08.b_46_1286

seq1  GAATTCCATCAGATTCTGAGTTCCAACCAATGCTCTGAACTAAATGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGATTCTGAGTTCCAACCAATGCTCTGAACTAAATGGATC  50

seq1  AAGAACCCTAACCAGAAGGTCTGGGTGACAAGCTAACTCCTTTTCTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCTAACCAGAAGGTCTGGGTGACAAGCTAACTCCTTTTCTTGCA  100

seq1  CCCTATTCCAACAATGTATCTTTGGAGTCAGGGTGAACCTAAGTCAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTCCAACAATGTATCTTTGGAGTCAGGGTGAACCTAAGTCAGATA  150

seq1  TTTATCAATCATTCTTACTCATATTAAAGTGGATAGGCTAAGAACTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAATCATTCTTACTCATATTAAAGTGGATAGGCTAAGAACTGGGG  200

seq1  ACAGGACAGGGACTAAGTGTGTGCTTGCGGTCCCCTCCCTCTGCTTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAGGGACTAAGTGTGTGCTTGCGGTCCCCTCCCTCTGCTTCCCC  250

seq1  AGGATCCTGACAGCAGAAACATTACACGTAGTCAAGGTTTTCATTCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTGACAGCAGAAACATTACACGTAGTCAAGGTTTTCATTCCTAG  300

seq1  TGAGTTTGGGATATCACAAGGACAAACCCTAGGCCACATATGAAAGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGGGATATCACAAGGACAAACCCTAGGCCACATATGAAAGTTGG  350

seq1  GTCTACACGACACGCCCCATGCTTTCTCACTGTGGTGCACATACCTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACGACACGCCCCATGCTTTCTCACTGTGGTGCACATACCTGCTG  400

seq1  AGCTGAGAGAGAGGGCTGCTGGACAGTTCAGCAGCAGCCGGGGTCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAGAGAGGGCTGCTGGACAGTTCAGCAGCAGCCGGGGTCAGGGA  450

seq1  GGGCAAGGTGGCAGTGTGCTGGGCTGAGGAGGGCAGAAGTGCAGTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGTGGCAGTGTGCTGGGCTGAGGAGGGCAGAAGTGCAGTGCAGG  500

seq1  AGGCGGGGCCGGGCAGGGTGCTCACAGATGGGAGTGCGGAAGGGTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGGCCGGGCAGGGTGCTCACAGATGGGAGTGCGGAAGGGTCTGTC  550

seq1  TTCTTTGGAGCTGGAACGGATGAAGTAGCTGTAAGACATGTACCACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGAGCTGGAACGGATGAAGTAGCTGTAAGACATGTACCACTTTA  600

seq1  GCTCCAGAAGCATTCTTCAGTAGGGGAGACACAGTCAGTATCTGGTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAAGCATTCTTCAGTAGGGGAGACACAGTCAGTATCTGGTCCCA  650

seq1  TGCAGTTAAGGGGCACAGCATGGTATGTTTCCTGGAACTGTGTACAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTAAGGGGCACAGCATGGTATGTTTCCTGGAACTGTGTACAAGCA  700

seq1  TATCATCAGACAGCTCTAATCCTTGCAGCTAGGACCACAGAACCAGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCAGACAGCTCTAATCCTTGCAGCTAGGACCACAGAACCAGATGT  750

seq1  GATAGGTTTGGACAAGGAACAGAAAATGACACCTTTAAATTGTCTTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTTTGGACAAGGAACAGAAAATGACACCTTTAAATTGTCTTGACT  800

seq1  CGGACATATTTCTCCCATTTCCAGAAGCTTGACATAAGCACCCAGAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACATATTTCTCCCATTTCCAGAAGCTTGACATAAGCACCCAGAAAAG  850

seq1  CTGGGCAAAATCTGAGTGTACACAGTGAGACAATTTTCCTTTCAAAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAAATCTGAGTGTACACAGTGAGACAATTTTCCTTTCAAAAGCA  900

seq1  TGGCATGAGGGAGTGAGGGTAGATGTGGGAGACCGCCCCAGAGCATTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGAGGGAGTGAGGGTAGATGTGGGAGACCGCCCCAGAGCATTTCC  950

seq1  ATCCACTTGGCACCAGCGAAGAAGGTCCAGGCTGCCAGAGTGCATAGGCA  1000
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  ATCCACTTGGCACCAGCGAAGAA-GTCCA-GCTGCCAGAGTGCATAGGCA  998

seq1  CCTGAGGGCAAATGTGAAAGGTCTGCTCACTCAGCACTGCAGGGAGAGTG  1050
      |||||||   ||||||||| ||||||||||||||||||||| ||||||||
seq2  CCTGAGG--CAATGTGAAA-GTCTGCTCACTCAGCACTGCA-GGAGAGTG  1044

seq1  CACACCAACACCAACTTGCAAAGGCACAGTGGGAACTTTCTTGGGTTTTG  1100
      |||||| ||||  |||||| ||||||||||||| |||||||| |||||||
seq2  CACACC-ACAC--ACTTGC-AAGGCACAGTGGG-ACTTTCTT-GGTTTTG  1088

seq1  TTTCAAAAGATTAATCAAAGAGCACAGATAATAAGGTTTTTATGTTT-CA  1149
      |||| ||||||| ||| ||||||   |||||||  |||||||||||| ||
seq2  TTTC-AAAGATT-ATC-AAGAGCCACGATAATA--GTTTTTATGTTTCCA  1133

seq1  GGGGTGCTATGGACACAATTAATGACCTTCGGAAAAGACTCAGCATTATT  1199
      ||||||| | |||| ||||  |||  ||||||  |||||||||||||  |
seq2  GGGGTGC-AAGGAC-CAAT--ATGTACTTCGG--AAGACTCAGCATTTAT  1177

seq1  ACCATCCACACATATAAGTCAGATATGTGCTTGGAAACATCA---CTGCC  1246
      | ||| ||||   || |||| ||  |  |||||   || |||   |||||
seq2  A-CATTCACA---AT-AGTCCGAATTTGGCTTG---ACCTCACATCTGCC  1219

seq1  TTTTC-CAGG--TAGGAGAGAG  1265
      ||||| ||||  ||||||||||
seq2  TTTTCTCAGGGATAGGAGAGAG  1241

seq1: chr4_41276562_41277427
seq2: B6Ng01-102A08.g_69_932 (reverse)

seq1  CCCCCACCCGACCCCCACCCCAGGCCCGGGAACCCAAAACCCGCCTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCCCACCCGACCCCCACCCCAGGCCCGGGAACCCAAAACCCG-CTATGT  49

seq1  CTCTCTCTTTTGCCCAGCTATTAGCTGTGGATATCTTTATTCACCAATCA  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTC-TTTGCCCAGCTATTAGCTGTGGATATCTTTATTCACCAATCA  98

seq1  GAAATAACTTGGGGGCAAGGTCACAAAGGTCACTTGGGTTCTTGTGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACTTGGGGGCAAGGTCACAAAGGTCACTTGGGTTCTTGTGCACC  148

seq1  CTCATCTCTAGGGCAACCAGCTCTGGAGGAACCAGAATTAGCATTGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCTAGGGCAACCAGCTCTGGAGGAACCAGAATTAGCATTGGAAT  198

seq1  ACAAGCAGCATGAGGCCAACCCACTATAAAGCCTCTTTGTCCACAACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGCATGAGGCCAACCCACTATAAAGCCTCTTTGTCCACAACCAG  248

seq1  TGCCAAGAGGTTGCTCTGATCCTAGATACTTCAGAACAGCTGAGGTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGAGGTTGCTCTGATCCTAGATACTTCAGAACAGCTGAGGTTATG  298

seq1  GGGCACACCTGCACTCTGGCACTCGAGAGGAAAAACAAGAGGTCTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACCTGCACTCTGGCACTCGAGAGGAAAAACAAGAGGTCTAGGCT  348

seq1  AACCTAGAAACATACCAGAAATCCCCTCCCTACACACACAAAATGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGAAACATACCAGAAATCCCCTCCCTACACACACAAAATGCTCCA  398

seq1  TCTATATTTATCAATACGAGTATCTCTTCAGAGCTAATTGGAGACCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTATCAATACGAGTATCTCTTCAGAGCTAATTGGAGACCTGTG  448

seq1  GAGGGGTGGGGATTGTTTTTTTTAAGACAGGATTTCTCTGTGTAGACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGGGGATTGTTTTTTTTAAGACAGGATTTCTCTGTGTAGACATG  498

seq1  GCTGACCTGGAATTCACTCTGTAGACCAGACTGGCCTTGAACTCAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTGGAATTCACTCTGTAGACCAGACTGGCCTTGAACTCAAAATA  548

seq1  TTGGCCTGCTTCTGCTTCCCAGGTGCTGGGATTAAATGTGTGAGCCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGCTTCTGCTTCCCAGGTGCTGGGATTAAATGTGTGAGCCACCA  598

seq1  TTGCCCATCATTCTACTACTCTTAACTAACTTGATCGAATCAAAATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATCATTCTACTACTCTTAACTAACTTGATCGAATCAAAATCCAA  648

seq1  CAGTAATCATATCTCGGGTTTCTAAGTCAAGTCTTATTGCTATTGGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCATATCTCGGGTTTCTAAGTCAAGTCTTATTGCTATTGGGTAT  698

seq1  GTTGTCTAATAGTTTTCCAATTTTTGAACTTACTATGTAATCCAAGTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAATAGTTTTCCAATTTTTGAACTTACTATGTAATCCAAGTTGA  748

seq1  CCTAAAGCTCACAAACTTTCTCTCTTAGCCTCCAAAGTGATGGTTTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCTCACAAACTTTCTCTCTTAGCCTCCAAAGTGATGGTTTCTCA  798

seq1  ACCATGGTTGCTGTAGTTGCCAATTAAGCTCTTCTCTAACCCACCAGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTTGCTGTAGTTGCCAATTAAGCTCTTCTCTAACCCACCAGTAG  848

seq1  CAGCATGTATGAATTC  866
      ||||||||||||||||
seq2  CAGCATGTATGAATTC  864