BAC Information

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BAC

Clone NameB6Ng01-102C22
Chromosome4 (Build37)
Map Location 154,763,840 - 154,918,441
singlet/doubletdoublet
Overlap geneGabrd, 2010015L04Rik, Tmem52, Gnb1
Upstream genePrdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz
Downstream geneNadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102C22.bB6Ng01-102C22.g
ACCDH911148DH911149
length1,2081,143
definitionDH911148|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C22, 5' end.DH911149|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,763,840 - 154,765,064)(154,917,300 - 154,918,441)
sequence
gaattctacacaatcaagcactctaaagcctcccctttccctgctgagct
ggaaacttgcatattttttttaaggactttcaccagaaaccccacttaca
aggaaaaggtcatgtcctaaacttcttgtgtaatttggtggcttctggtt
ctaccagggtattgccagagctgccctatatcctcagttatcaggagagg
aaaaaaataaataaataaaaagaagaagaagaaaaaggcttcttagcaac
actttgagatgcaactagaaaaccacaaaaagggtatttatggctaaaac
taagacaatcgagacgctcccttgagaagcctgtatgctcttcttcccac
tgcttgcgtttgggaagcaaacatatgctgtatggccgtccttctgactg
atttctcttcccttaaccctcatgtttaagcatatattaaaatattgcta
ataaaatttgtctctgtaactccaacactcaggagacggaagcaggtaga
tgcctgtgagttcagaaagctgatcttttatatagtgagttccaagctag
ccagagctacacaatgagatcctgccttataaacaaacaaacaaacaaac
aaacaaacaaacatcatctctatctttactcaataaactagttagtccca
aattttttctgctctgtagccacaaatcctaatattgcctgagttgaggt
ccctaaaagtttgggacacccctccaatggatccaaagctgcatgtgagg
cagacattggaacccaccctaccatcaaagcaggcgctgccaaagcagga
ggcccatggcagcctctccatactttcctctgcttgctgaaactgagttc
ctacccttcctcactgcccctacccccagccttcgtttccaccgggaacc
ccagtatgggaccttatctgagcgtaaagtcgttgtgagtgttgttaggg
aaagaccacattgcagtagggcaggcctcttagaggaagtggatggcaga
gatgggaaagcagatatgacaaggcagaggctggtggtgcttctacatga
gagaggactgagtactgctgctgaactagaaacagagcagctgggcactg
ttctcagaatggtccagaaggtttggggtctcttgcctccagagtacaaa
gaatcagctcagtgttgaggcaccagattgggttaattctgtgggcagcc
taggacac
gaattctccatcctcttacctccacttcatgagaggtgggattacaaatt
atcatgatgtccagttttatggtgctgggatagacctagaactgtgtgtg
ctaggaaaatactctaccaacgaatctacatcgccagcccctagaagagt
aatttaaatactactgatcaaaatttacaggaagccatgcctgtatggat
tttgccttttttttttctttccccttcaagacagggcttctctgtatagt
ctcggctatcctggaactcactttgtagaccaggctggcctcgatctcag
aaatcctcctgcctctacctcctcccgagtgctgggattaaaggcgtgcg
ccaccactcccagcctggatttggccacttttaagttcatatatttgaga
aagaagagatctaaaactggtggcttatgcttccagctaaagccagaata
ttaagaagcaagcattcctgaagtagttataaacactggcaatgtaactt
aagaagcaccaaaggatgcaatcctacctgaccctaagggttaaaacaca
aaactgccatgttcttcatgacagttaattatgaacaatcctttgcttac
atgcgaagagtgttttacctatcactgcgggacaggatagatagaaaata
ctatgagactttcttccttggaaaggcaatgtgtcctaaatggtgttgta
tgaattccaaaaatatgcacccaacattttaatgctggttacattcaaaa
ggtgaatggaccacagactctcttcggcctcctctaaaaaagcactggtc
agtgagcacaaacagatatgggctgtgcatatggaacacttgcttagact
aggagaattcctgtgctaatgtccaagcatggaaggcagtttaaaaacag
gactgaaacatcaattcgttgataaacaagaatggctgaagcagctggga
attcgaaaactggctaaaaaaccagtttccatgtttcttaaagatgaaag
catattgggcccttgtttgctcactttcagaaaatttctgccggttactt
tcacttttacttgaccaatatcaacaagaatccaagagcagtatacattc
caggtagcagcctaatccactggaacatgagaatgtgtacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154763840_154765064
seq2: B6Ng01-102C22.b_45_1252

seq1  GAATTCTACACAATCAAGCACTCTAAAGCCTCCCCTTTCCCTGCTGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACAATCAAGCACTCTAAAGCCTCCCCTTTCCCTGCTGAGCT  50

seq1  GGAAACTTGCATATTTTTTTTAAGGACTTTCACCAGAAACCCCACTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTGCATATTTTTTTTAAGGACTTTCACCAGAAACCCCACTTACA  100

seq1  AGGAAAAGGTCATGTCCTAAACTTCTTGTGTAATTTGGTGGCTTCTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGGTCATGTCCTAAACTTCTTGTGTAATTTGGTGGCTTCTGGTT  150

seq1  CTACCAGGGTATTGCCAGAGCTGCCCTATATCCTCAGTTATCAGGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGGTATTGCCAGAGCTGCCCTATATCCTCAGTTATCAGGAGAGG  200

seq1  AAAAAAATAAATAAATAAAAAGAAGAAGAAGAAAAAGGCTTCTTAGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAAATAAATAAAAAGAAGAAGAAGAAAAAGGCTTCTTAGCAAC  250

seq1  ACTTTGAGATGCAACTAGAAAACCACAAAAAGGGTATTTATGGCTAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGATGCAACTAGAAAACCACAAAAAGGGTATTTATGGCTAAAAC  300

seq1  TAAGACAATCGAGACGCTCCCTTGAGAAGCCTGTATGCTCTTCTTCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAATCGAGACGCTCCCTTGAGAAGCCTGTATGCTCTTCTTCCCAC  350

seq1  TGCTTGCGTTTGGGAAGCAAACATATGCTGTATGGCCGTCCTTCTGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCGTTTGGGAAGCAAACATATGCTGTATGGCCGTCCTTCTGACTG  400

seq1  ATTTCTCTTCCCTTAACCCTCATGTTTAAGCATATATTAAAATATTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTCCCTTAACCCTCATGTTTAAGCATATATTAAAATATTGCTA  450

seq1  ATAAAATTTGTCTCTGTAACTCCAACACTCAGGAGACGGAAGCAGGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTGTCTCTGTAACTCCAACACTCAGGAGACGGAAGCAGGTAGA  500

seq1  TGCCTGTGAGTTCAGAAAGCTGATCTTTTATATAGTGAGTTCCAAGCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGAGTTCAGAAAGCTGATCTTTTATATAGTGAGTTCCAAGCTAG  550

seq1  CCAGAGCTACACAATGAGATCCTGCCTTATAAACAAACAAACAAACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTACACAATGAGATCCTGCCTTATAAACAAACAAACAAACAAAC  600

seq1  AAACAAACAAACATCATCTCTATCTTTACTCAATAAACTAGTTAGTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACATCATCTCTATCTTTACTCAATAAACTAGTTAGTCCCA  650

seq1  AATTTTTTCTGCTCTGTAGCCACAAATCCTAATATTGCCTGAGTTGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTCTGCTCTGTAGCCACAAATCCTAATATTGCCTGAGTTGAGGT  700

seq1  CCCTAAAAGTTTGGGACACCCCTCCAATGGATCCAAAGCTGCATGTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAGTTTGGGACACCCCTCCAATGGATCCAAAGCTGCATGTGAGG  750

seq1  CAGACATTGGAACCCACCCTACCATCAAAGCAGGCGCTGCCAAAGCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTGGAACCCACCCTACCATCAAAGCAGGCGCTGCCAAAGCAGGA  800

seq1  GGCCCATGGCAGCCTCTCCATACTTTCCTCTGCTTGCTGAAACTGAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGGCAGCCTCTCCATACTTTCCTCTGCTTGCTGAAACTGAGTTC  850

seq1  CTACCCTTCCTCACTGCCCCTACCCCCAGCCTTCGTTTCCACCGGGAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTCCTCACTGCCCCTACCCCCAGCCTTCGTTTCCACCGGGAACC  900

seq1  CCAGTATGGGACCTTATCTGAGCGTAAAGTCGTTGTGAGTGTTGTTAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATGGGACCTTATCTGAGCGTAAAGTCGTTGTGAGTGTTGTTAGGG  950

seq1  AAAGACCACATTGCAGTAGGGCAGGCCTCTTAGAGGAAAGTGGATGGCAG  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGACCACATTGCAGTAGGGCAGGCCTCTTAGAGG-AAGTGGATGGCAG  999

seq1  AGATGGGAAAGCAGATAATGACAAGGCAGAGGCTGGGTGGTGCCTCTACA  1050
      |||||||||||||||| ||||||||||||||||| |||||||| ||||| 
seq2  AGATGGGAAAGCAGAT-ATGACAAGGCAGAGGCT-GGTGGTGCTTCTAC-  1046

seq1  AGGAGAGGAGGACTGAGTACTGCTGGCTGACACTAGAAACAGGAGGCAAG  1100
      | |||| ||||||||||||||||| ||||| |||||||||||   |||  
seq2  ATGAGA-GAGGACTGAGTACTGCT-GCTGA-ACTAGAAACAG--AGCA--  1089

seq1  CCTGGGGCAACTGTCCTCAG-ATGGTCCAGAGGGTTGGGGGTCTC-TGCC  1148
       |||||   ||||| ||||| |||||||||| |||| |||||||| ||||
seq2  GCTGGG--CACTGTTCTCAGAATGGTCCAGAAGGTTTGGGGTCTCTTGCC  1137

seq1  TCAGAAGTACAAAAGAATCAGTTC-CTGTTGTTTGAAGGCACCCAGTTTG  1197
      ||   ||||| |||||||||| ||  |||||     ||||| |||| |||
seq2  TCCAGAGTAC-AAAGAATCAGCTCAGTGTTG-----AGGCA-CCAGATTG  1180

seq1  TGTAATTTCTTGTGGCAGCCTAGGACAC  1225
       || | ||||   |||||||||||||||
seq2  GGTTAATTCTGTGGGCAGCCTAGGACAC  1208

seq1: chr4_154917300_154918441
seq2: B6Ng01-102C22.g_68_1210 (reverse)

seq1  CAGGTACACA-TCTCATGTTCCAGTGGTGTAAGCTGCTAACTGGGATGTA  49
      |||||||||| ||||||||||||||||  || ||||||| |||| |||||
seq2  CAGGTACACATTCTCATGTTCCAGTGGATTAGGCTGCTACCTGGAATGTA  50

seq1  TACTGCTCTTGTGATC-TGTTGATTATTGGTTCAAGTAAAAGTGAAAGTA  98
      |||||||||||   || |||||| |||||| |||||||||||||||||||
seq2  TACTGCTCTTGGATTCTTGTTGA-TATTGG-TCAAGTAAAAGTGAAAGTA  98

seq1  ACGGCCAGAAATTTTCTGAAAGTGAAGCCAAACCAGGG-CCAATATGCCT  147
      || | ||||||||||||||||||||   ||||| |||| ||||||||| |
seq2  ACCGGCAGAAATTTTCTGAAAGTGA--GCAAACAAGGGCCCAATATGCTT  146

seq1  TCATCTTTAAGAAACATGGAAACTGGTTTTTTAGCCAGTTTTCGAATTCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTAAGAAACATGGAAACTGGTTTTTTAGCCAGTTTTCGAATTCC  196

seq1  CAGCTGCTTCAGCCATTCTTGTTTATCAACGAATTGATGTTTCAGTCCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTTCAGCCATTCTTGTTTATCAACGAATTGATGTTTCAGTCCTG  246

seq1  TTTTTAAACTGCCTTCCATGCTTGGACATTAGCACAGGAATTCTCCTAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACTGCCTTCCATGCTTGGACATTAGCACAGGAATTCTCCTAGT  296

seq1  CTAAGCAAGTG-TCCATATGCACAG-CCATATCTGTTTGTGCTCACTGAC  345
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  CTAAGCAAGTGTTCCATATGCACAGCCCATATCTGTTTGTGCTCACTGAC  346

seq1  CAGTGCTTTTTTAGAGGAGGCCGAAGAGAGTCTGTGGTCCATTCACCTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTTTTAGAGGAGGCCGAAGAGAGTCTGTGGTCCATTCACCTTT  396

seq1  TGAATGTAACCAGCATTAAAATGTTGGGTGCATATTTTTGGAATTCATAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAACCAGCATTAAAATGTTGGGTGCATATTTTTGGAATTCATAC  446

seq1  AACACCATTTAGGACACATTGCCTTTCCAAGGAAGAAAGTCTCATAGTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATTTAGGACACATTGCCTTTCCAAGGAAGAAAGTCTCATAGTAT  496

seq1  TTTCTATCTATCCTGTCCCGCAGTGATAGGTAAAACACTCTTCGCATGTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTATCCTGTCCCGCAGTGATAGGTAAAACACTCTTCGCATGTA  546

seq1  AGCAAAGGATTGTTCATAATTAACTGTCATGAAGAACATGGCAGTTTTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGATTGTTCATAATTAACTGTCATGAAGAACATGGCAGTTTTGT  596

seq1  GTTTTAACCCTTAGGGTCAGGTAGGATTGCATCCTTTGGTGCTTCTTAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAACCCTTAGGGTCAGGTAGGATTGCATCCTTTGGTGCTTCTTAAG  646

seq1  TTACATTGCCAGTGTTTATAACTACTTCAGGAATGCTTGCTTCTTAATAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGCCAGTGTTTATAACTACTTCAGGAATGCTTGCTTCTTAATAT  696

seq1  TCTGGCTTTAGCTGGAAGCATAAGCCACCAGTTTTAGATCTCTTCTTTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTAGCTGGAAGCATAAGCCACCAGTTTTAGATCTCTTCTTTCT  746

seq1  CAAATATATGAACTTAAAAGTGGCCAAATCCAGGCTGGGAGTGGTGGCGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATGAACTTAAAAGTGGCCAAATCCAGGCTGGGAGTGGTGGCGC  796

seq1  ACGCCTTTAATCCCAGCACTCGGGAGGAGGTAGAGGCAGGAGGATTTCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTCGGGAGGAGGTAGAGGCAGGAGGATTTCTG  846

seq1  AGATCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGATAGCCGAGACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGATAGCCGAGACT  896

seq1  ATACAGAGAAGCCCTGTCTTGAAGGGGAAAGAAAAAAAAAAGGCAAAATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAAGCCCTGTCTTGAAGGGGAAAGAAAAAAAAAAGGCAAAATC  946

seq1  CATACAGGCATGGCTTCCTGTAAATTTTGATCAGTAGTATTTAAATTACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGCATGGCTTCCTGTAAATTTTGATCAGTAGTATTTAAATTACT  996

seq1  CTTCTAGGGGCTGGCGATGTAGATTCGTTGGTAGAGTATTTTCCTAGCAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGGGCTGGCGATGTAGATTCGTTGGTAGAGTATTTTCCTAGCAC  1046

seq1  ACACAGTTCTAGGTCTATCCCAGCACCATAAAACTGGACATCATGATAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTCTAGGTCTATCCCAGCACCATAAAACTGGACATCATGATAAT  1096

seq1  TTGTAATCCCACCTCTCATGAAGTGGAGGTAAGAGGATGGAGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATCCCACCTCTCATGAAGTGGAGGTAAGAGGATGGAGAATTC  1143