BAC Information

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BAC

Clone NameB6Ng01-102J17
Chromosome7 (Build37)4 (Build37)
Map Location 7,385,639 - 7,386,0965,775,917 - 5,777,010
singlet/doubletsingletsinglet
Overlap geneVmn2r-ps36
Upstream geneOlfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
Downstream geneV2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102J17.bB6Ng01-102J17.g
ACCDH911446DH911447
length1,1241,074
definitionDH911446|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J17, 5' end.DH911447|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,385,639 - 7,386,096)(5,775,917 - 5,777,010)
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgaccatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatacctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtagcttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgtaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgagagactatttataactgcttctatttct
ttaggggatatgggacagtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggagtttgtccctgtgccctctagtgagtctagctaatggtttatcta
tcttgttgattttctcaaagaaccaactcctcctttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttaggtgtgttgtcaagctgctagtatgtgctctctcccgtttcttc
tggagcactcatagctatgagtttccctctagaaatgctttcattgtgtc
ccaagtttgggtacgtgttgctcatttcattaaactctaaatgtctttaa
tttctttcttatctcttgacaggtatcattgagagagtgtggtcagtttc
acgtgagtgttgcttccataattt
gaattccaatctccattgtcaggatagcagcagcccagttcagtagtgtc
agaataccaaacatgagtaagtagcagtggtatgatccagcaggaacaac
caggccttcgccaaatcagcaaggagcaatcaggaacagccaggaggcca
tgaaaagttctcagccatgaaaagttctctcagtgatgtgaagatcagca
aagacaaagcattgtgagtgaggctaaccatgcaagcacactgtcagggt
cagttgagtccgatttatactccctctaaaaatcatgtgtcctcccgtgg
gtcttgcctctgccaaataccatgtgagtctgcatcacatgacatgacta
gaaacttccatttcaattggtcatggggattcaccatagggttatgatga
gagtgttttcaggagaggacggatggaacaggagctgctagcgcaaggta
agatgccaggtaataaataccctgtggctgggaaactgggttagagtagc
tcagctacagtgcaagaagcttattaacaaacatgacagggctccacatc
attatttcagagctagggcgggcataaagaaagcttctttacttttacag
ctatgtactgagcgtttccaagagatctgatggtctgagggtccaggaat
agagacagtagacatgatgctgtggatcctaaatattaaagaagacactg
aacctactcaaatttaactaaccttaccagggtaggaagtattaggactc
accagcatttcagaccaaagatggtttagcatatacccccacttaaaata
gaatgatctatgtctttcaattactagaaagacagggaatgacccagatg
tagctgtctcttgtgagactatgccggggcctagcaacacagaagtggat
gctcacagtcagctaatggatggatcacagggctcccatggaggagctag
agaagtacccaggagctaaagggatctgcaccctatagtgacacatatga
ctaccagtacccgagctctgactctagctgcatatgtatcaaagatgcta
gtcggcatcactgtaagagaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7385639_7386096
seq2: B6Ng01-102J17.b_730_1167 (reverse)

seq1  AAATAATGGAAGCCACCATTCACATGGAAACTGAACAACACTCTTCTCAA  50
      |||| ||||||| || || |||| | ||||||| || |||||| ||||||
seq2  AAATTATGGAAG-CAACACTCACGT-GAAACTG-ACCACACTC-TCTCAA  46

seq1  TGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAG  100
      ||||||||  ||||||  ||  || ||||||||||||||||||  |||||
seq2  TGATACCT--GTCAAG--AG--AT-AAGAAAGAAATTAAAGAC-ATTTAG  88

seq1  AGTTTAATGAAAATTTAGCCACAACATACCCAAACTTATGGGACACAATG  150
      ||||||||||||  | ||| || || ||||||||||  ||||||||||||
seq2  AGTTTAATGAAA--TGAGCAAC-ACGTACCCAAACT--TGGGACACAATG  133

seq1  CAAGCATTTCTAAGAGGTAAACTCATAGCTCTGAGTGCCTCCAAAAAGAA  200
       |||||||||| ||||| |||||||||||| |||||| |||| | |||||
seq2  AAAGCATTTCT-AGAGGGAAACTCATAGCTATGAGTG-CTCC-AGAAGAA  180

seq1  ACTGGAGAGAGCACACACTAGCAGCTTGACAACATATGTAAAAGCTCTAG  250
      || |||||||||||| |||||||||||||||||| |  ||||||||||||
seq2  ACGGGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAG  230

seq1  AAAAAAAGCAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATC  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATC  280

seq1  AAACTCAGAGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAACG  350
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  AAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAG  330

seq1  AATCAACAAAATGAGTACCTGGTTCTTTGAGAAAATCCACAAGATAGATA  400
      ||| ||| ||| ||| |  |||||||||||||||||| ||||||||||||
seq2  AATTAACCAAAGGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATA  380

seq1  AACTCTTATCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAAC  450
      |||  ||| | |||||||||||||||||||||||||   |||||||||||
seq2  AACCATTAGCTAGACTCACTAGAGGGCACAGGGACAAACTCCTAATTAAC  430

seq1  AAAATCAG  458
      ||||||||
seq2  AAAATCAG  438

seq1: chr4_5775917_5777010
seq2: B6Ng01-102J17.g_66_1139

seq1  GAATTCCAATCTCCATTGTCAGGATAGCAGCAGCCCAGTTCAGTAGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTCCATTGTCAGGATAGCAGCAGCCCAGTTCAGTAGTGTC  50

seq1  AGAATACCAAACATGAGTAAGTAGCAGTGGTATGATCCAGCAGGAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACCAAACATGAGTAAGTAGCAGTGGTATGATCCAGCAGGAACAAC  100

seq1  CAGGCCTTCGCCAAATCAGCAAGGAGCAATCAGGAACAGCCAGGAGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTCGCCAAATCAGCAAGGAGCAATCAGGAACAGCCAGGAGGCCA  150

seq1  TGAAAAGTTCTCAGCCATGAAAAGTTCTCTCAGTGATGTGAAGATCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTCTCAGCCATGAAAAGTTCTCTCAGTGATGTGAAGATCAGCA  200

seq1  AAGACAAAGCATTGTGAGTGAGGCTAACCATGCAAGCACACTGTCAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGCATTGTGAGTGAGGCTAACCATGCAAGCACACTGTCAGGGT  250

seq1  CAGTTGAGTCCGATTTATACTCCCTCTAAAAATCATGTGTCCTCCCGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGTCCGATTTATACTCCCTCTAAAAATCATGTGTCCTCCCGTGG  300

seq1  GTCTTGCCTCTGCCAAATACCATGTGAGTCTGCATCACATGACATGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCTCTGCCAAATACCATGTGAGTCTGCATCACATGACATGACTA  350

seq1  GAAACTTCCATTTCAATTGGTCATGGGGATTCACCATAGGGTTATGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCCATTTCAATTGGTCATGGGGATTCACCATAGGGTTATGATGA  400

seq1  GAGTGTTTTCAGGAGAGGACGGATGGAACAGGAGCTGCTAGCGCAAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTTCAGGAGAGGACGGATGGAACAGGAGCTGCTAGCGCAAGGTA  450

seq1  AGATGCCAGGTAATAAATACCCTGTGGCTGGGAAACTGGGTTAGAGTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAGGTAATAAATACCCTGTGGCTGGGAAACTGGGTTAGAGTAGC  500

seq1  TCAGCTACAGTGCAAGAAGCTTATTAACAAACATGACAGGGCTCCACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACAGTGCAAGAAGCTTATTAACAAACATGACAGGGCTCCACATC  550

seq1  ATTATTTCAGAGCTAGGGCGGGCATAAAGAAAGCTTCTTTACTTTTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCAGAGCTAGGGCGGGCATAAAGAAAGCTTCTTTACTTTTACAG  600

seq1  CTATGTACTGAGCGTTTCCAAGAGATCTGATGGTCTGAGGGTCCAGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTACTGAGCGTTTCCAAGAGATCTGATGGTCTGAGGGTCCAGGAAT  650

seq1  AGAGACAGTAGACATGATGCTGTGGATCCTAAATATTAAAGAAGACACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTAGACATGATGCTGTGGATCCTAAATATTAAAGAAGACACTG  700

seq1  AACCTACTCAAATTTAACTAACCTTACCAGGGTAGGAAGTATTAGGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACTCAAATTTAACTAACCTTACCAGGGTAGGAAGTATTAGGACTC  750

seq1  ACCAGCATTTCAGACCAAAGATGGTTTAGCATATACCCCCACTTAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATTTCAGACCAAAGATGGTTTAGCATATACCCCCACTTAAAATA  800

seq1  GAATGATCTATGTCTTTCAATTACTAGAAAGACAGGGAATGACCCAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATCTATGTCTTTCAATTACTAGAAAGACAGGGAATGACCCAGATG  850

seq1  TAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGC-AACACAGAAGTGGA  899

seq1  TGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCC-ATGGAGGAGCT  948

seq1  AGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAAC  1000
      |||| |||||||| ||||||||||||||||||| |||||||| |||  ||
seq2  AGAG-AAGTACCC-AGGAGCTAAAGGGATCTGC-ACCCTATA-GTGACAC  994

seq1  AACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATAT  1050
      |    |||| ||| ||||||||||  |||||| |||||||||||||||||
seq2  A----TATG-ACT-ACCAGTACCC--GAGCTC-TGACTCTAGCTGCATAT  1035

seq1  GTATCAAAAGATGGCCTAGTCGGCCATCACTGTAAAGAGAGGCC  1094
      ||||| |||||||  |||||||| ||||||||| ||||||||||
seq2  GTATC-AAAGATG--CTAGTCGG-CATCACTGT-AAGAGAGGCC  1074