BAC Information

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BAC

Clone NameB6Ng01-102M09
Chromosome4 (Build37)
Map Location 8,662,367 - 8,790,008
singlet/doubletdoublet
Overlap geneChd7
Upstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760
Downstream geneLOC666782, LOC100039584, 4933402J24Rik, Asph, Gdf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102M09.bB6Ng01-102M09.g
ACCDH911569DH911570
length1,1781,095
definitionDH911569|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M09, 5' end.DH911570|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,788,820 - 8,790,008)(8,662,367 - 8,663,463)
sequence
gaattcacagcagaaacatggggcacacgtgaacctgcacacattcacgc
caaagacagagggtgcagggagctgtcaaggactcgctcagatgagaagc
aattaggcagaccccgtgaggcttcatagcccaggctctgaggtacttac
tggtacataactcggcatatcgacagtgtaggtggggtgcagcttcagcc
agtcaaccaagtccttgtttttaggagcgtcttctcccaccagcctagtc
ccatcttcaaggtttatcacagggatccgggtgtcggggtccagctgtcc
aggagaaggaatgtttcttattggtggggtctctatatcttcttcaaaag
ctttggtcacctcagcatcctcctgcaggaagcagacagtgatctgaatt
gtcacataagattctgagaacgctctactcaagaaagataccctcccagc
ccacaggatctttcatcaaaaagggagacgcgatcggaaacaatgccctt
gttaggatggctttcagagtagaagacaactcttgtagactcctcacaag
gtaggaacaacattcttcagtaggaaagcctagagggccaagcaagccac
taggactacaccaccatgctacatggtggtctgagctagagctgtgtgac
atgtgaccgctcagggatccctagacactgtcccgacaagcaccagttta
tcagtaagtggtttcccagcgctcggcgagcacagtctggccctgttggg
agagcaggtgtggaaagacccgaggttagcactccatgctcaccctgtca
ctgtccttaaatgctgtgctttcaacattccaacatccatttctccattc
cccagggctttctaaaatgcagtaagctccacccagttcaaaagctgcca
ttaagttactccccgaggtagctccccgatgtcttcaggacacccccatg
ttcttcagctcggcactctaggctttccacaacctgcatccctactcatc
tcgtgtctacatcttcatgacttcatcaaactgccagcaaaaacgcccgg
gtctcaaagctgggaagaaacctccggcccccagcacttctgctccagca
atatctccattagtgacagataacaacctcctccctccacttcagctttc
cttggagcttggagcatgccttgatgcc

gaattccctgttttcttgctgagaactgtctctagcagctgcacagtcag
ggattctgagaaacagagtgccccaaggaagaccatcaagacaaccacat
agcgatttagttctattttatctttctgagtgttcttacgggtaggtagg
tgtccagatcgcctccacggcatcctcggtgacatttaccctctttgttt
attcaaaaaggaaatcatggagctcacatgtctgtaaggttatttttagc
cagtttagaagtgggtcaaatgcgtttagaatgtggctcttgttggaaca
ttgcaaggtatggagtaggtgtgttctggctcctgacttctcatccgaac
caagtggcagcactttgtgtttctggtgattgtgaagagagagggccatg
gctgggagcccacaggtgactgtggccatacttccctttctgtaggtgcc
tggggcacagggtccctcagctgcctcatcatggggtcctaaggaagtgc
atctgagaagtgagtttgcttgacccctgcagtacacactatgtctagta
aagtaggtgctgatgtacttctagacaggaagggctagtaacgttagaat
gactactagtaacagtaattttaacctacagaagcttcagggatgcttca
gaaggtggcttagcagataaaaaaagagttcttactgcttttgcagggga
actaagcccacgtggcagctaatagttccaagggcttcagcgctctctct
gactgccatagccccccaccccaccccacacatagtgtttataaatgtac
atacattttcataatacacccccatacaacacatcacagacattcacata
cacatcacacatataccatacacacattgcacacacacacatacatatca
tacacacacataccatatacacattatacataccttacacacacagtata
catacataaacatcatatatatatcatacacaatcacacatcatacatat
cacacacatcacacacccacccacccccatatatatactacatgcataca
tacacatgtcatacatacaaacaccacattcaatcatacccatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8788820_8790008
seq2: B6Ng01-102M09.b_48_1225 (reverse)

seq1  GGCATCAAGGCATGCTCCCAGGGCTCCCAGGGAAAGCTTGGAGTGGAGGG  50
      |||||||||||||||||| |  ||| ||| ||||||| || |||||||||
seq2  GGCATCAAGGCATGCTCCAA--GCT-CCAAGGAAAGC-TGAAGTGGAGGG  46

seq1  AGGAGGTTGTTATCTGTCACTAAATGGGAGATATTGCTGGAGCAGAAGTG  100
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  AGGAGGTTGTTATCTGTCACTAA--TGGAGATATTGCTGGAGCAGAAGTG  94

seq1  CTGGGGTGCGAGAGTATCTCTCCAGCTTTGAGACCCGGGCGTTTTTTGCT  150
      ||||||  ||   || |||  |||||||||||||||||||| ||||||||
seq2  CTGGGGGCCGGAGGTTTCTTCCCAGCTTTGAGACCCGGGCG-TTTTTGCT  143

seq1  GGCAAGTTTGATGAAGTCATGAAGATGTAGACACGGAGATGAAGTAGGGA  200
      ||| |||||||||||||||||||||||||||||| |||||| ||||||||
seq2  GGC-AGTTTGATGAAGTCATGAAGATGTAGACAC-GAGATG-AGTAGGGA  190

seq1  TGCAGGTTGTGGAAAGCCTAGAGTGCCGAGCTGAAGAACATGGGGGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTGTGGAAAGCCTAGAGTGCCGAGCTGAAGAACATGGGGGTGTC  240

seq1  CTGAAGACATCGGGGAGCCTACCTCGGGGAGTAACTTAATGGCAGCTTTT  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGAAGACATCGGGGAG-CTACCTCGGGGAGTAACTTAATGGCAGCTTTT  289

seq1  GAACTGGGTGGAGCTTACTGCATTTTAGAAAGCCCTGGGGAATGGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGTGGAGCTTACTGCATTTTAGAAAGCCCTGGGGAATGGAGAAA  339

seq1  TGGATGTTGGAATGTTGAAAGCACAGCATTTAAGGACAGTGACAGGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTGGAATGTTGAAAGCACAGCATTTAAGGACAGTGACAGGGTGA  389

seq1  GCATGGAGTGCTAACCTCGGGTCTTTCCACACCTGCTCTCCCAACAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGTGCTAACCTCGGGTCTTTCCACACCTGCTCTCCCAACAGGGC  439

seq1  CAGACTGTGCTCGCCGAGCGCTGGGAAACCACTTACTGATAAACTGGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGCTCGCCGAGCGCTGGGAAACCACTTACTGATAAACTGGTGC  489

seq1  TTGTCGGGACAGTGTCTAGGGATCCCTGAGCGGTCACATGTCACACAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGGGACAGTGTCTAGGGATCCCTGAGCGGTCACATGTCACACAGCT  539

seq1  CTAGCTCAGACCACCATGTAGCATGGTGGTGTAGTCCTAGTGGCTTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCAGACCACCATGTAGCATGGTGGTGTAGTCCTAGTGGCTTGCTT  589

seq1  GGCCCTCTAGGCTTTCCTACTGAAGAATGTTGTTCCTACCTTGTGAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTAGGCTTTCCTACTGAAGAATGTTGTTCCTACCTTGTGAGGAG  639

seq1  TCTACAAGAGTTGTCTTCTACTCTGAAAGCCATCCTAACAAGGGCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGAGTTGTCTTCTACTCTGAAAGCCATCCTAACAAGGGCATTGT  689

seq1  TTCCGATCGCGTCTCCCTTTTTGATGAAAGATCCTGTGGGCTGGGAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGATCGCGTCTCCCTTTTTGATGAAAGATCCTGTGGGCTGGGAGGGT  739

seq1  ATCTTTCTTGAGTAGAGCGTTCTCAGAATCTTATGTGACAATTCAGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTGAGTAGAGCGTTCTCAGAATCTTATGTGACAATTCAGATCA  789

seq1  CTGTCTGCTTCCTGCAGGAGGATGCTGAGGTGACCAAAGCTTTTGAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCTTCCTGCAGGAGGATGCTGAGGTGACCAAAGCTTTTGAAGAA  839

seq1  GATATAGAGACCCCACCAATAAGAAACATTCCTTCTCCTGGACAGCTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGAGACCCCACCAATAAGAAACATTCCTTCTCCTGGACAGCTGGA  889

seq1  CCCCGACACCCGGATCCCTGTGATAAACCTTGAAGATGGGACTAGGCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGACACCCGGATCCCTGTGATAAACCTTGAAGATGGGACTAGGCTGG  939

seq1  TGGGAGAAGACGCTCCTAAAAACAAGGACTTGGTTGACTGGCTGAAGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAGACGCTCCTAAAAACAAGGACTTGGTTGACTGGCTGAAGCTG  989

seq1  CACCCCACCTACACTGTCGATATGCCGAGTTATGTACCAGTAAGTACCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCTACACTGTCGATATGCCGAGTTATGTACCAGTAAGTACCTC  1039

seq1  AGAGCCTGGGCTATGAAGCCTCACGGGGTCTGCCTAATTGCTTCTCATCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGGGCTATGAAGCCTCACGGGGTCTGCCTAATTGCTTCTCATCT  1089

seq1  GAGCGAGTCCTTGACAGCTCCCTGCACCCTCTGTCTTTGGCGTGAATGTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAGTCCTTGACAGCTCCCTGCACCCTCTGTCTTTGGCGTGAATGTG  1139

seq1  TGCAGGTTCACGTGTGCCCCATGTTTCTGCTGTGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTCACGTGTGCCCCATGTTTCTGCTGTGAATTC  1178


seq1: chr4_8662367_8663463
seq2: B6Ng01-102M09.g_66_1160

seq1  GAATTCCCTGTTTTCTTGCTGAGAACTGTCTCTAGCAGCTGCACAGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTTTTCTTGCTGAGAACTGTCTCTAGCAGCTGCACAGTCAG  50

seq1  GGATTCTGAGAAACAGAGTGCCCCAAGGAAGACCATCAAGACAACCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGAGAAACAGAGTGCCCCAAGGAAGACCATCAAGACAACCACAT  100

seq1  AGCGATTTAGTTCTATTTTATCTTTCTGAGTGTTCTTACGGGTAGGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATTTAGTTCTATTTTATCTTTCTGAGTGTTCTTACGGGTAGGTAGG  150

seq1  TGTCCAGATCGCCTCCACGGCATCCTCGGTGACATTTACCCTCTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGATCGCCTCCACGGCATCCTCGGTGACATTTACCCTCTTTGTTT  200

seq1  ATTCAAAAAGGAAATCATGGAGCTCACATGTCTGTAAGGTTATTTTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAAGGAAATCATGGAGCTCACATGTCTGTAAGGTTATTTTTAGC  250

seq1  CAGTTTAGAAGTGGGTCAAATGCGTTTAGAATGTGGCTCTTGTTGGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAGAAGTGGGTCAAATGCGTTTAGAATGTGGCTCTTGTTGGAACA  300

seq1  TTGCAAGGTATGGAGTAGGTGTGTTCTGGCTCCTGACTTCTCATCCGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGTATGGAGTAGGTGTGTTCTGGCTCCTGACTTCTCATCCGAAC  350

seq1  CAAGTGGCAGCACTTTGTGTTTCTGGTGATTGTGAAGAGAGAGGGCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGCAGCACTTTGTGTTTCTGGTGATTGTGAAGAGAGAGGGCCATG  400

seq1  GCTGGGAGCCCACAGGTGACTGTGGCCATACTTCCCTTTCTGTAGGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGCCCACAGGTGACTGTGGCCATACTTCCCTTTCTGTAGGTGCC  450

seq1  TGGGGCACAGGGTCCCTCAGCTGCCTCATCATGGGGTCCTAAGGAAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCACAGGGTCCCTCAGCTGCCTCATCATGGGGTCCTAAGGAAGTGC  500

seq1  ATCTGAGAAGTGAGTTTGCTTGACCCCTGCAGTACACACTATGTCTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAAGTGAGTTTGCTTGACCCCTGCAGTACACACTATGTCTAGTA  550

seq1  AAGTAGGTGCTGATGTACTTCTAGACAGGAAGGGCTAGTAACGTTAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGTGCTGATGTACTTCTAGACAGGAAGGGCTAGTAACGTTAGAAT  600

seq1  GACTACTAGTAACAGTAATTTTAACCTACAGAAGCTTCAGGGATGCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTAGTAACAGTAATTTTAACCTACAGAAGCTTCAGGGATGCTTCA  650

seq1  GAAGGTGGCTTAGCAGATAAAAAAAGAGTTCTTACTGCTTTTGCAGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGCTTAGCAGATAAAAAAAGAGTTCTTACTGCTTTTGCAGGGGA  700

seq1  ACTAAGCCCACGTGGCAGCTAATAGTTCCAAGGGCTTCAGCGCTCTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCCCACGTGGCAGCTAATAGTTCCAAGGGCTTCAGCGCTCTCTCT  750

seq1  GACTGCCATAGCCCCCCACCCCACCCCACACATAGTGTTTATAAATGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCATAGCCCCCCACCCCACCCCACACATAGTGTTTATAAATGTAC  800

seq1  ATACATTTTCATAATACACCCCCATACAACACATCACAGACATTCACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTTCATAATACACCCCCATACAACACATCACAGACATTCACATA  850

seq1  CACATCACACATATACCATACACACATTGCACACACACACATACATATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACACATATACCATACACACATTGCACACACACACATACATATCA  900

seq1  TACACACACATACCATATACACATTATACATACCTTACACACACAGTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACATACCATATACACATTATACATACCTTACACACACAGTATA  950

seq1  CATACATAAACATCATATATATATCATACACAAATCACACATCATACATA  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATACATAAACATCATATATATATCATACAC-AATCACACATCATACATA  999

seq1  TCACACACATCACACACACA-CCACACACATTATATATACATACATGCAT  1049
      ||||||||||||||||| || |||| | || ||||||||| |||||||||
seq2  TCACACACATCACACACCCACCCACCCCCA-TATATATAC-TACATGCAT  1047

seq1  ACATACACATGTCATACATACAAACA-CACATTCAAATCATACACATCA  1097
      |||||||||||||||||||||||||| ||||||| |||||||| |||||
seq2  ACATACACATGTCATACATACAAACACCACATTC-AATCATACCCATCA  1095


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