BAC Information

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BAC

Clone NameB6Ng01-103B16
Chromosome4 (Build37)
Map Location 119,251,331 - 119,370,266
singlet/doubletdoublet
Overlap geneFoxj3, Guca2a, Guca2b
Upstream geneEbna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398
Downstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103B16.bB6Ng01-103B16.g
ACCDH911799DH911800
length7761,065
definitionDH911799|Mus musculus domesticus DNA, BAC clone: B6Ng01-103B16, 5' end.DH911800|Mus musculus domesticus DNA, BAC clone: B6Ng01-103B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,251,331 - 119,252,105)(119,369,167 - 119,370,266)
sequence
gaattcctttagaaatagtgattaaatactcacctgaaagatacgtggct
aatatattaagacatagtgggtggattgggagtggaagcgagtgggaaag
aattttgttcctaaaactaaagattcccagaaaggttctgataccatttg
cctccagcagaacttcagtatctttagacctagaaacatttatacctgaa
catttctatggggaccaaagctgggtgtggtagaacatgcctttgattcc
agcactgggaggttggaggcaggtagatttctgtgactttgaggtcagtg
tggtcttggtctatgtagtgaatttgaattccagaacagctagagctgtg
cagtaagactgaaacaaaacaacaagagcagagagagacagagacagaga
caccagggctggagagatgctcagtggttaagagcactggctgttcttcc
agaaaccctgagttcagttcccagcaatcatatggtcacaaccatctgta
atgggatctgatgccctcttctggtgcatctgaagacagccacagtgtac
tcacatacatacatacatacatacatacatcttttttttttaatttcaat
tgaagattatattatacccaatgttcccaaaatttgaccagaaaaattgt
agaaattatcaataatttcagcaaagtgttatgatacataattgacttat
aaaatttaccaatcttcttttctttttctttttctttttctttttctttc
tttcttttttttggggggggaggggg
gaattctggttacctatggacagtaaaagcaaatcacacatgagtcacgc
cagctccctgagaaacacacgaatccctttagagtgatatcctgcaggcc
ggagagctacagcttgcttttgtcaaatgtttagggcgattaaaagaaag
agaacgaggaccaagaaaagaaagagtagggatggcaagcagcctgcaaa
acatggaacactgactctagtgccctttgcagacagctcaccagcctctg
tccacacacacgcctcggcacactgagcagcacatgttcgcaaacaggca
aactataaagaacaggtggactgggggagaggtcagcagacgctacagat
aacagaacaagacctggttatagctgggtcaccaggaactctacggtaac
tgtctgtgcttaatggttcttaaataaaagacaaggcttgcaaaatatat
gtgatggaaggagactgtagaataaatgagaagatataagaaataaccaa
acagacttcttgagagctaatataactgatgtttgcatcccagtaaatga
gctgaggcattaggatgcgaggcgatgaagagagaattggtgaaagagat
gttgagtccaaagagacgaaagagatggcaacaggaggagacgaggagtg
taaagaaaggtagctcaatgcatgccagtgtttcctatcgcaggataaag
aagtggggaaagttagatttaaaaaatattgtaagcggggcatggtggtg
cacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgag
ttccaggccagcctggtctacaaagtgagttccaggacagccaggactat
acagagaaaccctgtctcataataaataataataataataaataattaat
aaataaataaaatatagtaaggaaatagtaggtttctgagtagataaccc
tatatactgcatgttcagagtaaataaaataaaaataaatatcaccatca
gatgcataggactgacatgactctaatcttaccacttgacaaggggcttc
tgctacaccactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119251331_119252105
seq2: B6Ng01-103B16.b_47_822

seq1  GAATTCCTTTAGAAATAGTGATTAAATACTCACCTGAAAGATACGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAGAAATAGTGATTAAATACTCACCTGAAAGATACGTGGCT  50

seq1  AATATATTAAGACATAGTGGGTGGATTGGGAGTGGAAGCGAGTGGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAAGACATAGTGGGTGGATTGGGAGTGGAAGCGAGTGGGAAAG  100

seq1  AATTTTGTTCCTAAAACTAAAGATTCCCAGAAAGGTTCTGATACCATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTCCTAAAACTAAAGATTCCCAGAAAGGTTCTGATACCATTTG  150

seq1  CCTCCAGCAGAACTTCAGTATCTTTAGACCTAGAAACATTTATACCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCAGAACTTCAGTATCTTTAGACCTAGAAACATTTATACCTGAA  200

seq1  CATTTCTATGGGGACCAAAGCTGGGTGTGGTAGAACATGCCTTTGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATGGGGACCAAAGCTGGGTGTGGTAGAACATGCCTTTGATTCC  250

seq1  AGCACTGGGAGGTTGGAGGCAGGTAGATTTCTGTGACTTTGAGGTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGAGGTTGGAGGCAGGTAGATTTCTGTGACTTTGAGGTCAGTG  300

seq1  TGGTCTTGGTCTATGTAGTGAATTTGAATTCCAGAACAGCTAGAGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGGTCTATGTAGTGAATTTGAATTCCAGAACAGCTAGAGCTGTG  350

seq1  CAGTAAGACTGAAACAAAACAACAAGAGCAGAGAGAGACAGAGACAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGACTGAAACAAAACAACAAGAGCAGAGAGAGACAGAGACAGAGA  400

seq1  CACCAGGGCTGGAGAGATGCTCAGTGGTTAAGAGCACTGGCTGTTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGCTGGAGAGATGCTCAGTGGTTAAGAGCACTGGCTGTTCTTCC  450

seq1  AGAAACCCTGAGTTCAGTTCCCAGCAATCATATGGTCACAACCATCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGAGTTCAGTTCCCAGCAATCATATGGTCACAACCATCTGTA  500

seq1  ATGGGATCTGATGCCCTCTTCTGGTGCATCTGAAGACAGCCACAGTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATCTGATGCCCTCTTCTGGTGCATCTGAAGACAGCCACAGTGTAC  550

seq1  TCACATACATACATACATACATACATACATCTTTTTTTTTTAATTTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACATACATACATACATACATACATCTTTTTTTTTTAATTTCAAT  600

seq1  TGAAGATTATATTATACCCAATGTTCCCAAAATTTGACCAGAAAAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTATATTATACCCAATGTTCCCAAAATTTGACCAGAAAAATTGT  650

seq1  AGAAATTATCAATAATTTCAGCAAAGTGTTATGATACATAATTGACTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATCAATAATTTCAGCAAAGTGTTATGATACATAATTGACTTAT  700

seq1  AAAATTTACCAATCTTCTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTACCAATCTTCTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTC  750

seq1  TTTCTTTTTTTT-GGGGGGGAGGGGG  775
      |||||||||||| |||||||||||||
seq2  TTTCTTTTTTTTGGGGGGGGAGGGGG  776

seq1: chr4_119369167_119370266
seq2: B6Ng01-103B16.g_67_1131 (reverse)

seq1  GAAAGTGGTGTAGGCAGGAAGCCCCCTTTGTCAAGTGGTTAAGATTTTAG  50
      |||||||||||| ||| ||||||||  ||||||||||| |||||  ||||
seq2  GAAAGTGGTGTA-GCA-GAAGCCCC--TTGTCAAGTGG-TAAGA--TTAG  43

seq1  AGTCATTGTCAGTTTCCTTATGCATCTGATGTGTGATTATTTTTATTTTT  100
      ||||| |||||||   | ||||||||||||| ||||           | |
seq2  AGTCA-TGTCAGT---CCTATGCATCTGATG-GTGA-----------TAT  77

seq1  TTATTTTTATTT--TTTACTTCTTGAACATGCAGTATATAGGGTTTATCT  148
      ||||||||||||  ||||||   |||||||||||||||||||| ||||||
seq2  TTATTTTTATTTTATTTACT--CTGAACATGCAGTATATAGGG-TTATCT  124

seq1  ACTTCAGAAACCTACTATTTCTTTACTATATTTTTTATTTTATTTATTTA  198
      || |||||||||||||||||| ||||||       |||||||||||||||
seq2  AC-TCAGAAACCTACTATTTCCTTACTA-------TATTTTATTTATTTA  166

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTGAGACAGGGTTTCTCT  248
       ||| |||||||||  | |  |||||||||   |||||||||||||||||
seq2  -TTAATTATTTATTATTATTATTATTTATT--ATGAGACAGGGTTTCTCT  213

seq1  GTATAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTGG  263

seq1  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCG  313

seq1  TGCACCACCATGCCCCGCTTACAATATTTTTTAAATCTAACTTTCCCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACCATGCCCCGCTTACAATATTTTTTAAATCTAACTTTCCCCAC  363

seq1  TTCTTTATCCTGCGATAGGAAACACTGGCATGCATTGAGCTACCTTTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATCCTGCGATAGGAAACACTGGCATGCATTGAGCTACCTTTCTT  413

seq1  TACACTCCTCGTCTCCTCCTGTTGCCATCTCTTTCGTCTCTTTGGACTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCCTCGTCTCCTCCTGTTGCCATCTCTTTCGTCTCTTTGGACTCA  463

seq1  ACATCTCTTTCACCAATTCTCTCTTCATCGCCTCGCATCCTAATGCCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTTTCACCAATTCTCTCTTCATCGCCTCGCATCCTAATGCCTCA  513

seq1  GCTCATTTACTGGGATGCAAACATCAGTTATATTAGCTCTCAAGAAGTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTACTGGGATGCAAACATCAGTTATATTAGCTCTCAAGAAGTCT  563

seq1  GTTTGGTTATTTCTTATATCTTCTCATTTATTCTACAGTCTCCTTCCATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTATTTCTTATATCTTCTCATTTATTCTACAGTCTCCTTCCATC  613

seq1  ACATATATTTTGCAAGCCTTGTCTTTTATTTAAGAACCATTAAGCACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTTTGCAAGCCTTGTCTTTTATTTAAGAACCATTAAGCACAGA  663

seq1  CAGTTACCGTAGAGTTCCTGGTGACCCAGCTATAACCAGGTCTTGTTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCGTAGAGTTCCTGGTGACCCAGCTATAACCAGGTCTTGTTCTG  713

seq1  TTATCTGTAGCGTCTGCTGACCTCTCCCCCAGTCCACCTGTTCTTTATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTAGCGTCTGCTGACCTCTCCCCCAGTCCACCTGTTCTTTATAG  763

seq1  TTTGCCTGTTTGCGAACATGTGCTGCTCAGTGTGCCGAGGCGTGTGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGTTTGCGAACATGTGCTGCTCAGTGTGCCGAGGCGTGTGTGTG  813

seq1  GACAGAGGCTGGTGAGCTGTCTGCAAAGGGCACTAGAGTCAGTGTTCCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGCTGGTGAGCTGTCTGCAAAGGGCACTAGAGTCAGTGTTCCAT  863

seq1  GTTTTGCAGGCTGCTTGCCATCCCTACTCTTTCTTTTCTTGGTCCTCGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCAGGCTGCTTGCCATCCCTACTCTTTCTTTTCTTGGTCCTCGTT  913

seq1  CTCTTTCTTTTAATCGCCCTAAACATTTGACAAAAGCAAGCTGTAGCTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTTAATCGCCCTAAACATTTGACAAAAGCAAGCTGTAGCTCT  963

seq1  CCGGCCTGCAGGATATCACTCTAAAGGGATTCGTGTGTTTCTCAGGGAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCTGCAGGATATCACTCTAAAGGGATTCGTGTGTTTCTCAGGGAGC  1013

seq1  TGGCGTGACTCATGTGTGATTTGCTTTTACTGTCCATAGGTAACCAGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGACTCATGTGTGATTTGCTTTTACTGTCCATAGGTAACCAGAAT  1063

seq1  TC  1100
      ||
seq2  TC  1065