BAC Information

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BAC

Clone NameB6Ng01-103D11
Chromosome7 (Build37)4 (Build37)
Map Location 129,983,759 - 129,984,60310,909,053 - 10,909,177
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneScnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3
Downstream gene4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103D11.bB6Ng01-103D11.g
ACCDH911878DH911879
length846210
definitionDH911878|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D11, 5' end.DH911879|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,983,759 - 129,984,603)(10,909,053 - 10,909,177)
sequence
gaattccttacaagaatggaagcgtttggtagcctggggatgcagcatgc
agaagcttcccttatgtgttgattgtttcaagggactcagaggggactca
gcagatgccgaagagtctcagctttggtgtctccttgtctgcttaaagcc
cagctcagtgaggggagaaaaccattacctcagagcgtccattaagctca
tttcacaggaggaaaggcagaagtctgtcaacacacttggacagactttc
gtcacgcacaattgtcttttatttcagtcccattaaatactcctaagaga
ttcacttatcttccatgcttctgtgttcacactttgtcctggcatgtttt
tccaagttctctggatttccccaaacataattcagtctccctcaagtgaa
ttctactctcctcctctcagagagattgtttaagctctgactatctgacc
ttttctttgagactcaaaatttgtcgatttgcacactgtgattttccctg
tcccttcccctgactgcattaatcactgtatacctcttgcctcctattta
atgtctagttggttccttccagaaagttttctgaaggtgaaggacaaaag
cttttcctctgctcctactgggataagaaagaaattgagcattatgccga
gatttaagcttcaggacgaggatttaaggctctgaataaccttgaacacg
aagccacaggatgtcatcaaagacactgctgttgcctttccttgagactc
ccacttgtctgtcctgcaggagggcatggatggcatatgggggaactttc
tttttgtcttctctgaagtcccaaacagggggtggggggtggggga
cccagagcaaagagtctgatcctgatcgaactgggaaaagctctgggttt
cttaaaagacacctccctgaaagaaccaggtggcagcatcagctgagaac
accttaaatcccagcactcaggaaccagaggcaggtggacctctgagact
ttgaggccagcttggtctagagtgagttccaggacagctggagctacaca
gaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_129983759_129984603
seq2: B6Ng01-103D11.b_48_893 (reverse)

seq1  TCCCCCA-CCCCCACCCCCTGTTTGGGACTTCAGAGAAGACAAAAAGAAA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCCCCACCCCCTGTTTGGGACTTCAGAGAAGACAAAAAGAAA  50

seq1  GTTCCCCCATATGCCATCCATGCCCTCCTGCAGGACAGACAAGTGGGAGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCCATATGCCATCCATGCCCTCCTGCAGGACAGACAAGTGGGAGT  100

seq1  CTCAAGGAAAGGCAACAGCAGTGTCTTTGATGACATCCTGTGGCTTCGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGAAAGGCAACAGCAGTGTCTTTGATGACATCCTGTGGCTTCGTG  150

seq1  TTCAAGGTTATTCAGAGCCTTAAATCCTCGTCCTGAAGCTTAAATCTCGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTTATTCAGAGCCTTAAATCCTCGTCCTGAAGCTTAAATCTCGG  200

seq1  CATAATGCTCAATTTCTTTCTTATCCCAGTAGGAGCAGAGGAAAAGCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGCTCAATTTCTTTCTTATCCCAGTAGGAGCAGAGGAAAAGCTTT  250

seq1  TGTCCTTCACCTTCAGAAAACTTTCTGGAAGGAACCAACTAGACATTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCACCTTCAGAAAACTTTCTGGAAGGAACCAACTAGACATTAAA  300

seq1  TAGGAGGCAAGAGGTATACAGTGATTAATGCAGTCAGGGGAAGGGACAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGCAAGAGGTATACAGTGATTAATGCAGTCAGGGGAAGGGACAGG  350

seq1  GAAAATCACAGTGTGCAAATCGACAAATTTTGAGTCTCAAAGAAAAGGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCACAGTGTGCAAATCGACAAATTTTGAGTCTCAAAGAAAAGGTC  400

seq1  AGATAGTCAGAGCTTAAACAATCTCTCTGAGAGGAGGAGAGTAGAATTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTCAGAGCTTAAACAATCTCTCTGAGAGGAGGAGAGTAGAATTCA  450

seq1  CTTGAGGGAGACTGAATTATGTTTGGGGAAATCCAGAGAACTTGGAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGAGACTGAATTATGTTTGGGGAAATCCAGAGAACTTGGAAAAA  500

seq1  CATGCCAGGACAAAGTGTGAACACAGAAGCATGGAAGATAAGTGAATCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGGACAAAGTGTGAACACAGAAGCATGGAAGATAAGTGAATCTC  550

seq1  TTAGGAGTATTTAATGGGACTGAAATAAAAGACAATTGTGCGTGACGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTATTTAATGGGACTGAAATAAAAGACAATTGTGCGTGACGAAA  600

seq1  GTCTGTCCAAGTGTGTTGACAGACTTCTGCCTTTCCTCCTGTGAAATGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCCAAGTGTGTTGACAGACTTCTGCCTTTCCTCCTGTGAAATGAG  650

seq1  CTTAATGGACGCTCTGAGGTAATGGTTTTCTCCCCTCACTGAGCTGGGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGGACGCTCTGAGGTAATGGTTTTCTCCCCTCACTGAGCTGGGCT  700

seq1  TTAAGCAGACAAGGAGACACCAAAGCTGAGACTCTTCGGCATCTGCTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGACAAGGAGACACCAAAGCTGAGACTCTTCGGCATCTGCTGAG  750

seq1  TCCCCTCTGAGTCCCTTGAAACAATCAACACATAAGGGAAGCTTCTGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTGAGTCCCTTGAAACAATCAACACATAAGGGAAGCTTCTGCAT  800

seq1  GCTGCATCCCCAGGCTACCAAACGCTTCCATTCTTGTAAGGAATTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCCCCAGGCTACCAAACGCTTCCATTCTTGTAAGGAATTC  846

seq1: chr4_10909053_10909177
seq2: B6Ng01-103D11.g_171_282 (reverse)

seq1  TTTTTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTC  50
      ||||||||             ||||||||||||  |||||||||||||||
seq2  TTTTTTTT-------------TCTGTGTAGCTCCAGCTGTCCTGGAACTC  37

seq1  ACTCTATAGACCAGGCTGGCCTCGAA--CTCAGAAATCCGCCTGCCTCTG  98
      ||||  ||||||| ||||||||| ||  ||||||  ||| ||||||||||
seq2  ACTC--TAGACCAAGCTGGCCTCAAAGTCTCAGAGGTCCACCTGCCTCTG  85

seq1  CCTCCCAAGTGCTGGGATTAAAGGTGT  125
        |||  |||||||||||| |||||||
seq2  GTTCCTGAGTGCTGGGATTTAAGGTGT  112