BAC Information

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BAC

Clone NameB6Ng01-103E06
Chromosome4 (Build37)
Map Location 147,340,043 - 147,541,575
singlet/doubletdoublet
Overlap geneNppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2
Upstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik
Downstream genePtchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103E06.bB6Ng01-103E06.g
ACCDH911911DH911912
length2631,128
definitionDH911911|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E06, 5' end.DH911912|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,541,312 - 147,541,575)(147,340,043 - 147,341,193)
sequence
caaaggcaggcgatctgatgctcctttcttttatgggcaccagaacgggt
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacgtagtcccggaagacccaagacagagacttagaagcaattagaca
gaagggtcaaggaactaaggcaagtcccagctcaggcggctgtcccacct
caccagcaggtggcaccaaaccacagactaaaagatgaaggcagagctgg
gggtggggggggg
gaattccaggaacgtgttacagctgctgacagcacttcactctctgcctg
tgacctgtccatgtgacttcctccagaactatgtgaagaggagcgttgag
ggtgggcagcagcaccctgactaaatatccaaagactcctggactccagc
tgtactcctgagaagcaacaccatacggggctgggggtggacccacagtg
gtcacagctggctgtcagtaaccaagccccttaggcttccagggaccagt
aaagacgtccacttagcaatgccccacaggacctgaatatgtcccgagaa
gttcacgtttcacctcatttaaccatgactgggagctgggagtatagctc
agtgggtagagtgcttgcctgccatgcacaaagctgtgtgttccagcctc
agtacttcatcgtaagactggatatgatgacggagcatgcctgtaacccc
agatcttggaaggtctgaagttcaaggtcagcctcagctacaatatgaga
ttgaggccagcctgggctacatgaacttttgtctcggaaacagaacccaa
aatacccatagcttttatttccatcttaccaaatgggatgcttgcaacaa
gaagcccttgagggatcgacccaaaagcacacagctggtgggtggtaggg
gcaggacctgaatccaggcttatttagagtctgaatcctatctccaacca
cccacttgtcagcctctactggctgcagggccacacaagttctctttccc
ctgtcctttgacaggtgcttgcttcaccgggctggcttacagttgagctg
attggtgtgggtgcaggagggccaccccagcaagcacagcaaccttagca
ggaagccatagtctttgcctgaagggggctccttcacagccagaagtatg
agaggccccaggggagcctgagcttctgaaccaggcagcttcggtgtgcc
tgggctgccctgtagctctgctcagttgtatcatggtagagcgctgtgat
gaagtccaagggcctgctggagttgtttgctcattgagggagtactacta
ttcaaggctctggaatcggcctgactctgctcctcggtcacagctatttt
cattctacatcgatccctttaaactatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147541312_147541575
seq2: B6Ng01-103E06.b_51_313 (reverse)

seq1  CCCCCCCCCACCCCCAGCTCTGCCTTCATCTTTTAGTCTGTGGTTTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCACCCCCAGCTCTGCCTTCATCTTTTAGTCTGTGGTTTGGTG  50

seq1  CCACCTGCTGGTGAGGTGGGACAGCCGCCTGAGCTGGGACTTGCCTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCTGGTGAGGTGGGACAGCCGCCTGAGCTGGGACTTGCCTTAGT  100

seq1  TCCTTGACCCTTCTGTCTAATTGCTTCTAAGTCTCTGTCTTGGGTCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGACCCTTCTGTCTAATTGCTTCTAAGTCTCTGTCTTGGGTCTTCC  150

seq1  GGGACTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  200
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAC--GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  198

seq1  GTGTGTGTGTGTGTGACCCGTTCTGGTGCCCATAAAAGAAA-AAGCATCA  249
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  GTGTGTGTGTGTGTGACCCGTTCTGGTGCCCATAAAAGAAAGGAGCATCA  248

seq1  GATCGCCTGCCTTTG  264
      |||||||||||||||
seq2  GATCGCCTGCCTTTG  263

seq1: chr4_147340043_147341193
seq2: B6Ng01-103E06.g_67_1194

seq1  GAATTCCAGGAACGTGTTACAGCTGCTGACAGCACTTCACTCTCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAACGTGTTACAGCTGCTGACAGCACTTCACTCTCTGCCTG  50

seq1  TGACCTGTCCATGTGACTTCCTCCAGAACTATGTGAAGAGGAGCGTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTCCATGTGACTTCCTCCAGAACTATGTGAAGAGGAGCGTTGAG  100

seq1  GGTGGGCAGCAGCACCCTGACTAAATATCCAAAGACTCCTGGACTCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCAGCAGCACCCTGACTAAATATCCAAAGACTCCTGGACTCCAGC  150

seq1  TGTACTCCTGAGAAGCAACACCATACGGGGCTGGGGGTGGACCCACAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCTGAGAAGCAACACCATACGGGGCTGGGGGTGGACCCACAGTG  200

seq1  GTCACAGCTGGCTGTCAGTAACCAAGCCCCTTAGGCTTCCAGGGACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCTGGCTGTCAGTAACCAAGCCCCTTAGGCTTCCAGGGACCAGT  250

seq1  AAAGACGTCCACTTAGCAATGCCCCACAGGACCTGAATATGTCCCGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACGTCCACTTAGCAATGCCCCACAGGACCTGAATATGTCCCGAGAA  300

seq1  GTTCACGTTTCACCTCATTTAACCATGACTGGGAGCTGGGAGTATAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACGTTTCACCTCATTTAACCATGACTGGGAGCTGGGAGTATAGCTC  350

seq1  AGTGGGTAGAGTGCTTGCCTGCCATGCACAAAGCTGTGTGTTCCAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAGAGTGCTTGCCTGCCATGCACAAAGCTGTGTGTTCCAGCCTC  400

seq1  AGTACTTCATCGTAAGACTGGATATGATGACGGAGCATGCCTGTAACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCATCGTAAGACTGGATATGATGACGGAGCATGCCTGTAACCCC  450

seq1  AGATCTTGGAAGGTCTGAAGTTCAAGGTCAGCCTCAGCTACAATATGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGGAAGGTCTGAAGTTCAAGGTCAGCCTCAGCTACAATATGAGA  500

seq1  TTGAGGCCAGCCTGGGCTACATGAACTTTTGTCTCGGAAACAGAACCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGCCTGGGCTACATGAACTTTTGTCTCGGAAACAGAACCCAA  550

seq1  AATACCCATAGCTTTTATTTCCATCTTACCAAATGGGATGCTTGCAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCATAGCTTTTATTTCCATCTTACCAAATGGGATGCTTGCAACAA  600

seq1  GAAGCCCTTGAGGGATCGACCCAAAAGCACACAGCTGGTGGGTGGTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTTGAGGGATCGACCCAAAAGCACACAGCTGGTGGGTGGTAGGG  650

seq1  GCAGGACCTGAATCCAGGCTTATTTAGAGTCTGAATCCTATCTCCAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCTGAATCCAGGCTTATTTAGAGTCTGAATCCTATCTCCAACCA  700

seq1  CCCACTTGTCAGCCTCTACTGGCTGCAGGGCCACACAAGTTCTCTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGTCAGCCTCTACTGGCTGCAGGGCCACACAAGTTCTCTTTCCC  750

seq1  CTGTCC-TTGACAGGTGCTTGCTTCACCGGGCTGGCTTACAGTTGAGCTG  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTGACAGGTGCTTGCTTCACCGGGCTGGCTTACAGTTGAGCTG  800

seq1  ATTGGTGTGGGTGCAGGAGGGCCACCCCAGCAAGCACAGCAACCTTAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTGGGTGCAGGAGGGCCACCCCAGCAAGCACAGCAACCTTAGCA  850

seq1  GGAAGCCATAG-CCTTGCCTGAAGGGGGCTCCTTCACAGGCAAGAAAGTA  898
      ||||||||||| | ||||||||||||||||||||||||| ||   |||||
seq2  GGAAGCCATAGTCTTTGCCTGAAGGGGGCTCCTTCACAGCCA--GAAGTA  898

seq1  TGAGAGGCCCCAGGGGAGCCTGAGCTCCTGAACCAGGCAGCTCCGGTTGT  948
      |||||||||||||||||||||||||| ||||||||||||||| ||| |||
seq2  TGAGAGGCCCCAGGGGAGCCTGAGCTTCTGAACCAGGCAGCTTCGG-TGT  947

seq1  GCCCTGGGCTGCCCTGTTAGCTCTGCTCAGTTGTATCATTGGTAGGAGCG  998
      | |||||||||||||| ||||||||||||||||||||| ||||| |||||
seq2  G-CCTGGGCTGCCCTG-TAGCTCTGCTCAGTTGTATCA-TGGTA-GAGCG  993

seq1  CTGTGATGAAGTCCCAGGGCCTGGCTGGAGTCTGTTTGCCCCATTGAGGG  1048
      |||||||||||||| ||||||| |||||||| |||||| | |||||||||
seq2  CTGTGATGAAGTCCAAGGGCCT-GCTGGAGT-TGTTTG-CTCATTGAGGG  1040

seq1  AGTACTTACTATTTCAAATGCTCTGATATCGGCCTGACCTCTGCTCTCAC  1098
      ||||| |||||||   || ||||||  |||||||||| |||||||| | |
seq2  AGTAC-TACTATT--CAAGGCTCTGGAATCGGCCTGA-CTCTGCTC-CTC  1085

seq1  GGTCACAGGCTTATTTTCATTTCTTTACATCTAAATTTCCCTTTTAAACT  1148
      ||||||||   |||||||||   | |||||| |    |||| ||||||||
seq2  GGTCACAG--CTATTTTCAT---TCTACATCGA----TCCC-TTTAAACT  1125

seq1  ATT  1151
      |||
seq2  ATT  1128