BAC Information

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BAC

Clone NameB6Ng01-103M15
Chromosome4 (Build37)
Map Location 134,768,768 - 134,894,735
singlet/doubletdoublet
Overlap geneClic4, LOC676072, Srrm1
Upstream geneCatsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
Downstream geneA330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103M15.bB6Ng01-103M15.g
ACCDH912272DH912273
length1,2641,113
definitionDH912272|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M15, 5' end.DH912273|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,768,768 - 134,770,029)(134,893,593 - 134,894,735)
sequence
gaattctgcttttatgaacatggtacatctatccatgccggcagatttct
attcagcttttcaatccttggtagttcccaccacaaaagaatcatatatg
ctttgctggacttgactttacatagctaacaacttaggactggttttata
tcttaaaacattctcttgaaacaggtacttatagagcccatttttcctgc
ttattttccctccatcagccaggtttcctcctgaggaaagcgatgttagc
agtttaacttctcctctgctttgtatgaatatatggcatttatactgact
tttgaaatctttcaattctttttatgtatctggctgttttgtctgtatat
ctgtgcatcacatgcatgcttggtgcccaaggaggccgaaagagggtgac
agatcccataggactggagtcatggagatgaaccacttctgtgggtgcag
ggagtagacctctggaccagtgctcttaactgctgagccatctctgcagg
ccctgacttttggtatctaatgctgtatatgtagaaattcagctgaattg
ttaagaatttgcacattattttggattgcacatatatgtctgcaaacacc
acccatttctcacttctgcccattcctacgccttccagcctccccatgct
gctgggatgactgtaacagcagctgtgacaagcagaccatgtcagctgtg
agaggacaactccttattgtccaaggttcccacagaatggtctcgtcttg
cattttctggatgttactggtagcgagcaagctgggcagttaaaactgta
tagcgctcctgtccaggaccacaccaggcagcctgccagtccagctccag
gaagctaatgtctgcttctgctctctgcagacacccacatgcatgagcac
acgtgtgtgcacacacataaagatgactactttaaaatctgtctattttg
ctataagtatggcttccactaaattattccctgtaccaactatgacttag
taaacattcatcttccttctcgtaaatgtactgaaccgaaatcagaaaag
tggtcctcagaacagctttataccaagtatgtccatgaaggaaaaaaaaa
aaaaaaagaattcctttgatatgtgaaaataatctaatcttaaaacaaat
agcctgcccagccatacacctggtgggtgatagtccgagaaaagaagcca
agccatttgtaatgagccttctgtacgaatctccaagacgtgttctgcgc
attatggctctggg
gaattccaggcatcacacttttcagattgatccttctgcttcgggaagaa
gtgatgcccgtgctcccttagggagagagagagagaccgatttcttctat
tggactttggcaaacagcatgtctcagtagtacgcacgtagcaatgtagc
aggcacggtattttgcagattgtgtaagattccctttcagccagttttta
atctcacacttaaggtagggtttctttttttcaggttctcaggaattctt
ctgccaaaggtgaattctgcaggtacacgtaattgcaacagaacttaacc
acagattttgctgcagaattcgagaggcccctacttctaagtttatgtag
ctaaatgaatttcaaatcttgcacatattttttagtgaaacttaaaagct
gcttgacgtcactctaaatgagcagtactctctcaccctcactgttgtgc
aaactccatgaccccagtattactcttcaggaagaagatgcttggctact
ggattatagcagtcacagcgcaaacacaatcaggagttatgtggatttac
tctcagaaatagctgtttcctgtcctaggttatggttttgtttccaatct
ttttgaagtaatttatgtacttagctacataaactcaaaagttggactaa
aagaaatagctgtgtttctgtgcatattgtacatactgtgatgtcactct
tgagagggatgcggatggtgaagtgagtgctttattccacagaaggaggc
gttcttccgcatccctgtctggaagtagctcgtcgtcctcttcatctcgt
tcccggtcaccaccaaagaaacctcccaagaggacatccagccctcctcg
gaaacgcgtaggtaatcaccttcagcagtcctccacggcgaagacaccgg
ccgtcatctccagcactccgccactcaaaactcgcattcccactccagca
gtcaaaccgtacaagaaaagtcgtgtttctgtgtctcaggagatcttcgg
taatgtacaaacaaagcgcttgttcctttggcatctggtgaccagtcgtc
ttcccctcctcagagcagctggcggtacttttctatggcacgagtgctgt
ccttgctctgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134768768_134770029
seq2: B6Ng01-103M15.b_49_1312

seq1  GAATTCTGCTTTTATGAACATGGTACATCTATCCATGCCGGCAGATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTTTATGAACATGGTACATCTATCCATGCCGGCAGATTTCT  50

seq1  ATTCAGCTTTTCAATCCTTGGTAGTTCCCACCACAAAAGAATCATATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTTTTCAATCCTTGGTAGTTCCCACCACAAAAGAATCATATATG  100

seq1  CTTTGCTGGACTTGACTTTACATAGCTAACAACTTAGGACTGGTTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGGACTTGACTTTACATAGCTAACAACTTAGGACTGGTTTTATA  150

seq1  TCTTAAAACATTCTCTTGAAACAGGTACTTATAGAGCCCATTTTTCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAACATTCTCTTGAAACAGGTACTTATAGAGCCCATTTTTCCTGC  200

seq1  TTATTTTCCCTCCATCAGCCAGGTTTCCTCCTGAGGAAAGCGATGTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCCTCCATCAGCCAGGTTTCCTCCTGAGGAAAGCGATGTTAGC  250

seq1  AGTTTAACTTCTCCTCTGCTTTGTATGAATATATGGCATTTATACTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACTTCTCCTCTGCTTTGTATGAATATATGGCATTTATACTGACT  300

seq1  TTTGAAATCTTTCAATTCTTTTTATGTATCTGGCTGTTTTGTCTGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATCTTTCAATTCTTTTTATGTATCTGGCTGTTTTGTCTGTATAT  350

seq1  CTGTGCATCACATGCATGCTTGGTGCCCAAGGAGGCCGAAAGAGGGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATCACATGCATGCTTGGTGCCCAAGGAGGCCGAAAGAGGGTGAC  400

seq1  AGATCCCATAGGACTGGAGTCATGGAGATGAACCACTTCTGTGGGTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCATAGGACTGGAGTCATGGAGATGAACCACTTCTGTGGGTGCAG  450

seq1  GGAGTAGACCTCTGGACCAGTGCTCTTAACTGCTGAGCCATCTCTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGACCTCTGGACCAGTGCTCTTAACTGCTGAGCCATCTCTGCAGG  500

seq1  CCCTGACTTTTGGTATCTAATGCTGTATATGTAGAAATTCAGCTGAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTTTTGGTATCTAATGCTGTATATGTAGAAATTCAGCTGAATTG  550

seq1  TTAAGAATTTGCACATTATTTTGGATTGCACATATATGTCTGCAAACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATTTGCACATTATTTTGGATTGCACATATATGTCTGCAAACACC  600

seq1  ACCCATTTCTCACTTCTGCCCATTCCTACGCCTTCCAGCCTCCCCATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTCTCACTTCTGCCCATTCCTACGCCTTCCAGCCTCCCCATGCT  650

seq1  GCTGGGATGACTGTAACAGCAGCTGTGACAAGCAGACCATGTCAGCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATGACTGTAACAGCAGCTGTGACAAGCAGACCATGTCAGCTGTG  700

seq1  AGAGGACAACTCCTTATTGTCCAAGGTTCCCACAGAATGGTCTCGTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAACTCCTTATTGTCCAAGGTTCCCACAGAATGGTCTCGTCTTG  750

seq1  CATTTTCTGGATGTTACTGGTAGCGAGCAAGCTGGGCAGTTAAAACTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGGATGTTACTGGTAGCGAGCAAGCTGGGCAGTTAAAACTGTA  800

seq1  TAGCGCTCCTGTCCAGGACCACACCAGGCAGCCTGCCAGTCCAGCTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCTCCTGTCCAGGACCACACCAGGCAGCCTGCCAGTCCAGCTCCAG  850

seq1  GAAGCTAATGTCTGCTTCTGCTCTCTGCAGACACCCACATGCATGAGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAATGTCTGCTTCTGCTCTCTGCAGACACCCACATGCATGAGCAC  900

seq1  ACGTGTGTGCACACACATAAAGATGACTACTTTAAAATCTGTTCTATTTT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACGTGTGTGCACACACATAAAGATGACTACTTTAAAATCTG-TCTATTTT  949

seq1  GCTATAAGTATTGGCTTCCACTAAATTATTCCCTGTACCAACTATGACTT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAGTA-TGGCTTCCACTAAATTATTCCCTGTACCAACTATGACTT  998

seq1  AGTAAACATTCCATCTTCCTTCCTCGTAAATGTACTGAACCG-AATCAGA  1049
      |||||||||| |||||||||| |||||||||||||||||||| |||||||
seq2  AGTAAACATT-CATCTTCCTT-CTCGTAAATGTACTGAACCGAAATCAGA  1046

seq1  AAAGTGGT-CTCAGAACAGCTTTATACCAAGTTATGTCCATGAAGGAGAA  1098
      |||||||| |||||||||||||||||||||| ||||||||||||||| ||
seq2  AAAGTGGTCCTCAGAACAGCTTTATACCAAG-TATGTCCATGAAGGAAAA  1095

seq1  AAAAAAAAAAAAGAA-TCCTTTGATA-GTGAAAATATATTTATTTTTTTA  1146
      ||||||||||||||| |||||||||| ||||||||| || || | ||  |
seq2  AAAAAAAAAAAAGAATTCCTTTGATATGTGAAAATA-ATCTAATCTTAAA  1144

seq1  ATACAATAG-CTG-CCAGCAATACA-CTGGT-GTTGATGTTCCAGAGAAA  1192
      | | ||||| ||| ||||| ||||| ||||| | ||||  ||| ||||||
seq2  ACA-AATAGCCTGCCCAGCCATACACCTGGTGGGTGATAGTCC-GAGAAA  1192

seq1  AGAAAACGCAAGCATTTTGTAATGAGCTTTCTGTACGATACTCCAA-AGC  1241
      ||  ||  |||||  |||||||||||| ||||||||||  |||||| |  
seq2  AG--AAGCCAAGCCATTTGTAATGAGCCTTCTGTACGAATCTCCAAGACG  1240

seq1  TGTTC--GGCATTATGGCT-TGGG  1262
      |||||   ||||||||||| ||||
seq2  TGTTCTGCGCATTATGGCTCTGGG  1264

seq1: chr4_134893593_134894735
seq2: B6Ng01-103M15.g_68_1180 (reverse)

seq1  GAACAGAAGGCAGGACAAGCCAACTCTGTGCCATATAGAAAGTACCGCCC  50
      |||||| ||  ||||| |||  |||| |||||||| | ||||||||| ||
seq2  GAACAG-AGCAAGGAC-AGC--ACTC-GTGCCATAGA-AAAGTACCG-CC  43

seq1  AGCTGCTTCTGAAGGAGGGGAGGGACGACTGGGTTCACCCAGATGCCAAA  100
      |||||| |||| |||||||||  |||||||||  ||| ||||||||||||
seq2  AGCTGC-TCTG-AGGAGGGGA-AGACGACTGG--TCA-CCAGATGCCAAA  87

seq1  GGGAACAAAGCGCCTTTTGTTTGTACCTTTACCGGAGGTTCTTCCTGGAG  150
       ||||| ||||||  |||||||||| | |||||| || |   |||| |||
seq2  -GGAAC-AAGCGC--TTTGTTTGTA-CATTACCGAAGAT--CTCCT-GAG  129

seq1  ACACAGAAACACGACTTTTTCTTGTACGGTTTGACTGCTGGGGAGTTGGG  200
      ||||||||||||||| |||||||||||||||||||||||  |||||  ||
seq2  ACACAGAAACACGAC-TTTTCTTGTACGGTTTGACTGCT--GGAGT--GG  174

seq1  GAATGGCGAGTTTTGGGTGGCGGAGTTGCTGGAGATGACGGCCGGTGTCT  250
      |||| |||||||||| ||||||||| ||||||||||||||||||||||||
seq2  GAAT-GCGAGTTTTGAGTGGCGGAG-TGCTGGAGATGACGGCCGGTGTCT  222

seq1  TCGCCGTGGAGGACTTGCTGAAGGTGATAACCTACGCGTTTTCCGAGGAG  300
      |||||||||||||| ||||||||||||| ||||||||| |||||||||||
seq2  TCGCCGTGGAGGAC-TGCTGAAGGTGATTACCTACGCG-TTTCCGAGGAG  270

seq1  GGCTGGATGTCCTCTTGGGAGGTTTCTTTGGTGGTGACCGGGAACGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATGTCCTCTTGGGAGGTTTCTTTGGTGGTGACCGGGAACGAGAT  320

seq1  GAAGAGGACGACGAGCTACTTCCAGACAGGGATGCGGAAGAACGCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGACGACGAGCTACTTCCAGACAGGGATGCGGAAGAACGCCTCCT  370

seq1  TCTGTGGAATAAAGCACTCACTTCACCATCCGCATCCCTCTCAAGAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAATAAAGCACTCACTTCACCATCCGCATCCCTCTCAAGAGTGA  420

seq1  CATCACAGTATGTACAATATGCACAGAAACACAGCTATTTCTTTTAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGTATGTACAATATGCACAGAAACACAGCTATTTCTTTTAGTCC  470

seq1  AACTTTTGAGTTTATGTAGCTAAGTACATAAATTACTTCAAAAAGATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGAGTTTATGTAGCTAAGTACATAAATTACTTCAAAAAGATTGG  520

seq1  AAACAAAACCATAACCTAGGACAGGAAACAGCTATTTCTGAGAGTAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACCATAACCTAGGACAGGAAACAGCTATTTCTGAGAGTAAATC  570

seq1  CACATAACTCCTGATTGTGTTTGCGCTGTGACTGCTATAATCCAGTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAACTCCTGATTGTGTTTGCGCTGTGACTGCTATAATCCAGTAGCC  620

seq1  AAGCATCTTCTTCCTGAAGAGTAATACTGGGGTCATGGAGTTTGCACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTCTTCCTGAAGAGTAATACTGGGGTCATGGAGTTTGCACAAC  670

seq1  AGTGAGGGTGAGAGAGTACTGCTCATTTAGAGTGACGTCAAGCAGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGTGAGAGAGTACTGCTCATTTAGAGTGACGTCAAGCAGCTTTT  720

seq1  AAGTTTCACTAAAAAATATGTGCAAGATTTGAAATTCATTTAGCTACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCACTAAAAAATATGTGCAAGATTTGAAATTCATTTAGCTACATA  770

seq1  AACTTAGAAGTAGGGGCCTCTCGAATTCTGCAGCAAAATCTGTGGTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGAAGTAGGGGCCTCTCGAATTCTGCAGCAAAATCTGTGGTTAAG  820

seq1  TTCTGTTGCAATTACGTGTACCTGCAGAATTCACCTTTGGCAGAAGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGCAATTACGTGTACCTGCAGAATTCACCTTTGGCAGAAGAATT  870

seq1  CCTGAGAACCTGAAAAAAAGAAACCCTACCTTAAGTGTGAGATTAAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACCTGAAAAAAAGAAACCCTACCTTAAGTGTGAGATTAAAAAC  920

seq1  TGGCTGAAAGGGAATCTTACACAATCTGCAAAATACCGTGCCTGCTACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAAAGGGAATCTTACACAATCTGCAAAATACCGTGCCTGCTACAT  970

seq1  TGCTACGTGCGTACTACTGAGACATGCTGTTTGCCAAAGTCCAATAGAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACGTGCGTACTACTGAGACATGCTGTTTGCCAAAGTCCAATAGAAG  1020

seq1  AAATCGGTCTCTCTCTCTCTCCCTAAGGGAGCACGGGCATCACTTCTTCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGGTCTCTCTCTCTCTCCCTAAGGGAGCACGGGCATCACTTCTTCC  1070

seq1  CGAAGCAGAAGGATCAATCTGAAAAGTGTGATGCCTGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCAGAAGGATCAATCTGAAAAGTGTGATGCCTGGAATTC  1113