BAC Information

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BAC

Clone NameB6Ng01-103P04
Chromosome4 (Build37)
Map Location 108,303,985 - 108,510,719
singlet/doubletdoublet
Overlap geneCc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12
Upstream geneGlis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l
Downstream geneKti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103P04.bB6Ng01-103P04.g
ACCDH912386DH912387
length1,187900
definitionDH912386|Mus musculus domesticus DNA, BAC clone: B6Ng01-103P04, 5' end.DH912387|Mus musculus domesticus DNA, BAC clone: B6Ng01-103P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,303,985 - 108,305,193)(108,509,821 - 108,510,719)
sequence
gaattcacactccagattcccagtccattccagtattccctgtgtttcag
ggcaccaaactgtttacaaggctagaacctacaggctctgcctttctttg
gtggatgacagtctgaattgaaggcagtgagatccagagaggaagcctac
cctgggcttccatttccacttgcccaagaattctaaccctgtccttgcct
gctctcctccttgcagaatttgaacaagttttcaagctaaacatcaatcg
aaaccaccgaggctttaggagagtgatccagagcaaaggaatcaaatttg
agatcttccacaaagggtaagggttccctcccactggcagatctgtgcct
gttctctgtgccactgtttgcactaagcttgcactaaactcagtcagttt
actcctgcccctgccccctctgcgcagtctaatcctctgcttcttgcctt
cccagatccttttttagaagtgacaagctggttggcacagcacacttgaa
attggaaaggctggagaaggagtgtgagatcagagagatcatggaggtag
ggcccaagatgaactcatgttcttgttactgttgaggggtctatgacatc
gtaagttgttagtgtgctttgaggatgggtggcagtcccatgtcatagac
ggaagaaggaaagaaagtgaggaactttcagagtgagccaggtgggaagt
aggagatgaagttgagagaagacccttgaggattctgaccaacgctaaac
atgatttctgttccagggttgtgttgagcttgggtcagtggacagagaac
aagctcccaacaggaaatcgagataatatttctagatcagtgacatatgc
aaattgtttccatggcctcatagggttatataagatgaggggttttaaga
actttcttctggttccaggacagccagtgctacacagaaaaactttctga
aaaacaaaaacaaacaaaaaaaaaaaagaataaatatgaaagataggaaa
agaccttctcttggggctggagagaatgctcagtgttaaggcactgactg
ccctgcagaagttctggagttcaatccagcagcaacatgggtgctctcaa
gcaatcgtaatggaactgaatgccctcttctgggtgtcttcgagagcgcc
taagggaactcattaagaataatgccttaaataaaga
gaattccagagactgaagtcatctatttctattacaggcgggagaacaca
tgaatggcctctttctagattctgcattggaggccagagtggtgcactgg
gtaaagacatgggctggggattcatcttcctgccctcgacttactagtta
acttctaatgtttcattttaaattcttcatctgtgaaatgggatgataat
aaaaatattacccacctcatagttactatgtatgaaaaaaatacgcaggc
agatcaatgcctggaagctagcagagaggaagtaaatgctagcaaccaca
cttctttccaggtgatagagctaagtttctagtctactgagaataatgag
cgtgtttttggacactggaatgttagagctgcgaggcccttaggacacat
tcctagttcactctcacttaataaatggtcactagggaagaccactgctg
gctaaatggcctgtccaagattaaaatctaggcctaataattccagtcta
gtgcacactattccacaccagcgtgcttcctcttcataatgaaaactgtt
ggggagggtagggagggttactcattgtttcctctctgcaaaccaccaag
gaatcttctagaaagagctggagaagctctttagacattttggaagaaac
aacactcatcaaaattttcaggacttcctgcctcaggtagtactttttac
tttttttaggtggggtgagtatatttcttatgtccaaagaatctatacat
aaacaatacacaagacaaatacttgagataatattaattcctttttagaa
acaagcaagtattcctcaatggtggaaataataacaatatttcacttact
cgatctttttcaagtgtgtgacacttcacgcgtcttttgctttttcattc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_108303985_108305193
seq2: B6Ng01-103P04.b_47_1233

seq1  GAATTCACACTCCAGATTCCCAGTCCATTCCAGTATTCCCTGTGTTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCCAGATTCCCAGTCCATTCCAGTATTCCCTGTGTTTCAG  50

seq1  GGCACCAAACTGTTTACAAGGCTAGAACCTACAGGCTCTGCCTTTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAAACTGTTTACAAGGCTAGAACCTACAGGCTCTGCCTTTCTTTG  100

seq1  GTGGATGACAGTCTGAATTGAAGGCAGTGAGATCCAGAGAGGAAGCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGACAGTCTGAATTGAAGGCAGTGAGATCCAGAGAGGAAGCCTAC  150

seq1  CCTGGGCTTCCATTTCCACTTGCCCAAGAATTCTAACCCTGTCCTTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTTCCATTTCCACTTGCCCAAGAATTCTAACCCTGTCCTTGCCT  200

seq1  GCTCTCCTCCTTGCAGAATTTGAACAAGTTTTCAAGCTAAACATCAATCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTCCTTGCAGAATTTGAACAAGTTTTCAAGCTAAACATCAATCG  250

seq1  AAACCACCGAGGCTTTAGGAGAGTGATCCAGAGCAAAGGAATCAAATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACCGAGGCTTTAGGAGAGTGATCCAGAGCAAAGGAATCAAATTTG  300

seq1  AGATCTTCCACAAAGGGTAAGGGTTCCCTCCCACTGGCAGATCTGTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTCCACAAAGGGTAAGGGTTCCCTCCCACTGGCAGATCTGTGCCT  350

seq1  GTTCTCTGTGCCACTGTTTGCACTAAGCTTGCACTAAACTCAGTCAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGTGCCACTGTTTGCACTAAGCTTGCACTAAACTCAGTCAGTTT  400

seq1  ACTCCTGCCCCTGCCCCCTCTGCGCAGTCTAATCCTCTGCTTCTTGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCCCCTGCCCCCTCTGCGCAGTCTAATCCTCTGCTTCTTGCCTT  450

seq1  CCCAGATCCTTTTTTAGAAGTGACAAGCTGGTTGGCACAGCACACTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATCCTTTTTTAGAAGTGACAAGCTGGTTGGCACAGCACACTTGAA  500

seq1  ATTGGAAAGGCTGGAGAAGGAGTGTGAGATCAGAGAGATCATGGAGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAGGCTGGAGAAGGAGTGTGAGATCAGAGAGATCATGGAGGTAG  550

seq1  GGCCCAAGATGAACTCATGTTCTTGTTACTGTTGAGGGGTCTATGACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGATGAACTCATGTTCTTGTTACTGTTGAGGGGTCTATGACATC  600

seq1  GTAAGTTGTTAGTGTGCTTTGAGGATGGGTGGCAGTCCCATGTCATAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGTTAGTGTGCTTTGAGGATGGGTGGCAGTCCCATGTCATAGAC  650

seq1  GGAAGAAGGAAAGAAAGTGAGGAACTTTCAGAGTGAGCCAGGTGGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGGAAAGAAAGTGAGGAACTTTCAGAGTGAGCCAGGTGGGAAGT  700

seq1  AGGAGATGAAGTTGAGAGAAGACCCTTGAGGATTCTGACCAACGCTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGAAGTTGAGAGAAGACCCTTGAGGATTCTGACCAACGCTAAAC  750

seq1  ATGATTTCTGTTCCAGGGTTGTGTTGAGCTTGGGTCAGTGGACAGAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCTGTTCCAGGGTTGTGTTGAGCTTGGGTCAGTGGACAGAGAAC  800

seq1  AAGCTCCCAACAGGAAATCGAGATAATATTTCTAGATCAGTGACATATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCCAACAGGAAATCGAGATAATATTTCTAGATCAGTGACATATGC  850

seq1  AAATTGTTTCCATGGCCTCATAGGGTTATATAAGATGAGGGGTTTTAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTTCCATGGCCTCATAGGGTTATATAAGATGAGGGGTTTTAAGA  900

seq1  ACTTTCTTCTGGTTCCAGGACAGCCAGTGCTACACAGAAAAACTGTCTGA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTTTCTTCTGGTTCCAGGACAGCCAGTGCTACACAGAAAAACTTTCTGA  950

seq1  AAAAACAAAAAACAAAACAAAAAAAAAAAAAAGAAAGAAAAAAGAAAAGA  1000
      ||||   |||||||||  ||||||||||| || ||| |  ||||| | ||
seq2  AAAA--CAAAAACAAACAAAAAAAAAAAAGAATAAATATGAAAGATAGGA  998

seq1  AAAAGAAAAAAGAACCTTCTCTTGGGGCTGGAGAGAATGCTCAGTGGTTA  1050
      |||          |||||||||||||||||||||||||||||||| ||||
seq2  AAA---------GACCTTCTCTTGGGGCTGGAGAGAATGCTCAGT-GTTA  1038

seq1  AGGGCACTGACTGCCCTGCCAGAGGTCCT-GAGTTCAATCCCCAGCAAGC  1099
      | |||||||||||||||| |||| || || |||||||||  ||||||   
seq2  A-GGCACTGACTGCCCTG-CAGAAGTTCTGGAGTTCAAT--CCAGCAGCA  1084

seq1  ACATGGTGGCTCAC-AGCCATCTGTAATGGGACCTGATGCCCTCTTCT-G  1147
      ||||||  |||| | ||| ||| ||||||| ||   |||||||||||| |
seq2  ACATGGGTGCTCTCAAGCAATC-GTAATGGAACTGAATGCCCTCTTCTGG  1133

seq1  GTGTCTCTGAGGACAGCTACAGTGAACTCATATAAAGAAAATAAATGCAT  1197
      ||||||  |||  |  ||| || ||||||  || |||||    |||||  
seq2  GTGTCTTCGAGAGCGCCTA-AGGGAACTC--ATTAAGAA---TAATGC--  1175

seq1  CTTAAATAAAGA  1209
      ||||||||||||
seq2  CTTAAATAAAGA  1187

seq1: chr4_108509821_108510719
seq2: B6Ng01-103P04.g_66_965 (reverse)

seq1  GAATGAAAAAGCAAAAGACGCGTGAAGTGTCACACACTTGAAAAAGATCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAAAGCAAAAGACGCGTGAAGTGTCACACACTTGAAAAAGATCG  50

seq1  AGTAAGTGAAATATTGTTATTATTTCCACCATTGAGGAATACTTGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGAAATATTGTTATTATTTCCACCATTGAGGAATACTTGCTTGT  100

seq1  TTCT-AAAAGGAATTAATATTATCTCAAGTATTTGTCTTGTGTATTGTTT  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAAGGAATTAATATTATCTCAAGTATTTGTCTTGTGTATTGTTT  150

seq1  ATGTATAGATTCTTTGGACATAAGAAATATACTCACCCCACCTAAAAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGATTCTTTGGACATAAGAAATATACTCACCCCACCTAAAAAAA  200

seq1  GTAAAAAGTACTACCTGAGGCAGGAAGTCCTGAAAATTTTGATGAGTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGTACTACCTGAGGCAGGAAGTCCTGAAAATTTTGATGAGTGTT  250

seq1  GTTTCTTCCAAAATGTCTAAAGAGCTTCTCCAGCTCTTTCTAGAAGATTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCCAAAATGTCTAAAGAGCTTCTCCAGCTCTTTCTAGAAGATTC  300

seq1  CTTGGTGGTTTGCAGAGAGGAAACAATGAGTAACCCTCCCTACCCTCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGTTTGCAGAGAGGAAACAATGAGTAACCCTCCCTACCCTCCCC  350

seq1  AACAGTTTTCATTATGAAGAGGAAGCACGCTGGTGTGGAATAGTGTGCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTTCATTATGAAGAGGAAGCACGCTGGTGTGGAATAGTGTGCAC  400

seq1  TAGACTGGAATTATTAGGCCTAGATTTTAATCTTGGACAGGCCATTTAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGGAATTATTAGGCCTAGATTTTAATCTTGGACAGGCCATTTAGC  450

seq1  CAGCAGTGGTCTTCCCTAGTGACCATTTATTAAGTGAGAGTGAACTAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGGTCTTCCCTAGTGACCATTTATTAAGTGAGAGTGAACTAGGA  500

seq1  ATGTGTCCTAAGGGCCTCGCAGCTCTAACATTCCAGTGTCCAAAAACACG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCTAAGGGCCTCGCAGCTCTAACATTCCAGTGTCCAAAAACACG  550

seq1  CTCATTATTCTCAGTAGACTAGAAACTTAGCTCTATCACCTGGAAAGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATTCTCAGTAGACTAGAAACTTAGCTCTATCACCTGGAAAGAAG  600

seq1  TGTGGTTGCTAGCATTTACTTCCTCTCTGCTAGCTTCCAGGCATTGATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCTAGCATTTACTTCCTCTCTGCTAGCTTCCAGGCATTGATCT  650

seq1  GCCTGCGTATTTTTTTCATACATAGTAACTATGAGGTGGGTAATATTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGTATTTTTTTCATACATAGTAACTATGAGGTGGGTAATATTTTT  700

seq1  ATTATCATCCCATTTCACAGATGAAGAATTTAAAATGAAACATTAGAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCCCATTTCACAGATGAAGAATTTAAAATGAAACATTAGAAGT  750

seq1  TAACTAGTAAGTCGAGGGCAGGAAGATGAATCCCCAGCCCATGTCTTTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTAAGTCGAGGGCAGGAAGATGAATCCCCAGCCCATGTCTTTAC  800

seq1  CCAGTGCACCACTCTGGCCTCCAATGCAGAATCTAGAAAGAGGCCATTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCACCACTCTGGCCTCCAATGCAGAATCTAGAAAGAGGCCATTCA  850

seq1  TGTGTTCTCCCGCCTGTAATAGAAATAGATGACTTCAGTCTCTGGAATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCCCGCCTGTAATAGAAATAGATGACTTCAGTCTCTGGAATTC  900