BAC Information

Click to search

BAC

Clone NameB6Ng01-104A19
Chromosome4 (Build37)
Map Location 147,374,189 - 147,513,449
singlet/doubletdoublet
Overlap geneNppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik
Upstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb
Downstream geneMad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104A19.bB6Ng01-104A19.g
ACCDH912459DH912460
length884996
definitionDH912459|Mus musculus domesticus DNA, BAC clone: B6Ng01-104A19, 5' end.DH912460|Mus musculus domesticus DNA, BAC clone: B6Ng01-104A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,374,189 - 147,375,071)(147,512,454 - 147,513,449)
sequence
gaattctttagagcctgtatcatgttggcttcctggctgacttcatactc
taaaaaaaaaataatagctctttcacctgactgctaacagggacatctag
ggtgggggtgggctgtctggggccagaggtccacccacgaggccgatgaa
tcaggtgtgaagctagctccagcatgtgtactccctggccagcctagctg
gcctcccagctgcctgtcattgcctcctctcccgcccttatttggagccc
ctgacagctgagcagcaagcagggggagctgggtgcaggccagccgtcac
cctctgcttccctgcatgggtcctgttgccagggagaaagaatcctgagg
cgagcgcccaggaagataaccaaggactcttttctgctcctctcacacct
ttgaagtgggggcctcttgaggcaaatcagcaagaatgtgactcttgcag
ctgagggtctgggggaggggggtgagtggagctgctcaaggcaaaggggc
cgtgacaagctttgccgaactgataactttaaaagggcatcttctgctgg
ctcctcactccatcgctttatcgctgcaagtgacagaatggggagggttc
tagcccccctgccttctcaaagagctggggggctataaaaacgggagatg
ctggcagctaggagacagtgacggacaaaagctgagagagagagagaaaa
gaaaccagagtgggcagagacagcaaacatcagatcgtgtcccgacccac
gccagcatgggctccttctccatcaccctggggcttcttcctcgtcttgg
ccttttggcttccaggccatattggagaaattctgtgtacagtgcggtgt
ccaacacagatctgaatggattcaaggtagggcc
gaattcagcttaactcacacccttctgtttaactgaaagaaaatctgagg
ttagagaaatggtctggagttaggggtgacatggcaggcctagaagccaa
gagaatttaaagaagtggttcaatgtgtgggcttcaacccctttggggtc
aaatgactctttcccaggggtggcatatcagatattctgcatatcagata
tttacaattcctgactgttgtgaaattgcagttatgaagtagcaatgaaa
ataattttatgattgggagtcaccacatgaggaactgtgtggaagggttg
cagcattaggaaggttgagaaccactgatttagactctgccctccaagga
tgtaagagttgtcttgtcctgtttctataggaaatgttgcattaaaggtc
atccctgcaatgtggtatgacacccaccccccactccccgcaccagaagc
tgtcaattccatattcatatccttctcatgggaagggataaggagcaggc
cagagggaggattaccctggaatgtgagcaaagcgggtctcaaaatgcag
acctaccaccaacatcttcatctcagtccccagggaccctattaaaccct
ggctgtccagctgccctgacttacctgaccagggcaggctaacagcaggg
ctctgctctttaacaagctccccagggaacctgtgtgcccacgaaactat
gggagctgccagtggagttctcctgcgttctgtaacatgcctgtgcttaa
gccggtagaatgctggtttggctttaggaattgatacacccgtcagtggg
cacagcaacccttctcaagactcggggaccttccccacattacaccatgt
tcaacagagccctttctacttagagctggctgggcagctcactgccttgt
agaccttagggcagtgagtttcatcatggtgggggtggggaaggatccaa
tcctttatccacccaccccccctgctcctgaacagcgttttcatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147374189_147375071
seq2: B6Ng01-104A19.b_34_917

seq1  GAATTCTTTAGAGCCTGTATCATGTTGGCTTCCTGGCTGACTTCATACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAGCCTGTATCATGTTGGCTTCCTGGCTGACTTCATACTC  50

seq1  TAAAAAAAAAATAATAGCTCTTTCACCTGACTGCTAACAGGGACATCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAATAATAGCTCTTTCACCTGACTGCTAACAGGGACATCTAG  100

seq1  GGTGGGGGTGGGCTGTCTGGGGCCAGAGGTCCACCCACGAGGCCGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTGGGCTGTCTGGGGCCAGAGGTCCACCCACGAGGCCGATGAA  150

seq1  TCAGGTGTGAAGCTAGCTCCAGCATGTGTACTCCCTGGCCAGCCTAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGAAGCTAGCTCCAGCATGTGTACTCCCTGGCCAGCCTAGCTG  200

seq1  GCCTCCCAGCTGCCTGTCATTGCCTCCTCTCCCGCCCTTATTTGGAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAGCTGCCTGTCATTGCCTCCTCTCCCGCCCTTATTTGGAGCCC  250

seq1  CTGACAGCTGAGCAGCAAGCAGGGGGAGCTGGGTGCAGGCCAGCCGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCTGAGCAGCAAGCAGGGGGAGCTGGGTGCAGGCCAGCCGTCAC  300

seq1  CCTCTGCTTCCCTGCATGGGTCCTGTTGCCAGGGAGAAAGAATCCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCCCTGCATGGGTCCTGTTGCCAGGGAGAAAGAATCCTGAGG  350

seq1  CGAGCGCCCAGGAAGATAACCAAGGACTCTTTTCTGCTCCTCTCACACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCGCCCAGGAAGATAACCAAGGACTCTTTTCTGCTCCTCTCACACCT  400

seq1  TTGAAGTGGGGGCCTCTTGAGGCAAATCAGCAAGAATGTGACTCTTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGGGGGCCTCTTGAGGCAAATCAGCAAGAATGTGACTCTTGCAG  450

seq1  CTGAGGGTCTGGGGGAGGGGGGTGAGTGGAGCTGCTCAAGGCAAAGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTCTGGGGGAGGGGGGTGAGTGGAGCTGCTCAAGGCAAAGGGGC  500

seq1  CGTGACAAGCTTTGCCGAACTGATAACTTTAAAAGGGCATCTTCTGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACAAGCTTTGCCGAACTGATAACTTTAAAAGGGCATCTTCTGCTGG  550

seq1  CTCCTCACTCCATCGCTTTATCGCTGCAAGTGACAGAATGGGGAGGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACTCCATCGCTTTATCGCTGCAAGTGACAGAATGGGGAGGGTTC  600

seq1  TAGCCCCCCTGCCTTCTCAAAGAGCTGGGGGGCTATAAAAACGGGAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCCCTGCCTTCTCAAAGAGCTGGGGGGCTATAAAAACGGGAGATG  650

seq1  CTGGCAGCTAGGAGACAGTGACGGACAAAAGCTGAGAGAGAGAGAG-AAA  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGGCAGCTAGGAGACAGTGACGGACAAAAGCTGAGAGAGAGAGAGAAAA  700

seq1  GAAACCAGAGTGGGCAGAGACAGCAAACATCAGATCGTGCCCCGACCCAC  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAAACCAGAGTGGGCAGAGACAGCAAACATCAGATCGTGTCCCGACCCAC  750

seq1  GCCAGCATGGGCTCCTTCTCCATCACCCT-GGGCTTCTTCCTCGTCTTGG  798
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCAGCATGGGCTCCTTCTCCATCACCCTGGGGCTTCTTCCTCGTCTTGG  800

seq1  CCTTTTGGCTTCCAGGCCATATTGGAGCAAATCCTGTGTACAGTGCGGTG  848
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  CCTTTTGGCTTCCAGGCCATATTGGAG-AAATTCTGTGTACAGTGCGGTG  849

seq1  TCCAACACAGATCTG-ATGGATTTCAAGGTAGGGCC  883
      ||||||||||||||| ||||| ||||||||||||||
seq2  TCCAACACAGATCTGAATGGA-TTCAAGGTAGGGCC  884

seq1: chr4_147512454_147513449
seq2: B6Ng01-104A19.g_68_1063 (reverse)

seq1  TAATGAAAACGCTGTTCAGGAGCTGGGGGGTGGGGTGGATAAAGGACTCG  50
      ||||||||||||||||||||||| ||||||  |||||||||||||| | |
seq2  TAATGAAAACGCTGTTCAGGAGCAGGGGGGGTGGGTGGATAAAGGATTGG  50

seq1  GTCATTCCCCA-CCCCACCATGATGAAAACTCACTGCCCTAAGGTCTACA  99
       || ||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  ATCCTTCCCCACCCCCACCATGATG-AAACTCACTGCCCTAAGGTCTACA  99

seq1  AGGCAGTGAGCTGCCCAGCCAGCTCTAAGTAGAAAGGGCTCTGTTGAACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGAGCTGCCCAGCCAGCTCTAAGTAGAAAGGGCTCTGTTGAACA  149

seq1  TGGTGTAATGTGGGGAAGGTCCCCGAGTCTTGAGAAGGGTTGCTGTGCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAATGTGGGGAAGGTCCCCGAGTCTTGAGAAGGGTTGCTGTGCCC  199

seq1  ACTGACGGGTGTATCAATTCCTAAAGCCAAACCAGCATTCTACCGGCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACGGGTGTATCAATTCCTAAAGCCAAACCAGCATTCTACCGGCTTA  249

seq1  AGCACAGGCATGTTACAGAACGCAGGAGAACTCCACTGGCAGCTCCCATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGCATGTTACAGAACGCAGGAGAACTCCACTGGCAGCTCCCATA  299

seq1  GTTTCGTGGGCACACAGGTTCCCTGGGGAGCTTGTTAAAGAGCAGAGCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGTGGGCACACAGGTTCCCTGGGGAGCTTGTTAAAGAGCAGAGCCC  349

seq1  TGCTGTTAGCCTGCCCTGGTCAGGTAAGTCAGGGCAGCTGGACAGCCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTAGCCTGCCCTGGTCAGGTAAGTCAGGGCAGCTGGACAGCCAGG  399

seq1  GTTTAATAGGGTCCCTGGGGACTGAGATGAAGATGTTGGTGGTAGGTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAGGGTCCCTGGGGACTGAGATGAAGATGTTGGTGGTAGGTCTG  449

seq1  CATTTTGAGACCCGCTTTGCTCACATTCCAGGGTAATCCTCCCTCTGGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAGACCCGCTTTGCTCACATTCCAGGGTAATCCTCCCTCTGGCC  499

seq1  TGCTCCTTATCCCTTCCCATGAGAAGGATATGAATATGGAATTGACAGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTATCCCTTCCCATGAGAAGGATATGAATATGGAATTGACAGCT  549

seq1  TCTGGTGCGGGGAGTGGGGGGTGGGTGTCATACCACATTGCAGGGATGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGCGGGGAGTGGGGGGTGGGTGTCATACCACATTGCAGGGATGAC  599

seq1  CTTTAATGCAACATTTCCTATAGAAACAGGACAAGACAACTCTTACATCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGCAACATTTCCTATAGAAACAGGACAAGACAACTCTTACATCC  649

seq1  TTGGAGGGCAGAGTCTAAATCAGTGGTTCTCAACCTTCCTAATGCTGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGCAGAGTCTAAATCAGTGGTTCTCAACCTTCCTAATGCTGCAA  699

seq1  CCCTTCCACACAGTTCCTCATGTGGTGACTCCCAATCATAAAATTATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCACACAGTTCCTCATGTGGTGACTCCCAATCATAAAATTATTTT  749

seq1  CATTGCTACTTCATAACTGCAATTTCACAACAGTCAGGAATTGTAAATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTACTTCATAACTGCAATTTCACAACAGTCAGGAATTGTAAATAT  799

seq1  CTGATATGCAGAATATCTGATATGCCACCCCTGGGAAAGAGTCATTTGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGCAGAATATCTGATATGCCACCCCTGGGAAAGAGTCATTTGAC  849

seq1  CCCAAAGGGGTTGAAGCCCACACATTGAACCACTTCTTTAAATTCTCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGGGTTGAAGCCCACACATTGAACCACTTCTTTAAATTCTCTTG  899

seq1  GCTTCTAGGCCTGCCATGTCACCCCTAACTCCAGACCATTTCTCTAACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGGCCTGCCATGTCACCCCTAACTCCAGACCATTTCTCTAACCT  949

seq1  CAGATTTTCTTTCAGTTAAACAGAAGGGTGTGAGTTAAGCTGAATTC  996
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTCTTTCAGTTAAACAGAAGGGTGTGAGTTAAGCTGAATTC  996