BAC Information

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BAC

Clone NameB6Ng01-104C05
Chromosome4 (Build37)
Map Location 136,834,783 - 136,984,622
singlet/doubletdoublet
Overlap geneWnt4, Cdc42, LOC665533, LOC242711, Ela3
Upstream geneZfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40
Downstream gene1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104C05.bB6Ng01-104C05.g
ACCDH912524DH912525
length746915
definitionDH912524|Mus musculus domesticus DNA, BAC clone: B6Ng01-104C05, 5' end.DH912525|Mus musculus domesticus DNA, BAC clone: B6Ng01-104C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,834,783 - 136,835,529)(136,983,705 - 136,984,622)
sequence
gaattctcccagctgttccgagagctcgtaaacctctgaggcccaaagtg
gctgcattgtttttcctggattcttaatttgattaacacttcaggggcag
tggcagagtggacagaaaccagggcacagccaccgtcccctcccctcccg
ccccccacttcttgcagaatgctccctcccccagtgagacctgggttgca
gacctgagaaagcactttgcacttgaaggagtctggggtctctggagttg
cctcttaaatagataggtttagaggtctgagcatcaggggaaactagaag
ttcagctgacctgcccagcaccaagcagtacaaaaaaaaaaaaaaaaaaa
aaaaagccaaggaaacagtgagaagtgtgtgagccaggcctgcagcaaac
acggagacagctgccacagaaaggccctccgacgctcctggctctttagc
tccctttatagatgaggaaaactaaggcccagggaagggagctacttacc
aaactgaagacggaactcagatgcttctgtttccagacaaggataatcta
cttcatgcctgaggctgtcctgaagttgacccagtacacccaggtagaat
tgccacccgcctccagccatgtccaccacgccccagtcccagctagggag
gcagccccagcttcaggtcttgcaaagcaaggggaattccagagctcggt
tcttgagccttgtgcctgcaccgtggggggtgggtaaggggggggg
gaattcaccatataggtcaagctggccttgaatatacagaattcagcttg
cctctgcctccaaatgcaccatgctcaaacaccagctctcccaccccgac
ccctttcttctgaggacactctggctgactggcttctcaattgtcacctc
tagcctcaggctgtggacagccttcccacaacccctccagccgagttgtc
aatggcgaggaagctgttccccacagctggccctggcaggtaagagtgac
agcagctgcccccaccaccactccccacgcctgcttctactatgggcact
gaaccccaggtctggtgacatggcagcctgccttgaccccaccagttcct
ctccactcccttctttgacttcaaaaggccggaaactcttggagagagat
atttcttggaggttgtaactgttccatctgcaatctcggctgggatttga
aagtggaatttggggaaagggtggtgcttaagagattggcttaatagcag
tggaacttcgggggctgtgtttagaggaaagattttgtttctaatctccc
tgggttctacaaaagggtcaaagttctgggagcttaaaagggttaggaac
ttcatagaggttcatggggagatgttcatagggctaaactccctgtctaa
caatagtcacaagccacgtgtgactatagtttactataaagtaaggcaga
catagttgttccatacaaacttgtaacccagtagaggcagaaggatcagg
agttcaagatcagcctcagctacacagcaagtttgatgtcactctgactt
ctaagagaccctgtctcaagaccaaacccagacctggagagagctgagtg
gtgaagagtgcttgctgatcttccagagacctgattcatttcctagtctg
gcagcttaagaccgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136834783_136835529
seq2: B6Ng01-104C05.b_38_783

seq1  GAATTCTCCCAGCTGTTCCGAGAGCTCGCAATTCCTCTGAGGCCCAAAGT  50
      |||||||||||||||||||||||||||| ||  |||||||||||||||||
seq2  GAATTCTCCCAGCTGTTCCGAGAGCTCGTAA-ACCTCTGAGGCCCAAAGT  49

seq1  GGCTGCATTGTTTTTCCTGGATTCTTAATTTGATTAACACTTCAGGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCATTGTTTTTCCTGGATTCTTAATTTGATTAACACTTCAGGGGCA  99

seq1  GTGGCAGAGTGGACAGAAACCAGGGCACAGCCACCGTCCCCTCCCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAGTGGACAGAAACCAGGGCACAGCCACCGTCCCCTCCCCTCCC  149

seq1  GCCCCCCACTTCTTGCAGAATGCTCCCTCCCCCAGTGAGACCTGGGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCACTTCTTGCAGAATGCTCCCTCCCCCAGTGAGACCTGGGTTGC  199

seq1  AGACCTGAGAAAGCACTTTGCACTTGAAGGAGTCTGGGGTCTCTGGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGAGAAAGCACTTTGCACTTGAAGGAGTCTGGGGTCTCTGGAGTT  249

seq1  GCCTCTTAAATAGATAGGTTTAGAGGTCTGAGCATCAGGGGAAACTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTAAATAGATAGGTTTAGAGGTCTGAGCATCAGGGGAAACTAGAA  299

seq1  GTTCAGCTGACCTGCCCAGCACCAAGCAGTACAAAAAAAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTGACCTGCCCAGCACCAAGCAGTACAAAAAAAAAAAAAAAAAA  349

seq1  AAAAAAGCCAAGGAAACAGTGAGAAGTGTGTGAGCCAGGCCTGCAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCCAAGGAAACAGTGAGAAGTGTGTGAGCCAGGCCTGCAGCAAA  399

seq1  CACGGAGACAGCTGCCACAGAAAGGCCCTCCGACGCTCCTGGCTCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGACAGCTGCCACAGAAAGGCCCTCCGACGCTCCTGGCTCTTTAG  449

seq1  CTCCCTTTATAGATGAGGAAAACTAAGGCCCAGGGAAGGGAGCTACTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTATAGATGAGGAAAACTAAGGCCCAGGGAAGGGAGCTACTTAC  499

seq1  CAAACTGAAGACGGAACTCAGATGCTTCTGTTTCCAGACAAGGATAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAAGACGGAACTCAGATGCTTCTGTTTCCAGACAAGGATAATCT  549

seq1  ACTTCATGCCTGAGGCTGTCCTGAAGTTGACCCAGTACACCCAGGTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGCCTGAGGCTGTCCTGAAGTTGACCCAGTACACCCAGGTAGAA  599

seq1  TTGCCACCCGCCTCCAGCCATGTCCACCACGCCCCAGTCCCAGCTAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCCGCCTCCAGCCATGTCCACCACGCCCCAGTCCCAGCTAGGGA  649

seq1  GGCAGCCCCAGCTTCAGGTCTTGCAAAGCAAGGGGAATTCCAGAGCTCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCCAGCTTCAGGTCTTGCAAAGCAAGGGGAATTCCAGAGCTCGG  699

seq1  TTCTTGAGCCTTGTGCCTGCACCGTGGGGGGTGGGTAAGGGGGGGGG  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGCCTTGTGCCTGCACCGTGGGGGGTGGGTAAGGGGGGGGG  746

seq1: chr4_136983705_136984622
seq2: B6Ng01-104C05.g_69_983 (reverse)

seq1  GCGGTCTTAAGCTGCCAGACTAGGAACTGAACTCAGGTCCTCTGGAAGAT  50
      |||||||||||||||||||||||||| |||| |||||| |||||||||||
seq2  GCGGTCTTAAGCTGCCAGACTAGGAAATGAA-TCAGGT-CTCTGGAAGAT  48

seq1  CAGCAAGCACTCTTCACCACTCAGCTCTCTCCAGGTCTGGGTTTGGTTCT  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGCAAGCACTCTTCACCACTCAGCTCTCTCCAGGTCTGGGTTTGG-TCT  97

seq1  TGAGACAGGGTCTCTTAGAAGTCAGAGTGACATCAAACTTGCTGTGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTCTCTTAGAAGTCAGAGTGACATCAAACTTGCTGTGTAGC  147

seq1  TGAGGCTGATCTTGAACTCCTGATCCTTCTGCCTCTACTGGGTTACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGATCTTGAACTCCTGATCCTTCTGCCTCTACTGGGTTACAAGT  197

seq1  TTGTATGGAACAACTATGTCTGCCTTACTTTATAGTAAACTATAGTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGAACAACTATGTCTGCCTTACTTTATAGTAAACTATAGTCACA  247

seq1  CGTGGCTTGTGACTATTGTTAGACAGGGAGTTTAGCCCTATGAACATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTTGTGACTATTGTTAGACAGGGAGTTTAGCCCTATGAACATCTC  297

seq1  CCCATGAACCTCTATGAAGTTCCTAACCCTTTTAAGCTCCCAGAACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAACCTCTATGAAGTTCCTAACCCTTTTAAGCTCCCAGAACTTTG  347

seq1  ACCCTTTTGTAGAACCCAGGGAGATTAGAAACAAAATCTTTCCTCTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTGTAGAACCCAGGGAGATTAGAAACAAAATCTTTCCTCTAAAC  397

seq1  ACAGCCCCCGAAGTTCCACTGCTATTAAGCCAATCTCTTAAGCACCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCCGAAGTTCCACTGCTATTAAGCCAATCTCTTAAGCACCACCC  447

seq1  TTTCCCCAAATTCCACTTTCAAATCCCAGCCGAGATTGCAGATGGAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAAATTCCACTTTCAAATCCCAGCCGAGATTGCAGATGGAACAG  497

seq1  TTACAACCTCCAAGAAATATCTCTCTCCAAGAGTTTCCGGCCTTTTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACCTCCAAGAAATATCTCTCTCCAAGAGTTTCCGGCCTTTTGAAG  547

seq1  TCAAAGAAGGGAGTGGAGAGGAACTGGTGGGGTCAAGGCAGGCTGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAGGGAGTGGAGAGGAACTGGTGGGGTCAAGGCAGGCTGCCATG  597

seq1  TCACCAGACCTGGGGTTCAGTGCCCATAGTAGAAGCAGGCGTGGGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGACCTGGGGTTCAGTGCCCATAGTAGAAGCAGGCGTGGGGAGTG  647

seq1  GTGGTGGGGGCAGCTGCTGTCACTCTTACCTGCCAGGGCCAGCTGTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGGGCAGCTGCTGTCACTCTTACCTGCCAGGGCCAGCTGTGGGG  697

seq1  AACAGCTTCCTCGCCATTGACAACTCGGCTGGAGGGGTTGTGGGAAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTCCTCGCCATTGACAACTCGGCTGGAGGGGTTGTGGGAAGGCT  747

seq1  GTCCACAGCCTGAGGCTAGAGGTGACAATTGAGAAGCCAGTCAGCCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAGCCTGAGGCTAGAGGTGACAATTGAGAAGCCAGTCAGCCAGAG  797

seq1  TGTCCTCAGAAGAAAGGGGTCGGGGTGGGAGAGCTGGTGTTTGAGCATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAGAAGAAAGGGGTCGGGGTGGGAGAGCTGGTGTTTGAGCATGG  847

seq1  TGCATTTGGAGGCAGAGGCAAGCTGAATTCTGTATATTCAAGGCCAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGGAGGCAGAGGCAAGCTGAATTCTGTATATTCAAGGCCAGCTT  897

seq1  GACCTATATGGTGAATTC  918
      ||||||||||||||||||
seq2  GACCTATATGGTGAATTC  915