BAC Information

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BAC

Clone NameB6Ng01-105L19
Chromosome4 (Build37)
Map Location 140,249,496 - 140,380,329
singlet/doubletdoublet
Overlap geneRcc2, Padi6, Padi4, Padi3, Padi1
Upstream genePax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l
Downstream genePadi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105L19.bB6Ng01-105L19.g
ACCDH913675DH913676
length1,0631,124
definitionDH913675|Mus musculus domesticus DNA, BAC clone: B6Ng01-105L19, 5' end.DH913676|Mus musculus domesticus DNA, BAC clone: B6Ng01-105L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,249,496 - 140,250,564)(140,379,177 - 140,380,329)
sequence
gaattctttcttggcattaaaaggcccagagtggtggcacaggggaacta
ctattgagtttccccatttggaaacctccttccaagccaagcaggtctgt
tatctgtgaaagaaaagaaacaactttactccgataggaaggaagtcctg
tctggagatccggcctgtggactaggaggtggctggctgagaaacacaca
cacacacacacacacacacacacactgctacctctagagctgctgctgtg
ggagttttggagtattgatgaaggccttagagttcacagatgtctaaggc
agaggcagagaatctgcaactcccaagagctccaaacttttttatttttt
tcttttggtttttcgagacagggttgctctgtgtagccctggctgtcctg
gaactcactctgtagaccaggctggctcgaactcagaaatccccctgcct
cccaagtgctgagattaaaggcatgcgccaccactgcctgacttttgtga
aaatctaccagcctctgcccttgagtgctggattaaaggaatatgccccg
ggccaggcttcaattcttccgtcttacagcctggggggaattgaattcaa
ttcctaattctcccaattgctgggattactgctgcataaccaaaaagcaa
aacaacaacaacaaaaactgagggaaggttattttgtttgagacagggtt
tttcagactgactgctcttccgaaggtcctgagttcaaatctcaacaacc
acatggtggctcacaaccaccggtaatgagatctgacgccctcttctggt
gtgcctgaagacagctacagtgtacttatcatattaataaataaaatctt
tcaaaaaaaaaccaaaggacatagggtttttcgttgtagcaccagctgtc
ctggaactctgtgaccaggctggcctagaatcacagagatttgccggcct
cttgcctcccagaaaagattttcaaattatttagtaagttttgaaatgat
atgtatgaagctgccttgaactctgaaacttcactgctttgcttccaggt
tctgaattattaa
gaattcaaaagccagcctggactaatgagaacctgtctaaagtcagccaa
gctgggaggtgacatgccctctgccacataagcagggacagaatgggaag
ccagtcgctgttatcctgtcttggaagggtccagaggcagaataggcagc
tggaactgagcgagtaaccagctaggtaccctcgtggcagggcatctcgg
cggccctatgccgaccagctgtgatggagcagaggtcaagattcagttaa
cacgtagacagatgcctgcttactacaccgagtgggttcctcccctcccc
caagtagcccacaggagcaccactcaaccacaaaccctggataacctttt
catttgtgaagcttggtatggagcctgggtgtgccctaactcatcctctg
aggcccagctggcctctgacagtagaaaggtcacatagcctcaggtggaa
agcccaaggctgtgaaatcatacaagggagaggttgctggtaccaaggga
ggcacacagctgggtgccgcggcctgctgtactgggttgagtgtagctgg
gggtgaccctgccggacacccatctcagatagcgtacaggggctggtcct
accacagcctgggcttcaggcctggagggcttcagggagggagctgtgag
tctctggagtccgatgcccacaaatgtgagctgtgctgctcagccgcagt
caccacggtgtgcggcaaattgtcagtggtcagtttgttcattcacatta
aggtcacgtgccaggcacgtgggtgtggagcatggtggtacaaccctgta
accccagtatgcaagagggtgaaacaggaaagccgtgagttcaaagccag
gccaggctgcagtgaggtgtgtgtctccaaaacaaaaacccaacaaacaa
acctaaattaaatacactagaagggaaagacgagcaacaacaaaaagcag
catcagagaggacattctaggatgcggagaggcatgctggtactttttaa
ataatgattcttttcttcccatgcctcattttctctagctgtaaatggcc
ctataaacaggccctcctgcctggggctggccgatggcctacttggcaag
gtgcctgtttgcatgtgaaggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140249496_140250564
seq2: B6Ng01-105L19.b_49_1111

seq1  GAATTCTTTCTTGGCATTAAAAGGCCCAGAGTGGTGGCACAGGGGAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGGCATTAAAAGGCCCAGAGTGGTGGCACAGGGGAACTA  50

seq1  CTATTGAGTTTCCCCATTTGGAAACCTCCTTCCAAGCCAAGCAGGTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGTTTCCCCATTTGGAAACCTCCTTCCAAGCCAAGCAGGTCTGT  100

seq1  TATCTGTGAAAGAAAAGAAACAACTTTACTCCGATAGGAAGGAAGTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGAAAGAAAAGAAACAACTTTACTCCGATAGGAAGGAAGTCCTG  150

seq1  TCTGGAGATCCGGCCTGTGGACTAGGAGGTGGCTGGCTGAGAAACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATCCGGCCTGTGGACTAGGAGGTGGCTGGCTGAGAAACACACA  200

seq1  CACACACACACACACACACACACACTGCTACCTCTAGAGCTGCTGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACTGCTACCTCTAGAGCTGCTGCTGTG  250

seq1  GGAGTTTTGGAGTATTGATGAAGGCCTTAGAGTTCACAGATGTCTAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTGGAGTATTGATGAAGGCCTTAGAGTTCACAGATGTCTAAGGC  300

seq1  AGAGGCAGAGAATCTGCAACTCCCAAGAGCTCCAAACTTTTTTATTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGAATCTGCAACTCCCAAGAGCTCCAAACTTTTTTATTTTTT  350

seq1  TCTTTTGGTTTTTCGAGACAGGGTTGCTCTGTGTAGCCCTGGCTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTTTTTCGAGACAGGGTTGCTCTGTGTAGCCCTGGCTGTCCTG  400

seq1  GAACTCACTCTGTAGACCAGGCTGGCTCGAACTCAGAAATCCCCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCTCGAACTCAGAAATCCCCCTGCCT  450

seq1  CCCAAGTGCTGAGATTAAAGGCATGCGCCACCACTGCCTGACTTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGAGATTAAAGGCATGCGCCACCACTGCCTGACTTTTGTGA  500

seq1  AAATCTACCAGCCTCTGCCCTTGAGTGCTGGATTAAAGGAATATGCCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACCAGCCTCTGCCCTTGAGTGCTGGATTAAAGGAATATGCCCCG  550

seq1  GGCCAGGCTTCAATTCTTCCGTCTTACAGCCTGGGGGGAATTGAATTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTTCAATTCTTCCGTCTTACAGCCTGGGGGGAATTGAATTCAA  600

seq1  TTCCTAATTCTCCCAATTGCTGGGATTACTGCTGCATAACCAAAAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATTCTCCCAATTGCTGGGATTACTGCTGCATAACCAAAAAGCAA  650

seq1  AACAACAACAACAAAAACTGAGGGAAGGTTATTTTGTTTGAGACAGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAAAAACTGAGGGAAGGTTATTTTGTTTGAGACAGGGTT  700

seq1  TTTCAGACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCTCAACAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCTCAACAACC  750

seq1  ACATGGTGGCTCACAACCACCGGTAATGAGATCTGACGCCCTCTTCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGGCTCACAACCACCGGTAATGAGATCTGACGCCCTCTTCTGGT  800

seq1  GTGCCTGAAGACAGCTACAGTGTACTTA-CATA-TAATAAAT-AAATCTT  847
      |||||||||||||||||||||||||||| |||| |||||||| |||||||
seq2  GTGCCTGAAGACAGCTACAGTGTACTTATCATATTAATAAATAAAATCTT  850

seq1  TCAAAAAAAAACC-AAGGACATAGGGTTTTTCGTTGTAGCACCAGCTGTC  896
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAACCAAAGGACATAGGGTTTTTCGTTGTAGCACCAGCTGTC  900

seq1  CTGGAACTCTGTAGACCAGGCTGGCCTAGGAATCACAGAGATTTGCCGGC  946
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  CTGGAACTCTGT-GACCAGGCTGGCCTA-GAATCACAGAGATTTGCCGGC  948

seq1  CTC-TGCCTCCCAAGAAAAGATTTTCAAAATTTATTTAGTAAGTTTTTGA  995
      ||| |||||||| ||||||||||||||||  |||||||||||| ||||||
seq2  CTCTTGCCTCCC-AGAAAAGATTTTCAAA--TTATTTAGTAAG-TTTTGA  994

seq1  AATGATATGTAGTGGAAGCTGGCCTTGAACTCAGAAAACTCCACCTGCCT  1045
      |||||||||||   |||||| ||||||||||| | ||||| || ||| ||
seq2  AATGATATGTA--TGAAGCT-GCCTTGAACTCTG-AAACTTCA-CTG-CT  1038

seq1  TTGCTTCCCAAGTTCTGAA--ATTAA  1069
      |||||| ||| ||||||||  |||||
seq2  TTGCTT-CCAGGTTCTGAATTATTAA  1063

seq1: chr4_140379177_140380329
seq2: B6Ng01-105L19.g_71_1194 (reverse)

seq1  AGACCTTCACACTTGCAAAGCAGGCACCTTGCCCAGTAGGCAATCCGGCC  50
      |||||||||||  |||||| ||||||||||||| ||||||| || |||||
seq2  AGACCTTCACA--TGCAAA-CAGGCACCTTGCCAAGTAGGCCAT-CGGCC  46

seq1  AGCCCCAAGCGAGAGGGCTGTTTTATTAGGGCCCATTTTACAGCTAGAGA  100
      ||||||| ||  ||||||   |||| |||||||   ||||||||||||||
seq2  AGCCCCAGGCAGGAGGGCCTGTTTA-TAGGGCC--ATTTACAGCTAGAGA  93

seq1  AAATGAGGCATGGGATAGAAAAGAAATCATTTATTTAAAAAGTACCAGCA  150
      ||||||||||||||| ||||||| ||||| ||||||||||||||||||||
seq2  AAATGAGGCATGGGA-AGAAAAG-AATCA-TTATTTAAAAAGTACCAGCA  140

seq1  TTGCCCTCTCCGCATCCTTAGAATGTCCTCTTCTGGATGCTGCTTTTTTG  200
      |   ||||||||||||| |||||||||||| ||| |||||||| ||||||
seq2  T--GCCTCTCCGCATCC-TAGAATGTCCTC-TCT-GATGCTGC-TTTTTG  184

seq1  TTTGTTTTGCTTCGTTCTTTTCCTTTCTAGTTGTAATTTTAATTTAGGTT  250
      |   | |||| ||||   ||||| |||||| ||||  ||||||||||| |
seq2  T---TGTTGC-TCGT--CTTTCCCTTCTAG-TGTA--TTTAATTTAGG-T  224

seq1  TTGTTTTGTTTGGGTTTTTGGTTTTGGAGACACACACCTCACTGCAGCCT  300
      ||||||   |||||||||| ||||||||||||||||||||||||||||||
seq2  TTGTTT--GTTGGGTTTTT-GTTTTGGAGACACACACCTCACTGCAGCCT  271

seq1  GGCCTGGCTTTGAACTCACGGCTTTCCTGTTTCACCCTCTTGCATACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCTTTGAACTCACGGCTTTCCTGTTTCACCCTCTTGCATACTGG  321

seq1  GGTTACAGGGTTGTACCACCATGCTCCACACCCACGTGCCTGGCACGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGGGTTGTACCACCATGCTCCACACCCACGTGCCTGGCACGTGA  371

seq1  CCTTAATGTGAATGAACAAACTGACCACTGACAATTTGCCGCACACCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATGTGAATGAACAAACTGACCACTGACAATTTGCCGCACACCGTG  421

seq1  GTGACTGCGGCTGAGCAGCACAGCTCACATTTGTGGGCATCGGACTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGCGGCTGAGCAGCACAGCTCACATTTGTGGGCATCGGACTCCAG  471

seq1  AGACTCACAGCTCCCTCCCTGAAGCCCTCCAGGCCTGAAGCCCAGGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACAGCTCCCTCCCTGAAGCCCTCCAGGCCTGAAGCCCAGGCTGT  521

seq1  GGTAGGACCAGCCCCTGTACGCTATCTGAGATGGGTGTCCGGCAGGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGACCAGCCCCTGTACGCTATCTGAGATGGGTGTCCGGCAGGGTCA  571

seq1  CCCCCAGCTACACTCAACCCAGTACAGCAGGCCGCGGCACCCAGCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCTACACTCAACCCAGTACAGCAGGCCGCGGCACCCAGCTGTGT  621

seq1  GCCTCCCTTGGTACCAGCAACCTCTCCCTTGTATGATTTCACAGCCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTTGGTACCAGCAACCTCTCCCTTGTATGATTTCACAGCCTTGG  671

seq1  GCTTTCCACCTGAGGCTATGTGACCTTTCTACTGTCAGAGGCCAGCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCACCTGAGGCTATGTGACCTTTCTACTGTCAGAGGCCAGCTGGG  721

seq1  CCTCAGAGGATGAGTTAGGGCACACCCAGGCTCCATACCAAGCTTCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGGATGAGTTAGGGCACACCCAGGCTCCATACCAAGCTTCACAA  771

seq1  ATGAAAAGGTTATCCAGGGTTTGTGGTTGAGTGGTGCTCCTGTGGGCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGGTTATCCAGGGTTTGTGGTTGAGTGGTGCTCCTGTGGGCTAC  821

seq1  TTGGGGGAGGGGAGGAACCCACTCGGTGTAGTAAGCAGGCATCTGTCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGAGGGGAGGAACCCACTCGGTGTAGTAAGCAGGCATCTGTCTAC  871

seq1  GTGTTAACTGAATCTTGACCTCTGCTCCATCACAGCTGGTCGGCATAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAACTGAATCTTGACCTCTGCTCCATCACAGCTGGTCGGCATAGGG  921

seq1  CCGCCGAGATGCCCTGCCACGAGGGTACCTAGCTGGTTACTCGCTCAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGAGATGCCCTGCCACGAGGGTACCTAGCTGGTTACTCGCTCAGTT  971

seq1  CCAGCTGCCTATTCTGCCTCTGGACCCTTCCAAGACAGGATAACAGCGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCCTATTCTGCCTCTGGACCCTTCCAAGACAGGATAACAGCGAC  1021

seq1  TGGCTTCCCATTCTGTCCCTGCTTATGTGGCAGAGGGCATGTCACCTCCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCCATTCTGTCCCTGCTTATGTGGCAGAGGGCATGTCACCTCCC  1071

seq1  AGCTTGGCTGACTTTAGACAGGTTCTCATTAGTCCAGGCTGGCTTTTGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGCTGACTTTAGACAGGTTCTCATTAGTCCAGGCTGGCTTTTGAA  1121

seq1  TTC  1153
      |||
seq2  TTC  1124