BAC Information

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BAC

Clone NameB6Ng01-105N14
Chromosome4 (Build37)
Map Location 100,181,393 - 100,346,152
singlet/doubletdoublet
Overlap geneUbe2u, LOC277707, LOC621573
Upstream geneLOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2, Ror1
Downstream geneCachd1, LOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105N14.bB6Ng01-105N14.g
ACCDH913758DH913759
length8691,172
definitionDH913758|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N14, 5' end.DH913759|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,181,393 - 100,182,261)(100,344,979 - 100,346,152)
sequence
gaattcatctgcttgtttatattttctctcaagtcattgatcaactttac
cacaaaacccgtaggaaggaaccaaactgaagccattttgagtaaagctt
ccattttgaataggggtcaaataaagtttaagtttccaagacctccctag
gtaactgacatcctggttggcagagaaacacctgtatgtgaataactgac
atgctggctggcaagttgagacatgaatgctagacaagtaatcctagcca
agtcacctcaccaaccaatgagaacaagataaatgtaccacatagtgaaa
tgttcctaagaaagtccccctttcctaaatcctgattggtggaaaaaatg
taactgtaacttagcatcgatgtttgtggttttcaagtctctgggtcagc
ctccatgtctgttctatgtccctgatctatcagtagtggcttgattacaa
taaatctttgttgtctcttgatctggtgtttgagtcatgttggatctaag
cagatgccataaaaaaaaaaacctttgaaatctttatctgaaatctttct
tacttcagcatctttcattttaggaactgaggagttaagaacttttgtag
gcaccacattacctttccttttctaggctctgcatttctgggttacagtc
tatgcgtctgttggttagtaaaggcttctggattctggcagtagacatgt
aatctcttcaataacactcaacgaggaagaaataaactcctgtgccagca
acatcaacaaacaacatatggaaatacacttatggtgatgtatttatatg
tgtatgtatgcctgtgtatgtgtatgtatacacatctgtgtctatgtgtg
tgtgtgaggtgtaggggtg
gaattccagagaaaagaattggtagccagggatggtgggacttaagcatc
tctttataagctgctccttccccagcttttcaaaaaaaaaaaaaatgtag
agcagcgatgccccacctcaaacaacttcacaaatcaggagtaaataaat
aaataaataaataaataaataaataaataaataataaaaaaacaaggacc
accaagagttattaaattacagagcccccaaagaggactagagggagcag
aggcaactgtgttaatgagagatcacagggagcctagaggggtgagaggc
ctgaggtgtgagctgagtgctgagtggaatggcagagttctgtggccttg
agctctctctccaccagcttccaaactgtgccaggccctgccattctctg
cgaagcagtgccattctgtggttgcattaacttcctgtgcctcaattacc
ctgcattctggaggctgggatcttttttgaaggatgggcatggtctcatc
tttggtaggtttaacctaggaggtaaggtgccagcatccagtcaccaaag
gctgcactgagccaatgacttttggattctttaccctataaacccaaaga
atgaatttcatgaacaatggagggtgagttttaaaaagagttttcaatat
agagagaaactgaaagacagacgagttactgcagaacccaacctctgggg
cccctatggcttctctaatcaagaggacagttgccttaatagagtcacag
aaccctctgagaagtgtcccattatctcctcaggtctgatcaatgtaggg
acatggtcaaaaatattggctgttcttttagtccttatatcctcattggc
tttggccttaagagtttttcagcatcactctagtctctacttcttgttca
cattgccttctctcttctcttgtcaaatgtctcatccatattaagggccc
acccatgtgacctgagatatgcctctatctcaagatccctaatcaaatca
cagctgccagtcctttctgccagagggagcagcacatacgctgataatac
acaatggggtttactcagccgtaaagaagaatgagctcttgtcatctgtg
ggaaaaaggatggatcatctttgctaaatgaaagttagcctaactccgaa
gacagactttaattctctcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_100181393_100182261
seq2: B6Ng01-105N14.b_45_913

seq1  GAATTCATCTGCTTGTTTATATTTTCTCTCAAGTCATTGATCAACTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGCTTGTTTATATTTTCTCTCAAGTCATTGATCAACTTTAC  50

seq1  CACAAAACCCGTAGGAAGGAACCAAACTGAAGCCATTTTGAGTAAAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACCCGTAGGAAGGAACCAAACTGAAGCCATTTTGAGTAAAGCTT  100

seq1  CCATTTTGAATAGGGGTCAAATAAAGTTTAAGTTTCCAAGACCTCCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGAATAGGGGTCAAATAAAGTTTAAGTTTCCAAGACCTCCCTAG  150

seq1  GTAACTGACATCCTGGTTGGCAGAGAAACACCTGTATGTGAATAACTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGACATCCTGGTTGGCAGAGAAACACCTGTATGTGAATAACTGAC  200

seq1  ATGCTGGCTGGCAAGTTGAGACATGAATGCTAGACAAGTAATCCTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCTGGCAAGTTGAGACATGAATGCTAGACAAGTAATCCTAGCCA  250

seq1  AGTCACCTCACCAACCAATGAGAACAAGATAAATGTACCACATAGTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTCACCAACCAATGAGAACAAGATAAATGTACCACATAGTGAAA  300

seq1  TGTTCCTAAGAAAGTCCCCCTTTCCTAAATCCTGATTGGTGGAAAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAAGAAAGTCCCCCTTTCCTAAATCCTGATTGGTGGAAAAAATG  350

seq1  TAACTGTAACTTAGCATCGATGTTTGTGGTTTTCAAGTCTCTGGGTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTAACTTAGCATCGATGTTTGTGGTTTTCAAGTCTCTGGGTCAGC  400

seq1  CTCCATGTCTGTTCTATGTCCCTGATCTATCAGTAGTGGCTTGATTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTCTGTTCTATGTCCCTGATCTATCAGTAGTGGCTTGATTACAA  450

seq1  TAAATCTTTGTTGTCTCTTGATCTGGTGTTTGAGTCATGTTGGATCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTGTTGTCTCTTGATCTGGTGTTTGAGTCATGTTGGATCTAAG  500

seq1  CAGATGCCATAAAAAAAAAAACCTTTGAAATCTTTATCTGAAATCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCATAAAAAAAAAAACCTTTGAAATCTTTATCTGAAATCTTTCT  550

seq1  TACTTCAGCATCTTTCATTTTAGGAACTGAGGAGTTAAGAACTTTTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGCATCTTTCATTTTAGGAACTGAGGAGTTAAGAACTTTTGTAG  600

seq1  GCACCACATTACCTTTCCTTTTCTAGGCTCTGCATTTCTGGGTTACAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACATTACCTTTCCTTTTCTAGGCTCTGCATTTCTGGGTTACAGTC  650

seq1  TATGCGTCTGTTGGTTAGTAAAGGCTTCTGGATTCTGGCAGTAGACATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGTCTGTTGGTTAGTAAAGGCTTCTGGATTCTGGCAGTAGACATGT  700

seq1  AATCTCTTCAATAACACTCAACGAGGAAGAAATAAACTCCTGTGCCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTCAATAACACTCAACGAGGAAGAAATAAACTCCTGTGCCAGCA  750

seq1  ACATCAACAAACAACATATGGAAATACACTTATGGTGATGTATTTATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACAAACAACATATGGAAATACACTTATGGTGATGTATTTATATG  800

seq1  TGTATGTATGCCTGTGTATGTGTATGTATACACATCTGTGTCTATGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGCCTGTGTATGTGTATGTATACACATCTGTGTCTATGTGTG  850

seq1  TGTGTGAGGTGTAGGGGTG  869
      |||||||||||||||||||
seq2  TGTGTGAGGTGTAGGGGTG  869

seq1: chr4_100344979_100346152
seq2: B6Ng01-105N14.g_70_1241 (reverse)

seq1  GAGGA-AGAATGTAAAGTCTGTCTTTCGGAGTCTGGCTTACTTCTCA-TT  48
      ||||| ||||| ||||||||||| ||||||||  |||| |||| ||| ||
seq2  GAGGAGAGAAT-TAAAGTCTGTC-TTCGGAGTTAGGCTAACTT-TCATTT  47

seq1  AGC-AAGATGATCCATCCTTTTT-CCACAGATGAC-AGAGCTTCATTCTT  95
      ||| ||||||||||||||||||| ||||||||||| ||||| ||||||||
seq2  AGCAAAGATGATCCATCCTTTTTCCCACAGATGACAAGAGC-TCATTCTT  96

seq1  CTTTACGGCTGAGTAAAACCCCATTGTGTATGTATCAGCGTATGTGCTTG  145
      |||||||||||||| |||||||||||||||| ||||||||||||||| ||
seq2  CTTTACGGCTGAGT-AAACCCCATTGTGTAT-TATCAGCGTATGTGC-TG  143

seq1  CT-CCTCTGGCAGAAAGGACTTGGCAGCTGTGATTTGATTAGGGATCTTG  194
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCCCTCTGGCAGAAAGGAC-TGGCAGCTGTGATTTGATTAGGGATCTTG  192

seq1  AGATAGAGGCATTATCTCAGGTCACATGGGTGGGCCC-TAATATGGATGA  243
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  AGATAGAGGCA-TATCTCAGGTCACATGGGTGGGCCCTTAATATGGATGA  241

seq1  GACATTTGACAAGAGAAGAGAGAAGGCAATGTGAACAAGAAGTAGAGACT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGACAAGAGAAGAGAGAAGGCAATGTGAACAAGAAGTAGAGACT  291

seq1  AGAGTGATGCTGAAAAACTCTTAAGGCCAAAGCCAATGAGGATATAAGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATGCTGAAAAACTCTTAAGGCCAAAGCCAATGAGGATATAAGGA  341

seq1  CTAAAAGAACAGCCAATATTTTTGACCATGTCCCTACATTGATCAGACCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAACAGCCAATATTTTTGACCATGTCCCTACATTGATCAGACCT  391

seq1  GAGGAGATAATGGGACACTTCTCAGAGGGTTCTGTGACTCTATTAAGGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATAATGGGACACTTCTCAGAGGGTTCTGTGACTCTATTAAGGCA  441

seq1  ACTGTCCTCTTGATTAGAGAAGCCATAGGGGCCCCAGAGGTTGGGTTCTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTCTTGATTAGAGAAGCCATAGGGGCCCCAGAGGTTGGGTTCTG  491

seq1  CAGTAACTCGTCTGTCTTTCAGTTTCTCTCTATATTGAAAACTCTTTTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTCGTCTGTCTTTCAGTTTCTCTCTATATTGAAAACTCTTTTTA  541

seq1  AAACTCACCCTCCATTGTTCATGAAATTCATTCTTTGGGTTTATAGGGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACCCTCCATTGTTCATGAAATTCATTCTTTGGGTTTATAGGGTA  591

seq1  AAGAATCCAAAAGTCATTGGCTCAGTGCAGCCTTTGGTGACTGGATGCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCAAAAGTCATTGGCTCAGTGCAGCCTTTGGTGACTGGATGCTG  641

seq1  GCACCTTACCTCCTAGGTTAAACCTACCAAAGATGAGACCATGCCCATCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTACCTCCTAGGTTAAACCTACCAAAGATGAGACCATGCCCATCC  691

seq1  TTCAAAAAAGATCCCAGCCTCCAGAATGCAGGGTAATTGAGGCACAGGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAGATCCCAGCCTCCAGAATGCAGGGTAATTGAGGCACAGGAA  741

seq1  GTTAATGCAACCACAGAATGGCACTGCTTCGCAGAGAATGGCAGGGCCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGCAACCACAGAATGGCACTGCTTCGCAGAGAATGGCAGGGCCTG  791

seq1  GCACAGTTTGGAAGCTGGTGGAGAGAGAGCTCAAGGCCACAGAACTCTGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTTTGGAAGCTGGTGGAGAGAGAGCTCAAGGCCACAGAACTCTGC  841

seq1  CATTCCACTCAGCACTCAGCTCACACCTCAGGCCTCTCACCCCTCTAGGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCACTCAGCACTCAGCTCACACCTCAGGCCTCTCACCCCTCTAGGC  891

seq1  TCCCTGTGATCTCTCATTAACACAGTTGCCTCTGCTCCCTCTAGTCCTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGATCTCTCATTAACACAGTTGCCTCTGCTCCCTCTAGTCCTCT  941

seq1  TTGGGGGCTCTGTAATTTAATAACTCTTGGTGGTCCTTGTTTTTTTATTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCTCTGTAATTTAATAACTCTTGGTGGTCCTTGTTTTTTTATTA  991

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTACTCCTGATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTACTCCTGATTT  1041

seq1  GTGAAGTTGTTTGAGGTGGGGCATCGCTGCTCTACATTTTTTTTTTTTTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTGTTTGAGGTGGGGCATCGCTGCTCTACATTTTTTTTTTTTTT  1091

seq1  GAAAAGCTGGGGAAGGAGCAGCTTATAAAGAGATGCTTAAGTCCCACCAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGGGGAAGGAGCAGCTTATAAAGAGATGCTTAAGTCCCACCAT  1141

seq1  CCCTGGCTACCAATTCTTTTCTCTGGAATTC  1174
      |||||||||||||||||||||||||||||||
seq2  CCCTGGCTACCAATTCTTTTCTCTGGAATTC  1172