BAC Information

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BAC

Clone NameB6Ng01-106B01
Chromosome3 (Build37)4 (Build37)
Map Location 79,442,465 - 79,443,00358,178,613 - 58,178,866
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106B01.bB6Ng01-106B01.g
ACCDH913909DH913910
length993254
definitionDH913909|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B01, 5' end.DH913910|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,442,465 - 79,443,003)(58,178,613 - 58,178,866)
sequence
gaattctttgttcagttctgagccccattttttaaggcggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaaagctttaggtcaggcattgtgatttcaccagaggttctt
ttatccttgagaagagtttttgctatcctcggttttttgttattccagat
gaatttgcaaattgctccttctaattcgttgaagaattgagttggaattt
taatggggattgcattgaatctgtagattgctttttggcaagatagccat
ttttacaatgttgggtcctgccatatccatgagcatgggagatctttccc
atctttcttgagatcttctttaatttctgtcttcaggggacttgaagttt
ttttcatacatgtcttcacctccttcgtgagagtcacgccgagaatattt
tatattattggtggtattgagaagggtgtgtttccctattttc
tctataactgtttcctcttttgcaaataaggaaaatgagtagtcaaaatc
atgatgagtggcacgctggtgtggtacataccatttctagaacatcaaca
ttcacttgtcccttagcaggacatgcccaagaaactgcttgcaagcagct
ttccaccactgtctgaaaacgttctgcaggggacactgcgtcagactgtt
ggtggtgtgcactttattagaagaattattagtggtgtgtggtggtttaa
gtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79442465_79443003
seq2: B6Ng01-106B01.b_497_1041 (reverse)

seq1  GAAATTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATATAAAATA  50
      |||| ||||||||| ||||||||||||||| |||| ||||||||||||||
seq2  GAAAATAGGGAAAC-ACACCCTTCTCAATA-CCACCAATAATATAAAATA  48

seq1  -TCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAAC  99
       ||||||||||||||| |||||||| ||| ||||  ||||||| ||||||
seq2  TTCTCGGCGTGACTCTCACGAAGGAGGTG-AAGACATGTATGAAAAAAAC  97

seq1  TTCAAGT-CCCTGAAGAAAGAAATTAAAGAAGATCTCA--GAAGAT-GGA  145
      ||||||| ||||||||| ||||||||||||||||||||   ||||| |||
seq2  TTCAAGTCCCCTGAAGACAGAAATTAAAGAAGATCTCAAGAAAGATGGGA  147

seq1  AAGATCTCCCATGCTCATGGAT-TGGCAGGA-CCAACATTGTAAAAATGG  193
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AAGATCTCCCATGCTCATGGATATGGCAGGACCCAACATTGTAAAAATGG  197

seq1  CTATCTTGCC-AAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAAT  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGCCAAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAAT  247

seq1  TCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCT  297

seq1  GGAATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGA  347

seq1  ACCTCTGGTGGAATCACCATGCCTGACCTAAAGC-TTTACTACAGAGCAA  391
      |||||||||| |||||| |||||||||||||||| |||||||||||||||
seq2  ACCTCTGGTGAAATCACAATGCCTGACCTAAAGCTTTTACTACAGAGCAA  397

seq1  TTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAA  447

seq1  TGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTT  497

seq1  GATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCAT  545

seq1: chr4_58178613_58178866
seq2: B6Ng01-106B01.g_67_320

seq1  TCTAGAACTGTTTCCTCTTTTGCAAATAAGGAAAATGAGTAGTCAAAATC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACTGTTTCCTCTTTTGCAAATAAGGAAAATGAGTAGTCAAAATC  50

seq1  ATGATGAGTGGCACGCTGGTGTGGCACAGACCATTTCTAGAACATCAACA  100
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  ATGATGAGTGGCACGCTGGTGTGGTACATACCATTTCTAGAACATCAACA  100

seq1  TTCACATGTCCCTTAGCAGGACATGCCCAAGAAACTGCTTGCAAGCAGCT  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGTCCCTTAGCAGGACATGCCCAAGAAACTGCTTGCAAGCAGCT  150

seq1  TTCCACCACTGTCTGAAAACGTTCTGCAGGGGACACTGCGTCAGACTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCACTGTCTGAAAACGTTCTGCAGGGGACACTGCGTCAGACTGTT  200

seq1  GGTGGTGTGCACTTTATTAGAAGAATTATTAGTGGTGTGTGGTGGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGTGCACTTTATTAGAAGAATTATTAGTGGTGTGTGGTGGTTTAA  250

seq1  GTGA  254
      ||||
seq2  GTGA  254