BAC Information

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BAC

Clone NameB6Ng01-106D03
Chromosome4 (Build37)
Map Location 6,200,887 - 6,366,342
singlet/doubletdoublet
Overlap geneCyp7a1, Sdcbp, Nsmaf
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik
Downstream geneLOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106D03.bB6Ng01-106D03.g
ACCDH914006DH914007
length1,198822
definitionDH914006|Mus musculus domesticus DNA, BAC clone: B6Ng01-106D03, 5' end.DH914007|Mus musculus domesticus DNA, BAC clone: B6Ng01-106D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,200,887 - 6,202,097)(6,365,523 - 6,366,342)
sequence
gaattcaagaggattggatccgaacttcagagcacagcccaggtatggaa
tcaacccgttgtccaaaggaggttcacctactttcctgtaagacgcagat
ttgggaggttgggaaaattacgtgttcagtgttttctagtacttatttca
tatgtagcttcataactacagtttgtagatacttattttggtgatgggga
cccctctcttttactaaaacagtggcttttttagtgtactaagatattgg
tgagggtgattactaaatctatccactcacgaatctatctattaacccat
ccatcagtctatccacctccatatatatatatatacacacacacgtgtgt
gtgtgtgtattcacacattcatcaagaacccaataaattgttttctatgc
ctatgtcctattgcttttcccaatggcagagcttagagtgttaacatagc
caacaagattcttgctctcgaagtatcacctaatgattaaacttttctaa
gaatcatttccctaaatgcctataatgtaacatttgctctttttctttaa
ggatgggaaacatcaaatgacagaaagggctacagtgttaaagttttaac
aatctacagaatttaaaatactagcatcctgaggactggaggtgtggctc
aatggtggagctcttgataacatttataaaaccttccctttgatcctcaa
ctctggaaaaaagaacattattattctgagatgatatttgaagtgaatag
gaatctcatttggaaaattagatcattataaaatgaaattggatcaagta
aacattggcaaaccatgaactaaaatccaatactctttttactctttctt
aaatgtttattaaaattataagcttatttattttcccaataaattatata
tttagtgttttctactatttatttcaagcttcctaaactacagtttgtag
acacttcttttgatgatggggaccctgcttttttattaaaacagtgggtt
ttttagcctattaagatattggtggaggatatctcttcatctcttctacg
attaattgagtttatgatatttctttcttagcatgacgatagctttttat
taactggtaactatcagcgaagagcaagaaacctttttaaactatggaaa
cacatactggtttacctctgtagtatatgccagggtattgtcccattt

gaattcctaaaaaatgaataaaaatgttatgttataaaacaaagaagaga
agagaaaaggaaagagaaaaggaaagaaaaggaaagagaaaagaaaagaa
ggaaagaagaaaggaaggaagaggtgcttctttaaagacttatatggaag
tgtctctggttataggctgtatgtagaccagcagggctaaggagaggttc
atacaagaagcaaacataaccacatattgacaaatgctaaaatcccatga
ttagtatatgggtgggctttttctattttatttgcatatacttagaaatt
ttatactattaaaaagttttactcttgggtatgttcacatattaaaagca
aatggacgtaataacatgaaaaatgtaaaatttcaaaactctttgagaaa
gcagagttgtaagctgaactgtggcccctgtttgttagccctgttcatcc
gttcagtggtgtattgagtagtgaaggtaaccaggaagttccagcaaacg
tcctccacacaagaggagagagtgttgcgctggaagttgggaggatgtcc
tcagactaaacgaccatagttttagtgggatttttgtttgtttggttgtt
tgtttgttttgtttttgacactttagatatgttctaagttatatacagat
agagactcacagatttttttccttagagtctcataaatccttgaatgctc
aggtcttcataaattggtgtagtattagtttgcaaccttctagtatcttc
ctgtttacttaacacatctggtggttatgtggagagcgggtgtgaagatt
ccaaaataacaataatgataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6200887_6202097
seq2: B6Ng01-106D03.b_48_1245

seq1  GAATTCAAGAGGATTGGATCCGAACTTCAGAGCACAGCCCAGGTATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGGATTGGATCCGAACTTCAGAGCACAGCCCAGGTATGGAA  50

seq1  TCAACCCGTTGTCCAAAGGAGGTTCACCTACTTTCCTGTAAGACGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCGTTGTCCAAAGGAGGTTCACCTACTTTCCTGTAAGACGCAGAT  100

seq1  TTGGGAGGTTGGGAAAATTACGTGTTCAGTGTTTTCTAGTACTTATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGTTGGGAAAATTACGTGTTCAGTGTTTTCTAGTACTTATTTCA  150

seq1  TATGTAGCTTCATAACTACAGTTTGTAGATACTTATTTTGGTGATGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCTTCATAACTACAGTTTGTAGATACTTATTTTGGTGATGGGGA  200

seq1  CCCCTCTCTTTTACTAAAACAGTGGCTTTTTTAGTGTACTAAGATATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTTTTACTAAAACAGTGGCTTTTTTAGTGTACTAAGATATTGG  250

seq1  TGAGGGTGATTACTAAATCTATCCACTCACGAATCTATCTATTAACCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGATTACTAAATCTATCCACTCACGAATCTATCTATTAACCCAT  300

seq1  CCATCAGTCTATCCACCTCCATATATATATATATACACACACACGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTCTATCCACCTCCATATATATATATATACACACACACGTGTGT  350

seq1  GTGTGTGTATTCACACATTCATCAAGAACCCAATAAATTGTTTTCTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATTCACACATTCATCAAGAACCCAATAAATTGTTTTCTATGC  400

seq1  CTATGTCCTATTGCTTTTCCCAATGGCAGAGCTTAGAGTGTTAACATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCTATTGCTTTTCCCAATGGCAGAGCTTAGAGTGTTAACATAGC  450

seq1  CAACAAGATTCTTGCTCTCGAAGTATCACCTAATGATTAAACTTTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGATTCTTGCTCTCGAAGTATCACCTAATGATTAAACTTTTCTAA  500

seq1  GAATCATTTCCCTAAATGCCTATAATGTAACATTTGCTCTTTTTCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTTCCCTAAATGCCTATAATGTAACATTTGCTCTTTTTCTTTAA  550

seq1  GGATGGGAAACATCAAATGACAGAAAGGGCTACAGTGTTAAAGTTTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAAACATCAAATGACAGAAAGGGCTACAGTGTTAAAGTTTTAAC  600

seq1  AATCTACAGAATTTAAAATACTAGCATCCTGAGGACTGGAGGTGTGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAGAATTTAAAATACTAGCATCCTGAGGACTGGAGGTGTGGCTC  650

seq1  AATGGTGGAGCTCTTGATAACATTTATAAAACCTTCCCTTTGATCCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGAGCTCTTGATAACATTTATAAAACCTTCCCTTTGATCCTCAA  700

seq1  CTCTGGAAAAAAGAACATTATTATTCTGAGATGATATTTGAAGTGAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAAAAAGAACATTATTATTCTGAGATGATATTTGAAGTGAATAG  750

seq1  GAATCTCATTTGGAAAATTAGATCATTATAAAATGAAATTGGATCAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCATTTGGAAAATTAGATCATTATAAAATGAAATTGGATCAAGTA  800

seq1  AACATTGGCAAACCATGAACTAAAATCCAATACTC-TTTTACTCTTTCTT  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACATTGGCAAACCATGAACTAAAATCCAATACTCTTTTTACTCTTTCTT  850

seq1  AAATGTTTTATTAAAATTATAAGCTTATTTA-TTTCCCAATAAATTATAT  898
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAATG-TTTATTAAAATTATAAGCTTATTTATTTTCCCAATAAATTATAT  899

seq1  ATTTAGTGTTTTCTACTATTTATTTCAAGCTTCCT-AACTACAGTTTGTA  947
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTAGTGTTTTCTACTATTTATTTCAAGCTTCCTAAACTACAGTTTGTA  949

seq1  GACACTTCTTTTGATGATGGGGACCCTGCTTTTTTATTAAAACAGTGGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACACTTCTTTTGATGATGGGGACCCTGCTTTTTTATTAAAACAGTGGG-  998

seq1  TTTTTTAGCCTATTAAGATATTGGTGAAGAATATCTCTTCATCTCTTCTA  1047
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  TTTTTTAGCCTATTAAGATATTGGTGGAGGATATCTCTTCATCTCTTCTA  1048

seq1  AGAATAATTGAGTATAATTGATATTTCCTTTCTTAGCATGACGATAAGCT  1097
       || ||||||||| ||  |||||||| |||||||||||||||||| ||||
seq2  CGATTAATTGAGTTTA--TGATATTT-CTTTCTTAGCATGACGAT-AGCT  1094

seq1  GTTTAATTTAAACTGGTAACTATCAGCCGAAGAGGCAAAGAAACACTTTT  1147
       ||||   | |||||||||||||||| |||||||   ||||||| |||||
seq2  TTTTA---TTAACTGGTAACTATCAG-CGAAGAG--CAAGAAAC-CTTTT  1137

seq1  TAAACTAAGAGAACACATACTGGTTTACCTCTCTGAAGATAATGCCAGGG  1197
      ||||||| |  |||||||||||||||||  ||||| ||   |||||| ||
seq2  TAAACTATGGAAACACATACTGGTTTAC--CTCTGTAGTATATGCCA-GG  1184

seq1  GTATTGTCCTATTT  1211
      ||||||||| ||||
seq2  GTATTGTCCCATTT  1198


seq1: chr4_6365523_6366342
seq2: B6Ng01-106D03.g_71_892 (reverse)

seq1  ATTATCATTATTGTTATTTT-GAATCTTCACAACCGCTCTCCACATAACC  49
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  ATTATCATTATTGTTATTTTGGAATCTTCACACCCGCTCTCCACATAACC  50

seq1  A-CAGATGTGTTAAGTAAACAGGAAGATACTAGAAGGTTGCAAACTAATA  98
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGTGTTAAGTAAACAGGAAGATACTAGAAGGTTGCAAACTAATA  100

seq1  CTACACCACTTTATGAGGACCTGAGCATTCAAGGATTTATGAGACTCTAA  148
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  CTACACCAATTTATGAAGACCTGAGCATTCAAGGATTTATGAGACTCTAA  150

seq1  GGAAAAAAATCTGTGAGTCTCTATCTGTATATAACTTAGAACATATCTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAATCTGTGAGTCTCTATCTGTATATAACTTAGAACATATCTAA  200

seq1  AGTGTCAAAAACAAAACAAACAAACAACCAAACAAACAAAAATCCCACTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAAAAACAAAACAAACAAACAACCAAACAAACAAAAATCCCACTA  250

seq1  AAACTATGGTCGTTTAGTCTGAGGACATCCTCCCAACTTCCAGCGCAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGGTCGTTTAGTCTGAGGACATCCTCCCAACTTCCAGCGCAACA  300

seq1  CTCTCTCCTCTTGTGTGGAGGACGTTTGCTGGAACTTCCTGGTTACCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTCTTGTGTGGAGGACGTTTGCTGGAACTTCCTGGTTACCTTC  350

seq1  ACTACTCAATACACCACTGAACGGATGAACAGGGCTAACAAACAGGGGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCAATACACCACTGAACGGATGAACAGGGCTAACAAACAGGGGCC  400

seq1  ACAGTTCAGCTTACAACTCTGCTTTCTCAAAGAGTTTTGAAATTTTACAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAGCTTACAACTCTGCTTTCTCAAAGAGTTTTGAAATTTTACAT  450

seq1  TTTTCATGTTATTACGTCCATTTGCTTTTAATATGTGAACATACCCAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTTATTACGTCCATTTGCTTTTAATATGTGAACATACCCAAGA  500

seq1  GTAAAACTTTTTAATAGTATAAAATTTCTAAGTATATGCAAATAAAATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTTTTTAATAGTATAAAATTTCTAAGTATATGCAAATAAAATAG  550

seq1  AAAAAGCCCACCCATATACTAATCATGGGATTTTAGCATTTGTCAATATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCCACCCATATACTAATCATGGGATTTTAGCATTTGTCAATATG  600

seq1  TGGTTATGTTTGCTTCTTGTATGAACCTCTCCTTAGCCCTGCTGGTCTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATGTTTGCTTCTTGTATGAACCTCTCCTTAGCCCTGCTGGTCTAC  650

seq1  ATACAGCCTATAACCAGAGACACTTCCATATAAGTCTTTAAAGAAGCACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCCTATAACCAGAGACACTTCCATATAAGTCTTTAAAGAAGCACC  700

seq1  TCTTCCTTCCTTTCTTCTTTCCTTCTTTTCTTTTCTCTTTCCTTTTCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCCTTTCTTCTTTCCTTCTTTTCTTTTCTCTTTCCTTTTCTTT  750

seq1  CCTTTTCTCTTTCCTTTTCTCTTCTCTTCTTTGTTTTATAACATAACATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTCTTTCCTTTTCTCTTCTCTTCTTTGTTTTATAACATAACATT  800

seq1  TTTATTCATTTTTTAGGAATTC  820
      ||||||||||||||||||||||
seq2  TTTATTCATTTTTTAGGAATTC  822


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