BAC Information

Click to search

BAC

Clone NameB6Ng01-106H17
Chromosome4 (Build37)13 (Build37)
Map Location 69,070,434 - 69,071,60643,504,648 - 43,504,982
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDbc1
Downstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106H17.bB6Ng01-106H17.g
ACCDH914211DH914212
length1,164970
definitionDH914211|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H17, 5' end.DH914212|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,070,434 - 69,071,606)(43,504,648 - 43,504,982)
sequence
gaattccttctgcaaccaacttacagaaggttcttaacttcaaaggaact
caagagggagagtctttggagaggaaatgaagtaaaaacaaaaatagaga
cacaatgttgtcttaaatcccttttccttaggaatctgaacttagaacag
atgtttgcaatgtagtattgaactacaagaataggaagatgatgaactat
tcctgggcattgaagaaagacatgaattgtttggaatgtgcttggtttat
tctgatggtgccaacattctggccatatttagcagatccaaaataaaaac
tgctttggtctcaagagggagaaagttgaaaactgtgccagataatgatg
tttaaaacagtcaaaggtgtatcaccttgtcctgtaagtaatctaattct
aattctaatcttcaaaggatcagaatataagacaaagctgtccaagcata
tctttttccttcaatccctcattcacaaactatctaacatatctacaata
tcatgtgacatgatggagatatgatagtccaatacaaggttacaatttcc
aaaataatcaaggaactacagttatattcattatgataataaaggattag
aaagatgttagaatctatgaatagagaagtaagctagcacagagctgtga
gagtattggggaattctcagaaaataatatgagacctgagactgaagcat
gaatagactcatagggtggtgtcaaagcactctaagccaccatggtagtg
tttagaaaagcactatgttacaaaagaattttatacctttaagaaaaaaa
taaagagagcacgggggtctgcccggcctgagaggtttgtgtcacaggca
ctggcgggagccttcgtggctccgggactccgcggagggcaggctgcacg
ggagaccatgtggaatacagaggccagccgttttctgggacgggcgagag
tcgcagagcttctggagcggcgccattttcggctccagaaaaccggcacc
tttcctggcaggagcacagagcttctgaggcggcgcaatcttcagctcca
gacagccggcaccttctggtgagagcatggggtcctgcccggctgagaag
tttgtgcccagcaccgggcggagcctcctgctccgggacttcgtgaggca
ggctgccaggtgac
gaattcattccaagtacttgagaggcagaggcagacggatttctgagttc
gaggccagcctggtctacagagtgagttccaggacagccagggctataca
gagaagccctgtctccaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaagt
tcatgtagacatatatccattaaatatatatatatatacatatatacata
tatatatacacaataattcaaaataaacatgcattcacttatatatgcat
atatatacatacatgaatacattcatacaaacatactttatttttattct
ttgtccagtttattcttctagatcttagaaagagaatttttggacattgg
gaagctatgatgcacaaaatgcttgaaatgtttggaagacatattctgga
acatatatttagcatctatagtgcactggagttacacttctatttgtcag
caaaatctgatctttacatcttcattgtttctatctatgtttagaggagt
acacccctaagatgcttatctctaacgtgttggcctacctgaaaaaagca
tacacactactgggatccgttttgcttttatccacttatattttattttt
tccagtatgtattatgtatttaataaattttagttgggtttgtcccagtg
accttttctcaccctccaatctctcccaatgaaaccctcttcctgtctgc
aagtgtctctcctattttcaagtgcacattttctgtatgacttatgggat
ttaattgcttacatgatcaaggataggagataattccctgcaacatggac
aacttatcactgaagaaaatgacatcctctctctcagcagccattaattc
caatagtccctcacatggaggccagaagctcctctgcatccatgatgaag
tattgacaggtcctatatttagcaggtttgcaccaagtggacctgagctg
cagtcagtataatgcaacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_69070434_69071606
seq2: B6Ng01-106H17.b_32_1195

seq1  GAATTCCTTCTGCAACCAACTTACAGAAGGTTCTTAACTTCAAAGGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGCAACCAACTTACAGAAGGTTCTTAACTTCAAAGGAACT  50

seq1  CAAGAGGGAGAGTCTTTGGAGAGGAAATGAAGTAAAAACAAAAATAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGGAGAGTCTTTGGAGAGGAAATGAAGTAAAAACAAAAATAGAGA  100

seq1  CACAATGTTGTCTTAAATCCCTTTTCCTTAGGAATCTGAACTTAGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTTGTCTTAAATCCCTTTTCCTTAGGAATCTGAACTTAGAACAG  150

seq1  ATGTTTGCAATGTAGTATTGAACTACAAGAATAGGAAGATGATGAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCAATGTAGTATTGAACTACAAGAATAGGAAGATGATGAACTAT  200

seq1  TCCTGGGCATTGAAGAAAGACATGAATTGTTTGGAATGTGCTTGGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCATTGAAGAAAGACATGAATTGTTTGGAATGTGCTTGGTTTAT  250

seq1  TCTGATGGTGCCAACATTCTGGCCATATTTAGCAGATCCAAAATAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGTGCCAACATTCTGGCCATATTTAGCAGATCCAAAATAAAAAC  300

seq1  TGCTTTGGTCTCAAGAGGGAGAAAGTTGAAAACTGTGCCAGATAATGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTCTCAAGAGGGAGAAAGTTGAAAACTGTGCCAGATAATGATG  350

seq1  TTTAAAACAGTCAAAGGTGTATCACCTTGTCCTGTAAGTAATCTAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAGTCAAAGGTGTATCACCTTGTCCTGTAAGTAATCTAATTCT  400

seq1  AATTCTAATCTTCAAAGGATCAGAATATAAGACAAAGCTGTCCAAGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAATCTTCAAAGGATCAGAATATAAGACAAAGCTGTCCAAGCATA  450

seq1  TCTTTTTCCTTCAATCCCTCATTCACAAACTATCTAACATATCTACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCTTCAATCCCTCATTCACAAACTATCTAACATATCTACAATA  500

seq1  TCATGTGACATGATGGAGATATGATAGTCCAATACAAGGTTACAATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGACATGATGGAGATATGATAGTCCAATACAAGGTTACAATTTCC  550

seq1  AAAATAATCAAGGAACTACAGTTATATTCATTATGATAATAAAGGATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATCAAGGAACTACAGTTATATTCATTATGATAATAAAGGATTAG  600

seq1  AAAGATGTTAGAATCTATGAATAGAGAAGTAAGCTAGCACAGAGCTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTAGAATCTATGAATAGAGAAGTAAGCTAGCACAGAGCTGTGA  650

seq1  GAGTATTGGGGAATTCTCAGAAAATAATATGAGACCTGAGACTGAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTGGGGAATTCTCAGAAAATAATATGAGACCTGAGACTGAAGCAT  700

seq1  GAATAGACTCATAGGGTGGTGTCAAAGCACTCTAAGCCACCATGGTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGACTCATAGGGTGGTGTCAAAGCACTCTAAGCCACCATGGTAGTG  750

seq1  TTTAGAAAAGCACTATGTTACAAAAGAATTTTATACCTTTAAGAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGCACTATGTTACAAAAGAATTTTATACCTTTAAGAAAAAAA  800

seq1  TAAAGAGAGCACGGGGGTCTGCCCGGCCTGAGAGGTTTGTGTCACAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGCACGGGGGTCTGCCCGGCCTGAGAGGTTTGTGTCACAGGCA  850

seq1  CTGGCGGGAGCCTTCGTGGCTCCGGGACTCCGCGGAGGGCAGGCTGCACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGGGAGCCTTCGTGGCTCCGGGACTCCGCGGAGGGCAGGCTGCACG  900

seq1  GGAGACCATGTGGAATACAGAGGCCAGCCG-TTTCTGGGACGGGCGAGAG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAGACCATGTGGAATACAGAGGCCAGCCGTTTTCTGGGACGGGCGAGAG  950

seq1  TCGCAGAGCTTCTGGAGCGGCGCCATCTTCGGCTCCAGAAAACCGGCCAC  999
      |||||||||||||||||||||||||| ||||||||||||||||||||  |
seq2  TCGCAGAGCTTCTGGAGCGGCGCCATTTTCGGCTCCAGAAAACCGGCACC  1000

seq1  CTTCCTGGCAAGAGCCACAGAGCTTCTGAGGCGGCGCCATCTTCAGCTCC  1049
       ||||||||| ||| |||||||||||||||||||||| ||||||||||||
seq2  TTTCCTGGCAGGAG-CACAGAGCTTCTGAGGCGGCGCAATCTTCAGCTCC  1049

seq1  AGACAGCCGGCCACCTTCCTGGTGAGAGCATGGGGT-CTGCCCGGCCTGA  1098
      |||||||||| |||||| |||||||||||||||||| |||||||| ||||
seq2  AGACAGCCGG-CACCTT-CTGGTGAGAGCATGGGGTCCTGCCCGG-CTGA  1096

seq1  GAGGTTTGTGCCACAGGCACCGGCGGGAGCCTTCTTGGCTCCGGGACTCC  1148
      || ||||||||| || |||||||  ||||||| ||  ||||||||||| |
seq2  GAAGTTTGTGCC-CA-GCACCGGGCGGAGCCTCCT--GCTCCGGGACTTC  1142

seq1  GTGGAGGGCAGGCTGCACGGGTGAC  1173
      |||   |||||||||| | ||||||
seq2  GTG--AGGCAGGCTGC-CAGGTGAC  1164

seq1: chr13_43504648_43504982
seq2: B6Ng01-106H17.g_89_591

seq1  GAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGA  50
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGACGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGA  50

seq1  GTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAA  100
      |||||||||||||||||||||||||||||||||| ||||||||  |||||
seq2  GTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAGCCCTGTCTCCAAAAA  100

seq1  CCAAAAAATAAAATAAAATAATAAAA---------AAACATACCTTCCTC  141
      |||||||| |||| |||| || ||||         | |||||  |  |  
seq2  CCAAAAAAAAAAAAAAAAAAAAAAAAAGTTCATGTAGACATA--TATCCA  148

seq1  TTCAAGTGATATACAATTACATGTGTGATCTAGAAGGGTCTCAAAATCCC  191
      || ||   ||||| |  |||||     || || |    | |  | || | 
seq2  TTAAATATATATATATATACAT-----ATATACA----TATATATATACA  189

seq1  CAAGCACTAAAAAAAAA-----ATCAACTCATA-AT-CAAACATAACCCC  234
      |||  | | |||| |||     ||  ||| ||| || || | |||  |  
seq2  CAATAATTCAAAATAAACATGCATTCACTTATATATGCATATATATACAT  239

seq1  AAATAAAGA-----ATAACAAGGAA--TAATTTCAGAACCTCGTCTGCAT  277
      | || || |     |||  ||   |  | ||||     | | |||  || 
seq2  ACATGAATACATTCATACAAACATACTTTATTTTTATTCTTTGTC--CAG  287

seq1  TTCTGTTTTCCTC-ATATCT----CCCAGACTTCTTACAGATT----ACT  318
      ||   | ||| || | ||||       ||| || ||  | |||    |  
seq2  TT---TATTCTTCTAGATCTTAGAAAGAGAATTTTTGGACATTGGGAAGC  334

seq1  TAAGATGCTTA----TCTCTA-----------------------------  335
      || |||||  |     ||  |                             
seq2  TATGATGCACAAAATGCTTGAAATGTTTGGAAGACATATTCTGGAACATA  384

seq1  --------------------------------------------------  335
                                                        
seq2  TATTTAGCATCTATAGTGCACTGGAGTTACACTTCTATTTGTCAGCAAAA  434

seq1  --------------------------------------------------  335
                                                        
seq2  TCTGATCTTTACATCTTCATTGTTTCTATCTATGTTTAGAGGAGTACACC  484

seq1  -------------------  335
                         
seq2  CCTAAGATGCTTATCTCTA  503