BAC Information

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BAC

Clone NameB6Ng01-106H21
Chromosome4 (Build37)
Map Location 34,727,100 - 34,773,118
singlet/doubletdoublet
Overlap geneZfp292
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
Downstream geneCga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106H21.bB6Ng01-106H21.g
ACCDH914217DH914218
length1,0601,180
definitionDH914217|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H21, 5' end.DH914218|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,727,100 - 34,728,153)(34,771,901 - 34,773,118)
sequence
gaattcctgaactagagttaaagacaattgtgaacctgcccagggccagc
cctggaagatcttctttcatgttctggctctccttgagcattagcagtga
taagatttggtcttagaaggcacttagggttactatataataataatacg
ttttcctatctcaattataagtcactgtgcttcagtagctaacctgcctt
ctgagatcttctgaggtgagcaactgttttgcacctcatcctaaaacagg
aggagattaagtaaagtggcctttgttctatctccagcaggaactgcaca
gctttaactttcatcctgctagttgaagtcacaggaagaaaaaagggaca
ctttggaaagtgatttgagcatttatttctaagttgtaaaaagtttccga
tgaaagctttctgagaaaaagggggaaacaggcttgtaaaaaggggggta
ggtgggtaagggatctaggaaaaaggcaggatgtaaaaaagtgggacaaa
gagaattgctaagagaagtgagacaaggagaactgctcccttctctttat
cctcagcacttatttacatctttcagaatacatgatcccatggtaaaaag
ttcagcacaagtttacacaaaattcaaaccataaatcgaataagtttaca
acagagaatgtttacatgcatatccattagtagtaattatctggctaaac
attcgtcacctgccacagctacacaggttcatggagagttaaaaaccata
acttaagttattagtgaagctttgtatagataaactcagtcaatatttca
ttttctgttctagcacttataacaaattgtcaattctctttatatgacct
ttggttaatggttttacagtcttttaaaaataactgagaattccaacttt
ttttttattttattttttttttaaagatttatttatttattataatgtaa
agtacactgtagctgtcttcagacacacagaggagtgcggtcaggatctc
gttacggatgggttggtgagccaccatggtggttgctgggatttggactt
ccagaccttt
gaattccagtgaagagcctcacacatacatatgggcagcgctcagtggac
tctggactggttggttagtttgtcttttaagacatgaagaaattagagaa
ggttgatgaaggtagtcatgcttatatttcattgtataccagtctgaatt
gccaagagtagagtacctttctgtttggtggacttggtactttaaaggga
atgctgaaacctaagatggagtgcacagtcatcagtagactgagaagcct
gtaattagagttcagaagcatggttgcctcgggtgattgtcacatgaggg
taaggattgtgtgtaatagctgtgtgctttttcctgtgattgcaaaatga
agaagctagatggtacagatttggactaagatgataaataagcctcttgg
atatggtgagaatattagaaaaccagaatggtttcttcagtctgtaagct
ggagggagtaaaacataggcttcagtcttggaccttattctattagttta
cacgttgactagtctgtaactatttctctttaccgattcttttattttca
cagacaatttgcatttttcaatcaccatatatgagagcaaatctaatccc
aaaactttcctattagttgaaaatgagaatttaattaagaaataaaattt
cttaagatatcttctgaagtgtgtttggcaacaaatgcagaatgagtttt
gtagacagtaggaggcagtaatcagtaaatgccgtgtagtctctgcacaa
atcaagtttgcctaggagaaccgtctaagattacggttgttagattacct
ttgaacttagtttttagtctcaaaactgtttcctagatgtctaaatgacc
aggccttgaaatatgcaattcatattcccttcttgctataattatctaga
gttaagtagcagtagcctggcctactctgagatatataccagaaatattc
tctctgggattctaggcgtttcttttattaacatataaaattactgttta
ttttgttttatctcttgtataatatggtcactagtcctctgtgtcctcca
acaaggaaactatagtcataggaccaattttagttgtgttaattgataat
ctgtgaagtcatttttagaaaaatacctttggaaattgtttaagaacgtt
ttgacctttctgtcatatgaggaaagtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34727100_34728153
seq2: B6Ng01-106H21.b_30_1089

seq1  GAATTCCTGAACTAGAGTTAAAGACAATTGTGAACCTGCCCAGGGCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAACTAGAGTTAAAGACAATTGTGAACCTGCCCAGGGCCAGC  50

seq1  CCTGGAAGATCTTCTTTCATGTTCTGGCTCTCCTTGAGCATTAGCAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGATCTTCTTTCATGTTCTGGCTCTCCTTGAGCATTAGCAGTGA  100

seq1  TAAGATTTGGTCTTAGAAGGCACTTAGGGTTACTATATAATAATAATACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTGGTCTTAGAAGGCACTTAGGGTTACTATATAATAATAATACG  150

seq1  TTTTCCTATCTCAATTATAAGTCACTGTGCTTCAGTAGCTAACCTGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATCTCAATTATAAGTCACTGTGCTTCAGTAGCTAACCTGCCTT  200

seq1  CTGAGATCTTCTGAGGTGAGCAACTGTTTTGCACCTCATCCTAAAACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCTTCTGAGGTGAGCAACTGTTTTGCACCTCATCCTAAAACAGG  250

seq1  AGGAGATTAAGTAAAGTGGCCTTTGTTCTATCTCCAGCAGGAACTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTAAGTAAAGTGGCCTTTGTTCTATCTCCAGCAGGAACTGCACA  300

seq1  GCTTTAACTTTCATCCTGCTAGTTGAAGTCACAGGAAGAAAAAAGGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAACTTTCATCCTGCTAGTTGAAGTCACAGGAAGAAAAAAGGGACA  350

seq1  CTTTGGAAAGTGATTTGAGCATTTATTTCTAAGTTGTAAAAAGTTTCCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAAGTGATTTGAGCATTTATTTCTAAGTTGTAAAAAGTTTCCGA  400

seq1  TGAAAGCTTTCTGAGAAAAAGGGGGAAACAGGCTTGTAAAAAGGGGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTTTCTGAGAAAAAGGGGGAAACAGGCTTGTAAAAAGGGGGGTA  450

seq1  GGTGGGTAAGGGATCTAGGAAAAAGGCAGGATGTAAAAAAGTGGGACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTAAGGGATCTAGGAAAAAGGCAGGATGTAAAAAAGTGGGACAAA  500

seq1  GAGAATTGCTAAGAGAAGTGAGACAAGGAGAACTGCTCCCTTCTCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGCTAAGAGAAGTGAGACAAGGAGAACTGCTCCCTTCTCTTTAT  550

seq1  CCTCAGCACTTATTTACATCTTTCAGAATACATGATCCCATGGTAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCACTTATTTACATCTTTCAGAATACATGATCCCATGGTAAAAAG  600

seq1  TTCAGCACAAGTTTACACAAAATTCAAACCATAAATCGAATAAGTTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACAAGTTTACACAAAATTCAAACCATAAATCGAATAAGTTTACA  650

seq1  ACAGAGAATGTTTACATGCATATCCATTAGTAGTAATTATCTGGCTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAATGTTTACATGCATATCCATTAGTAGTAATTATCTGGCTAAAC  700

seq1  ATTCGTCACCTGCCACAGCTACACAGGTTCATGGAGAGTTAAAAACCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTCACCTGCCACAGCTACACAGGTTCATGGAGAGTTAAAAACCATA  750

seq1  ACTTAAGTTATTAGTGAAGCTTTGTATAGATAAACTCAGTCAATATTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTTATTAGTGAAGCTTTGTATAGATAAACTCAGTCAATATTTCA  800

seq1  TTTTCTGTTCTAGCACTTATAACAAATTGTCAATTCTCTTTATATGACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTCTAGCACTTATAACAAATTGTCAATTCTCTTTATATGACCT  850

seq1  TTGGTTAATGGTTTTACAGTCTTTTAAAAATAACTGAGAATTCCAACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGGTTAATGGTTTTACAGTCTTTTAAAAATAACTGAGAATTCCAAC-TT  899

seq1  TTTTTTTATTTTATTTTTTTTTTAAAGATTTATTTATTTATTAT-ATGT-  948
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  TTTTTTTATTTTATTTTTTTTTTAAAGATTTATTTATTTATTATAATGTA  949

seq1  AAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGC-GTCA-GATC  996
      |||||||||||||||||||||||||||| |||| ||| || |||| ||||
seq2  AAGTACACTGTAGCTGTCTTCAGACACA-CAGAGGAGTGCGGTCAGGATC  998

seq1  TCGTTACGGATGG--TTGTGAGCCACCAT-GTGGTTGCTGGGATTTGAAC  1043
      |||||||||||||  | |||||||||||| ||||||||||||||||| ||
seq2  TCGTTACGGATGGGTTGGTGAGCCACCATGGTGGTTGCTGGGATTTGGAC  1048

seq1  -TCCAGACCTTT  1054
       |||||||||||
seq2  TTCCAGACCTTT  1060

seq1: chr4_34771901_34773118
seq2: B6Ng01-106H21.g_66_1245 (reverse)

seq1  AAAACATTTTCCTCATATGGGACAAGAAACAGTTTCAAATACACTTCTTA  50
      |||||  |||||||||||  ||| |||||     ||||| ||  ||||| 
seq2  AAAAC--TTTCCTCATAT--GAC-AGAAA---GGTCAAA-AC-GTTCTT-  39

seq1  AAACAATATTACAAAAGTAATATATTTCTAAAAAAATGGACTTTCCACAG  100
      ||||||| || |||| |   ||| ||||||||||    |||||  |||||
seq2  AAACAAT-TTCCAAAGG---TATTTTTCTAAAAA---TGACTT--CACAG  80

seq1  GATTTATCCATATACACAAACCTAAAATTTGGTCACTATGACTGATAGTT  150
         ||||| ||  ||||||  |||||| |||||| |||||||| |||| |
seq2  --ATTATCAATTAACACAA--CTAAAA-TTGGTC-CTATGACT-ATAG-T  122

seq1  TTCCTTGGTTGGAGGACACAGAGAACTTAGTGAACCATATTTATTAACAA  200
      |||||| |||||||||||||||| || ||||| |||||| ||||  ||||
seq2  TTCCTT-GTTGGAGGACACAGAGGAC-TAGTG-ACCATA-TTAT--ACAA  166

seq1  GAAGATAAAAACAAAATAAAACAGTTAATTTTATATGTTTAATAAAAGAA  250
      | |||| |||||||||| |||||| |||||||||||| ||||||||||||
seq2  G-AGAT-AAAACAAAAT-AAACAG-TAATTTTATATG-TTAATAAAAGAA  211

seq1  ACGCCTAGAATCCCCAGAGAGAATATTTCTGGTATATATCTCAGAGTAGG  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTAGAAT-CCCAGAGAGAATATTTCTGGTATATATCTCAGAGTAGG  260

seq1  CCAGGCTACTGCTACTTAACTCTAGATAATTATAGCAAGAA-GGAATATG  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCAGGCTACTGCTACTTAACTCTAGATAATTATAGCAAGAAGGGAATATG  310

seq1  AATTGCATATTTCAAGGCCTGGTCATTTAGACATCTAGG-AACAGTTTTG  398
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATTGCATATTTCAAGGCCTGGTCATTTAGACATCTAGGAAACAGTTTTG  360

seq1  AGACTAAAAACTAAGTTCAAAGGTAATCTAACAACCGTAATCTTAGACGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAAAACTAAGTTCAAAGGTAATCTAACAACCGTAATCTTAGACGG  410

seq1  TTCTCCTAGGCAAACTTGATTTGTGCAGAGACTACACGGCATTTACTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAGGCAAACTTGATTTGTGCAGAGACTACACGGCATTTACTGAT  460

seq1  TACTGCCTCCTACTGTCTACAAAACTCATTCTGCATTTGTTGCCAAACAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTCCTACTGTCTACAAAACTCATTCTGCATTTGTTGCCAAACAC  510

seq1  ACTTCAGAAGATATCTTAAGAAATTTTATTTCTTAATTAAATTCTCATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAAGATATCTTAAGAAATTTTATTTCTTAATTAAATTCTCATTT  560

seq1  TCAACTAATAGGAAAGTTTTGGGATTAGATTTGCTCTCATATATGGTGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAATAGGAAAGTTTTGGGATTAGATTTGCTCTCATATATGGTGAT  610

seq1  TGAAAAATGCAAATTGTCTGTGAAAATAAAAGAATCGGTAAAGAGAAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGCAAATTGTCTGTGAAAATAAAAGAATCGGTAAAGAGAAATA  660

seq1  GTTACAGACTAGTCAACGTGTAAACTAATAGAATAAGGTCCAAGACTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGACTAGTCAACGTGTAAACTAATAGAATAAGGTCCAAGACTGAA  710

seq1  GCCTATGTTTTACTCCCTCCAGCTTACAGACTGAAGAAACCATTCTGGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGTTTTACTCCCTCCAGCTTACAGACTGAAGAAACCATTCTGGTT  760

seq1  TTCTAATATTCTCACCATATCCAAGAGGCTTATTTATCATCTTAGTCCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATATTCTCACCATATCCAAGAGGCTTATTTATCATCTTAGTCCAA  810

seq1  ATCTGTACCATCTAGCTTCTTCATTTTGCAATCACAGGAAAAAGCACACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACCATCTAGCTTCTTCATTTTGCAATCACAGGAAAAAGCACACA  860

seq1  GCTATTACACACAATCCTTACCCTCATGTGACAATCACCCGAGGCAACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTACACACAATCCTTACCCTCATGTGACAATCACCCGAGGCAACCA  910

seq1  TGCTTCTGAACTCTAATTACAGGCTTCTCAGTCTACTGATGACTGTGCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGAACTCTAATTACAGGCTTCTCAGTCTACTGATGACTGTGCAC  960

seq1  TCCATCTTAGGTTTCAGCATTCCCTTTAAAGTACCAAGTCCACCAAACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTAGGTTTCAGCATTCCCTTTAAAGTACCAAGTCCACCAAACAG  1010

seq1  AAAGGTACTCTACTCTTGGCAATTCAGACTGGTATACAATGAAATATAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACTCTACTCTTGGCAATTCAGACTGGTATACAATGAAATATAAG  1060

seq1  CATGACTACCTTCATCAACCTTCTCTAATTTCTTCATGTCTTAAAAGACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTACCTTCATCAACCTTCTCTAATTTCTTCATGTCTTAAAAGACA  1110

seq1  AACTAACCAACCAGTCCAGAGTCCACTGAGCGCTGCCCATATGTATGTGT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCAACCAGTCCAGAGTCCACTGAGCGCTGCCCATATGTATGTGT  1160

seq1  GAGGCTCTTCACTGGAATTC  1218
      ||||||||||||||||||||
seq2  GAGGCTCTTCACTGGAATTC  1180