BAC Information

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BAC

Clone NameB6Ng01-106J10
Chromosome4 (Build37)2 (Build37)
Map Location 64,313,394 - 64,314,238125,304,089 - 125,304,988
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106J10.bB6Ng01-106J10.g
ACCDH914286DH914287
length1,068891
definitionDH914286|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J10, 5' end.DH914287|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,313,394 - 64,314,238)(125,304,089 - 125,304,988)
sequence
gaattccggtaggctttggggagagacaaagcgtgcatcccagtgagtgt
gcatgtgcttcatgccatgtctggttaagagcacacatcttctattcaca
ttttaacagctaggaagcactatctattttaatagtggtgttgtttcata
gttggtttcttcttcttaatgtacaaatgggcctacaaccatgcagtcac
aggtgtcttagatctgttaaagtgtgtgtgtgtgtgtgtgtgagtgagtg
acctacaagaaacctaaatctaaataaaatgaatagatatcaatatatga
taaaatgtacttattatgtaagccatttgagccagccctttctgtcattg
gtaaccaagaacacattaacacatacagatccattcacatcttgctcttg
ataaaattaaatgaatatttgaaaaagttgcaattgtagaatttactcca
tcttacaacaaagtaaaacctagttagtctaagataatcagaatgacctc
attccttttgctggtatttggattatatatatcacattttatgtttatgg
ccaaagaaatgtgcaactacccttgaaaacttgtggaaaagtttcttcat
gctactttttgaatatagcatttgttattgaaagaaaattctgaaatcta
tacagaactccactaaatggaacccagtgccatttcttacttttaataga
agacaaatactcactcaaatataatattaatgtgttgggggtgagatgtt
tagacaggctgtagggagccaggctagaaagcaacttacatagtggagac
agccaaaaagatttgtaaagaacacaagtctttggctcatcaatgaatgt
aaaattaatgacctacacaaacctaaattaaataaattgaatagatatca
ttaggataaattactatatggtaagcattaagccagcccttctggcattg
gtaccaatacacataacacttacaaaagctagccaccattgtatcatttc
cacatgcttgttctggaaaatgtatgaaataggtttttttttcctaaatt
caacagaaaggagggaat
gaattcccaggaactaggaggaaaggactctactgccaagctcctttaca
aaaccctgaatcccaccatccctaccccactagtaaatttttttctttat
tcttggtgtgtggacatgcatgtgattaaacaagatctctctgtatagtc
ctggctggcatggacagacgagggtatcctcaaactcacagagatccaac
cttctctgcctcccaagtgctaggattaaagtgcataacaccttgcctgg
gtttttatagagacatggtctcactaagtaccccaagctgacctcaagct
cttgatcctcctgcctcagctcctggagttctgagatggtggtgtgtact
gacatagccagtcctgactttgaccattaaaataagtcactgcctttgct
ctttgtccaagagttagacctgccctttccctcaagtttaatgtaggtgg
tttgaggaggcccaggcacattacagccaaacatggagaaattaaaatga
ggaagtgagcaatgagaagcccttgttcaaaatcccattagcatgattac
aggcctctatgcagccaggatcagcacgtgcatacagcacactactgtaa
tcaaagagtccccatggctccattctgtaaatttagaaatgctctaaagg
aaatccctgattaaagaagggcagtgctttggaaagttattgtgtccccc
aatgggattcagaaaaataggaaactcttatctccagaatgctgagctgt
gacacattcatagtattcagtagcaagtatgcacgaaagacactatagcc
tttgagtgagtgacaggttatcatttacttaccaacaatacactgatttc
accagaaaggtttccatcaagacaacagtctgtattataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_64313394_64314238
seq2: B6Ng01-106J10.b_291_1110

seq1  TGACCTACAAGAAACCTAAATCTAAATAAAATGAATAGATATCAATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTACAAGAAACCTAAATCTAAATAAAATGAATAGATATCAATATAT  50

seq1  GATAAAATGTACTTATTATGTAAGCCATTTGAGCCAGCCCTTTCTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATGTACTTATTATGTAAGCCATTTGAGCCAGCCCTTTCTGTCAT  100

seq1  TGGTAACCAAGAACACATTAACACATACAGATCCATTCACATCTTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACCAAGAACACATTAACACATACAGATCCATTCACATCTTGCTCT  150

seq1  TGATAAAATTAAATGAATATTTGAAAAAGTTGCAATTGTAGAATTTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAATTAAATGAATATTTGAAAAAGTTGCAATTGTAGAATTTACTC  200

seq1  CATCTTACAACAAAGTAAAACCTAGTTAGTCTAAGATAATCAGAATGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACAACAAAGTAAAACCTAGTTAGTCTAAGATAATCAGAATGACC  250

seq1  TCATTCCTTTTGCTGGTATTTGGATTATATATATCACATTTTATGTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTTTGCTGGTATTTGGATTATATATATCACATTTTATGTTTAT  300

seq1  GGCCAAAGAAATGTGCAACTACCCTTGAAAACTTGTGGAAAAGTTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGAAATGTGCAACTACCCTTGAAAACTTGTGGAAAAGTTTCTTC  350

seq1  ATGCTACTTTTTGAATATAGCATTTGTTATTGAAAGAAAATTCTGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTTTTTGAATATAGCATTTGTTATTGAAAGAAAATTCTGAAATC  400

seq1  TATACAGAACTCCACTAAATGGAACCCAGTGCCATTTCTTACTTTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAACTCCACTAAATGGAACCCAGTGCCATTTCTTACTTTTAATA  450

seq1  GTAAGACAAATACTCACTCAAATATAATATTAATGTGTT-GGGGTGAGAT  499
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  G-AAGACAAATACTCACTCAAATATAATATTAATGTGTTGGGGGTGAGAT  499

seq1  GTTTAGACAGGCTGTAGGGAGCCAGGCTTAGAAGCAAACTTACATAGTGG  549
      ||||||||||||||||||||||||||| |||||   ||||||||||||||
seq2  GTTTAGACAGGCTGTAGGGAGCCAGGC-TAGAAAGCAACTTACATAGTGG  548

seq1  AGACAGCCAAAAAAGATTTTGTAAAGAACACAAGTCTTTGGCTCATCAAT  599
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  AGACAGCC-AAAAAGA-TTTGTAAAGAACACAAGTCTTTGGCTCATCAAT  596

seq1  GAAATGTAAAATTAAATGACCTACAACAAACCTAAATCTAAATAAAATGA  649
      | ||||||||||| |||||||||| |||||||||||| |||||||| |||
seq2  G-AATGTAAAATT-AATGACCTAC-ACAAACCTAAAT-TAAATAAATTGA  642

seq1  ATAGATATCAATATATGATAAAATTTACTTATTATGTAAGCCATTTAAGC  699
      ||||||||||   || ||||||  |||| |||   ||||||   ||||||
seq2  ATAGATATCA--TTAGGATAAA--TTAC-TATATGGTAAGC--ATTAAGC  685

seq1  CAGCCCTTTCTGTCATTGGTAACCAAGAACACATTAACACATACAAAAGC  749
      |||||| ||||| ||||||| |||||  ||||| |||||| |||||||||
seq2  CAGCCC-TTCTGGCATTGGT-ACCAA-TACACA-TAACACTTACAAAAGC  731

seq1  TAGCCACACATGTATCATTTTCCCACATTGCTGCTCATGAAAAATG-ATG  798
      |||||||   ||||||||||  ||||| ||||  |  || |||||| |||
seq2  TAGCCACCATTGTATCATTT--CCACA-TGCTTGTTCTGGAAAATGTATG  778

seq1  AAATAGGTTTTTTTTTTCCAGAAATTCAAACATGGAAGGGAGGGAAT  845
      ||||||||||||||||  |  |||||| ||||  ||| |||||||||
seq2  AAATAGGTTTTTTTTT--CCTAAATTC-AACA--GAAAGGAGGGAAT  820

seq1: chr2_125304089_125304988
seq2: B6Ng01-106J10.g_66_956

seq1  GAATTCCAAAGAACTAGGAGGAAAGGACTCTACTGCCAAGCTCCTTTACA  50
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGAACTAGGAGGAAAGGACTCTACTGCCAAGCTCCTTTACA  50

seq1  AAACCCTGAATCCCACCATCCCTACCCCACTAGTAAATTTTTTTCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGAATCCCACCATCCCTACCCCACTAGTAAATTTTTTTCTTTAT  100

seq1  TCTTGGTGTGTGGACATGCATGTGATTAAACAAGATCTCTCTGTATAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGTGTGGACATGCATGTGATTAAACAAGATCTCTCTGTATAGTC  150

seq1  CTGGCTGGCATGGACAGACGAGGCTATCCTCAAACTCACAGAGATCCAAC  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGGCTGGCATGGACAGACGAGGGTATCCTCAAACTCACAGAGATCCAAC  200

seq1  CTTCTCTGCCTCCCAAGTGCTAGGATTAAAGTGCATAACACCTTGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCCTCCCAAGTGCTAGGATTAAAGTGCATAACACCTTGCCTGG  250

seq1  GTTTTTATAGAGACATGGTCTCACTAAGTAGCCCAAGCTGACCTCAAGCT  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTTTTATAGAGACATGGTCTCACTAAGTACCCCAAGCTGACCTCAAGCT  300

seq1  CTTGATCCTCCTGCCTCAGCTCCTGGAGTTCTGAGATGGTGGTGTGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCCTCCTGCCTCAGCTCCTGGAGTTCTGAGATGGTGGTGTGTACT  350

seq1  GACATAGCCAGTCGTGACTTTGACCATTAAAATAAGTCACTGCCTTTGCT  400
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GACATAGCCAGTCCTGACTTTGACCATTAAAATAAGTCACTGCCTTTGCT  400

seq1  CTTTGTCCAAGAGTTAGACCTGCCCTTTCCCTCAAGTTTAATGTAGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCAAGAGTTAGACCTGCCCTTTCCCTCAAGTTTAATGTAGGTGG  450

seq1  TTTGAGGAGGCCCAGGCACATTACAGCCAAACAGGGAGAAATTAAAACGA  500
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  TTTGAGGAGGCCCAGGCACATTACAGCCAAACATGGAGAAATTAAAATGA  500

seq1  GGAAGTGAGCAATGAGAAGCCCTTGTTCAAAATCCCATTAGCATGATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGAGCAATGAGAAGCCCTTGTTCAAAATCCCATTAGCATGATTAC  550

seq1  AGTCGTCTATGCAGCCAGGAGCAGCACGTGCAAACAGCACACAACTGTAA  600
      || | ||||||||||||||| ||||||||||| ||||||||| |||||||
seq2  AGGCCTCTATGCAGCCAGGATCAGCACGTGCATACAGCACACTACTGTAA  600

seq1  TCAAAGAGTCCCCATGGCTCCATTCTGTAGATTTAGAAATGTTCTAAAGG  650
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  TCAAAGAGTCCCCATGGCTCCATTCTGTAAATTTAGAAATGCTCTAAAGG  650

seq1  AAATCCCTGATTAAAGAAGGGCAGTGCTTTGGAAAGTTATTGTGTTCCCC  700
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATCCCTGATTAAAGAAGGGCAGTGCTTTGGAAAGTTATTGTG-TCCCC  699

seq1  AAATGGGATTCAGAAAAAATAGGAAACTCTTATCTCCAGAAGGCTGAGCT  750
       |||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  CAATGGGATTCAG-AAAAATAGGAAACTCTTATCTCCAGAATGCTGAGCT  748

seq1  GTAAACACATTCATAGTATTCAGTAGCAAGTATGCAACGAAAGCCACGAT  800
      ||  ||||||||||||||||||||||||||||||| ||||||| ||| ||
seq2  GT-GACACATTCATAGTATTCAGTAGCAAGTATGC-ACGAAAGACACTAT  796

seq1  AGCATTTGAGTGAGTGACAGGTTATCCATTTACTTACGAACAATACACTG  850
      ||| ||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  AGCCTTTGAGTGAGTGACAGGTTAT-CATTTACTTACCAACAATACACTG  845

seq1  ATTTCCACCAGGTAAGGTTTTCCATCCAGGACAACAGTATGCATTATAAC  900
      |||| ||||||  || | ||||||| || ||||||||| || ||||||||
seq2  ATTT-CACCAG--AAAGGTTTCCAT-CAAGACAACAGTCTGTATTATAAC  891