BAC Information

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BAC

Clone NameB6Ng01-106K05
Chromosome4 (Build37)
Map Location 17,960,166 - 18,084,851
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106K05.bB6Ng01-106K05.g
ACCDH914321DH914322
length1,2371,126
definitionDH914321|Mus musculus domesticus DNA, BAC clone: B6Ng01-106K05, 5' end.DH914322|Mus musculus domesticus DNA, BAC clone: B6Ng01-106K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,083,588 - 18,084,851)(17,960,166 - 17,961,169)
sequence
gaattctttccctgtagggtagacctaaaaatccaaccagcaagtattca
tagcatctatgtcactatttcactattggacacattttgccttagacata
ttgatatttttttgtaaataatgtctgcaatgaagaaagatttttggcaa
catttctccatcattagccaacatagtacctcccagaactatgaaagttg
gccagtcacaaggaagtttccagttcaaattcaggttgagtttttcatat
ccgtttccaaagaagattgtgtcttcagcaatattttgttaacatctagc
tctggtgggcaaacaacaccagtaaagatgagctgtattgataaaaggca
ggtagatcaggcattggcttttgatttttgtttattaaacttctagtatc
tttctccattcactcagggtagatttgatcaaatactttaaccacaattt
tagaatttacagataaaggctgtggaaagaattttcacatccatcttact
gagtatcaccttcatcttttgcaatgtaaagtcactgaaattttcataat
tgtatctggcccacaacactttgcaaactgatttgcacccttgattcttt
acaagtatttacctacattcataaatatgtgaaacagttggaaaccttgc
taccttcagttttgagtgttatgaaggaggacccttgcctgctttattct
ttgttctttcattcttgattgcaaatcattgagatcttttaaagcatcta
cttactaccctgcaaagatgatcttttactatggtgttcagcaaaaatat
gaaagtctctaggtctctgatgaattaacttgtgtcttaactctcaatta
gcactgtcttatctatcccagtgaatagggaatcaaaaactgctactctt
gtgcccagtatgcttactgttgagtagagagggaggtaaagttgactaaa
taattttgagaaagaaattcataaatgcaaaccagtaaaattatccatga
tcctctgactctgtatagtgtttagtgtttgttttcttgtctttttttaa
actctgagatcatattgcttataacttttctatgggactcacttccagat
caatgactgttcttcacaccagtaatattctgggtcgcttttgtaacact
aaggagtgcccacgcttcctaatttctgtgacagtctgacttagattcct
cccagctgagctgctctccaggggtggacttcgctca
gaattcctgcaggatgcctttgggcaacaactcattgacatgtaaccctg
ccctgctagtgaaagctttatttagtggaaagaaaagaccagtttggact
ctgtctctccattatttattgattacatttagattcccttcatatatgtg
tgtaacttcgtaagcttttactatattatgttttcataccatctctcaaa
tggctcttaattttatccgtctctttcaatattctttcctttgtatcttt
atcttcctcctcccacttgattccctcattccacacaccctcatccatga
ataactattttcatttccattggaatctgttggtcctcctcctgcaaaac
acacaccccagtttcttactctatccttatcctctctgtctctatgtgtt
acagcttgattatcatttacataatagctattatccacttaaaattgaat
acattctatatttgtgtttctgtgtctgatttacctcattaaggattatt
ttatctcgctccatccatttactcagcaaatttcagaattttatttctct
caatggctgaataatattccattgtgcaaatgggctatgctttcattatc
tgtctttcttctgttggacatctagattttttattttattttattttttt
tgcttagacattctgtgttctaggcagatgaaattttaaaataattattt
tcagggtataaaatagccgctgtagatattaagtgacagaaactgcagtt
acctgaactgacctgcacaagacttgtcagtcatatttagggaagaagta
tatacactcctattccttcctgctgaactatttcattattctagatgctg
gaggacagacactctttttctttaattgtatatccactggagaacccgta
gctaaaagaaatagttccacacccgtggctatacagataccgtccttaac
tcagtggtacttcacaaaagtattaatgtgggacagatatttatatgaga
ggcatgtgattagaggtagaaaaagaagaaatgtgatgcagcagtatcac
agtgattatatacatgtgtaagcatgaatagtacttaagtttttatgatg
tgcaattccagttttactaagaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18083588_18084851
seq2: B6Ng01-106K05.b_55_1284 (reverse)

seq1  TGAGCGGGAAGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGGGGGAGGG  50
      |||||  |||| |||||||||| |  |||||   ||| ||||||    ||
seq2  TGAGC--GAAG-TCCACCCCTG-GAGAGCAG--CTCA-GCTGGG---AGG  40

seq1  AGACTAAAGTCAGGACTGTCACAGAAAAATTAAGGAAGCTGTTGGCTACT  100
      |  || |||||| ||||||||||||||   | ||||||| || ||| |||
seq2  AATCT-AAGTCA-GACTGTCACAGAAA---TTAGGAAGC-GTGGGC-ACT  83

seq1  CCTATGATGTACAAAAGCAGCACAAGAATATTTACTGGTGTTGAAGAACA  150
      |||  |   ||||||||| |  | |||||| ||||||||| |||||||||
seq2  CCTTAGTGTTACAAAAGC-GACCCAGAATA-TTACTGGTG-TGAAGAACA  130

seq1  GTCATCTGATCCTGGGAGTGAAGTCCCATAGAAAAGTTTATAAGCAATAT  200
      ||||| |||| |||| |||| ||||||||||||||| |||||||||||||
seq2  GTCAT-TGAT-CTGGAAGTG-AGTCCCATAGAAAAG-TTATAAGCAATAT  176

seq1  GATCTCAGAGTTTTAAAAACATGACAAGAAAAACAAACACTAAAACACTA  250
      |||||||||||||  |||| | |||||| |||||||||||| ||||||||
seq2  GATCTCAGAGTTT--AAAAAAAGACAAG-AAAACAAACACT-AAACACTA  222

seq1  TACAGAGGTCAGAGGATCATGGATAATTTTTACTGGTTTTGCATTTTATG  300
      |||||| ||||||||||||||||||| ||||||||| |||||| ||||||
seq2  TACAGA-GTCAGAGGATCATGGATAA-TTTTACTGG-TTTGCA-TTTATG  268

seq1  AATTTCTTTTCTCAAAATTATTTAGTCAACTTTTACCTCCCTCTCTACTC  350
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  AATTTC-TTTCTCAAAATTATTTAGTCAAC-TTTACCTCCCTCTCTACTC  316

seq1  AACAGTAAGCATACTGGGCACAAGAGTAGCAGTTTTTGATTCCCTATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAGCATACTGGGCACAAGAGTAGCAGTTTTTGATTCCCTATTCA  366

seq1  CTGGGATAGATAAGACAGTGCTAATTGAGAGTTAAGACACAAGTTAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATAGATAAGACAGTGCTAATTGAGAGTTAAGACACAAGTTAATTC  416

seq1  ATCAGAGACCTAGAGACTTTCATATTTTTGCTGAACACCATAGTAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGACCTAGAGACTTTCATATTTTTGCTGAACACCATAGTAAAAGA  466

seq1  TCATCTTTGCAGGGTAGTAAGTAGATGCTTTAAAAGATCTCAATGATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTGCAGGGTAGTAAGTAGATGCTTTAAAAGATCTCAATGATTTG  516

seq1  CAATCAAGAATGAAAGAACAAAGAATAAAGCAGGCAAGGGTCCTCCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGAATGAAAGAACAAAGAATAAAGCAGGCAAGGGTCCTCCTTCA  566

seq1  TAACACTCAAAACTGAAGGTAGCAAGGTTTCCAACTGTTTCACATATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTCAAAACTGAAGGTAGCAAGGTTTCCAACTGTTTCACATATTTA  616

seq1  TGAATGTAGGTAAATACTTGTAAAGAATCAAGGGTGCAAATCAGTTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAGGTAAATACTTGTAAAGAATCAAGGGTGCAAATCAGTTTGCA  666

seq1  AAGTGTTGTGGGCCAGATACAATTATGAAAATTTCAGTGACTTTACATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGTGGGCCAGATACAATTATGAAAATTTCAGTGACTTTACATTG  716

seq1  CAAAAGATGAAGGTGATACTCAGTAAGATGGATGTGAAAATTCTTTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATGAAGGTGATACTCAGTAAGATGGATGTGAAAATTCTTTCCAC  766

seq1  AGCCTTTATCTGTAAATTCTAAAATTGTGGTTAAAGTATTTGATCAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTATCTGTAAATTCTAAAATTGTGGTTAAAGTATTTGATCAAATC  816

seq1  TACCCTGAGTGAATGGAGAAAGATACTAGAAGTTTAATAAACAAAAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGAGTGAATGGAGAAAGATACTAGAAGTTTAATAAACAAAAATCA  866

seq1  AAAGCCAATGCCTGATCTACCTGCCTTTTATCAATACAGCTCATCTTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAATGCCTGATCTACCTGCCTTTTATCAATACAGCTCATCTTTAC  916

seq1  TGGTGTTGTTTGCCCACCAGAGCTAGATGTTAACAAAATATTGCTGAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGTTTGCCCACCAGAGCTAGATGTTAACAAAATATTGCTGAAGA  966

seq1  CACAATCTTCTTTGGAAACGGATATGAAAAACTCAACCTGAATTTGAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCTTCTTTGGAAACGGATATGAAAAACTCAACCTGAATTTGAACT  1016

seq1  GGAAACTTCCTTGTGACTGGCCAACTTTCATAGTTCTGGGAGGTACTATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTCCTTGTGACTGGCCAACTTTCATAGTTCTGGGAGGTACTATG  1066

seq1  TTGGCTAATGATGGAGAAATGTTGCCAAAAATCTTTCTTCATTGCAGACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAATGATGGAGAAATGTTGCCAAAAATCTTTCTTCATTGCAGACA  1116

seq1  TTATTTACAAAAAAATATCAATATGTCTAAGGCAAAATGTGTCCAATAGT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACAAAAAAATATCAATATGTCTAAGGCAAAATGTGTCCAATAGT  1166

seq1  GAAATAGTGACATAGATGCTATGAATACTTGCTGGTTGGATTTTTAGGTC  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTGACATAGATGCTATGAATACTTGCTGGTTGGATTTTTAGGTC  1216

seq1  TACCCTACAGGGAA  1264
      ||||||||||||||
seq2  TACCCTACAGGGAA  1230

seq1: chr4_17960166_17961169
seq2: B6Ng01-106K05.g_222_1194

seq1  AACTTCGTAAGCTTTTACTATATTATGTTTTCATACCATCTCTCAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCGTAAGCTTTTACTATATTATGTTTTCATACCATCTCTCAAATGG  50

seq1  CTCTTAATTTTATCCGTCTCTTTCAATATTCTTTCCTTTGTATCTTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATTTTATCCGTCTCTTTCAATATTCTTTCCTTTGTATCTTTATC  100

seq1  TTCCTCCTCCCACTTGATTCCCTCATTCCACACACCCTCATCCATGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCCCACTTGATTCCCTCATTCCACACACCCTCATCCATGAATA  150

seq1  ACTATTTTCATTTCCATTGGAATCTGTTGGTCCTCCTCCTGCAAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTCATTTCCATTGGAATCTGTTGGTCCTCCTCCTGCAAAACACA  200

seq1  CACCCCAGTTTCTTACTCTATCCTTATCCTCTCTGTCTCTATGTGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGTTTCTTACTCTATCCTTATCCTCTCTGTCTCTATGTGTTACA  250

seq1  GCTTGATTATCATTTACATAATAGCTATTATCCACTTAAAATTGAATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTATCATTTACATAATAGCTATTATCCACTTAAAATTGAATACA  300

seq1  TTCTATATTTGTGTTTCTGTGTCTGATTTACCTCATTAAGGATTATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATTTGTGTTTCTGTGTCTGATTTACCTCATTAAGGATTATTTTA  350

seq1  TCTCGCTCCATCCATTTACTCAGCAAATTTCAGAATTTTATTTCTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCTCCATCCATTTACTCAGCAAATTTCAGAATTTTATTTCTCTCAA  400

seq1  TGGCTGAATAATATTCCATTGTGCAAATGGGCTATGCTTTCATTATCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATAATATTCCATTGTGCAAATGGGCTATGCTTTCATTATCTGT  450

seq1  CTTTCTTCTGTTGGACATCTAGATTTTTTATTTTATTTTATTTTTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTGTTGGACATCTAGATTTTTTATTTTATTTTATTTTTTTTGC  500

seq1  TTAGACATTCTGTGTTCTAGGCAGATGAAATTTTAAAATAATTATTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATTCTGTGTTCTAGGCAGATGAAATTTTAAAATAATTATTTTCA  550

seq1  GGGTATAAAATAGCCGCTGTAGATATTAAGTGACAGAAACTGCAGTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAAAATAGCCGCTGTAGATATTAAGTGACAGAAACTGCAGTTACC  600

seq1  TGAACTTGACCTGCACAAGACTTGTCAGTCATATTTAGGGAAGAAGTATA  650
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAC-TGACCTGCACAAGACTTGTCAGTCATATTTAGGGAAGAAGTATA  649

seq1  TACACTCCTATTCCTTCCTGCTGAACTATTTCATTATTCTAGATGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCCTATTCCTTCCTGCTGAACTATTTCATTATTCTAGATGCTGGA  699

seq1  GGACAGACACTCTTTTTCTTTAATTGTATATCCACTGGAGAACCCGTAGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGACAGACACTCTTTTTCTTTAATTGTATATCCACTGGAGAACCCGTA-G  748

seq1  CTAAAAGAAATAGTTCCACACCCGTGGCTATACAGATACCGTCCTTAACC  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTAAAAGAAATAGTTCCACACCCGTGGCTATACAGATACCGTCCTTAA-C  797

seq1  TCAGTGGGTTACTTCACAAAAGTATTAATGTGGGACAGATATTTATAATG  850
      |||||||  ||||||||||||||||||||||||||||||||||||| |||
seq2  TCAGTGG--TACTTCACAAAAGTATTAATGTGGGACAGATATTTAT-ATG  844

seq1  AAGAGGGCAGGGTTGAATAGAGGTAAGAGAAAGAAGAAATGTGGATGGCA  900
       ||| |||| |  ||| ||||||| ||| ||||||||||||| ||| |||
seq2  -AGA-GGCATG--TGATTAGAGGT-AGAAAAAGAAGAAATGT-GAT-GCA  887

seq1  GCAGTAATCACAGTGAATTATATACATGTGTAAAGGCATTAAAATAGTAC  950
      ||||| ||||||||| |||||||||||||||||  ||||   ||||||||
seq2  GCAGT-ATCACAGTG-ATTATATACATGTGTAA--GCAT--GAATAGTAC  931

seq1  TTTTAAAAGTTTTTAATGAAGGTGGCAAATATTCAAGTATTATACTAAGA  1000
      ||    |||||||| |||| |   |||   |||| ||  || ||||||||
seq2  TT----AAGTTTTT-ATGATG--TGCA---ATTCCAG--TTTTACTAAGA  969

seq1  GGGA  1004
      ||||
seq2  GGGA  973