BAC Information

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BAC

Clone NameB6Ng01-106L04
Chromosome4 (Build37)
Map Location 146,433,823 - 146,551,008
singlet/doubletdoublet
Overlap geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657
Upstream geneLOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L04.bB6Ng01-106L04.g
ACCDH914361DH914362
length1,1801,145
definitionDH914361|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L04, 5' end.DH914362|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,549,800 - 146,551,008)(146,433,823 - 146,434,981)
sequence
gaattcaacagtaagtttattcttacccccaaataacagattattgtaat
tctccaacatcacatccatgtacaatgtcctctgagcaaaactgagagat
tcccattcctccagtgagaagtccaaggccacgtccttgaaggttaacag
accctgtaatggaaaactacctatttgatactggacaaaaatgcttttca
gccaggcgtggtggtgcacgccttcaatcccagcacttgggaggtagagg
cgggtggatttctgagttcgaggccagtctggtctacaaagtgagttcca
ggacagacagggctacaactctcgaacccccccctccccaaaaaaaaagc
ttttctgcaggaagcgggtgtggccgcatgggccaagttgtttactgcct
tgcctgagcatgcacagtgtggctgcatgcgtgggctgcctgccaggctg
gactattccttgtgatccggacctgtcagccgacctgagctggagcgtgt
gtgaattctgattggatgaggtggggtggagctagatgagatccaaagat
gcaaggataggagttttgttttttagcccttgccctaagtagaagctagt
tgtagtaagagaagctgttgtaaggggagttttataagaaaagctgcaag
aaggagaacaagtaaagaagctgttgtgtgaacccaacttggtatccgtg
tccatgtcgttcctgtctccgtgggcgcagaggacagcagcacttttcta
ctttataaaaagaagtaattaagataccttttttgatgcagatgaggttg
aaggataattgttttctaaaagtgttatggagatgtgtctgaaaatacaa
attgctgctcttacactgaccaaaaagaatgtagatcatagaaaataagc
cctttagataacattctacatatagagattaaaacttttggatgacttga
ataaaaagagatttttaaaaaagaaatgtggaaaggacactgacctgtgt
gtattaccagacacaccctcattcttgttgctgtccttctccaggtctct
gtgagaacaagatgatccttcttgaattcagaccaaggtctgaatattca
agatgaataaatccaccccttccggaaatgctaacccgttatacttaaaa
aaatagccaaatgttacgggaatcttgaca
gaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaat
gctttactaataaaggcagactgagaattaatcagataatttatacattt
aaaaaaacccttacaagtattttgtatgtgataaatgcagtacccacaac
atcagtctgacaaatcaacagatatttcaaacagtagagcaacattataa
atgaaatgaatgagatagtcctttaacaagaaatatcatcttaaaattca
ctggagaattcttccaaaagggaaacttttcaaatacattgacggtttga
atcctttattttggcctatctcttagaatgtaatagataatttatacagg
caagaatcttaacaaatataatatatgctgaaatatctttgacttcattt
cagtgcagaaaaaatatgtaaaaaaaatttttatgggaaaaatagttctc
ctggggaaatgtggcatatgttttacacgggtaatattcttttcaacagt
cagtgctctaaactagagaattattatgaatctgaaaacttttgaaaacc
ttcatgcaatgttcaaatcttagataatgtcaactattatgctggcagta
actctgaatatatgatagtgaagaaacattttcattaaacttttacttgt
tcaccctcaaatattatatgatgaagtcaggtgtgaaagccagaagaata
tgatgttgtgcaacaattcatggagatagaaatgatccattccaaaagga
aactaaataaagtgtactatcgccttcaaaatgtctaataaaactggcag
cattttgtatatttaattcaaatgaagaaattgacacagattgtagttga
tagtgtatttgacaaactgagccaccaagactgcatgttcttaatcctat
aatatgcctacagatgtgaagtgtgctttgagtatccagtattcattatt
cttatcaccgtcaatgtgacaaatgatttattggtttcacgtttcagata
gtgactgactatgagtcccttatgctctgtcacatctcttctcattgcct
gtaataaagctgatatttacagtgactgcctgttttcagtttgccactta
atagaatgaataatgtgcatcatccgctgaactatttctccataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146549800_146551008
seq2: B6Ng01-106L04.b_44_1223 (reverse)

seq1  TGTCAAGATTCCTGGTATCATTTTGCTTTAATTTTTTTTTTTATGTATAT  50
      ||||||||||||  ||| ||||| ||       | |||||||| ||||| 
seq2  TGTCAAGATTCC-CGTAACATTTGGC-------TATTTTTTTAAGTATA-  41

seq1  AATGTGGTTTAGCATTTTCTGTAATGGTGTTGTATTTATTTCATCTTTGA  100
           || ||||||||| | | |   | | || ||||| |||||| ||||
seq2  ---ACGGGTTAGCATTTCCGGAA---GGGGTGGATTTA-TTCATC-TTGA  83

seq1  ATTATTCAGACCTTGGTCTGAAATTTCAAGAAGAATTCAATCTTTGTTCT  150
      | ||||||||||||||||||||  ||||||||| ||   ||| |||||| 
seq2  A-TATTCAGACCTTGGTCTGAA--TTCAAGAAGGAT--CATC-TTGTTC-  126

seq1  TCACAGAGACCCTGGGAGAAGGACAGCAACAAGAATGAGTGTGTGTCTGG  200
      |||||||||||   ||||||||||||||||||||||||| ||||||||||
seq2  TCACAGAGACC--TGGAGAAGGACAGCAACAAGAATGAGGGTGTGTCTGG  174

seq1  TAAATACACCACAGGTCAGTGTCCTTTCCACATTTCTTTTTTTAAAAATC  250
      | |||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  T-AATACA-CACAGGTCAGTGTCCTTTCCACATTTC-TTTTTTAAAAATC  221

seq1  TCTTTTTATTCAAGTCATCCAAAAGTTTTAATCTCTATATGTAGAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATTCAAGTCATCCAAAAGTTTTAATCTCTATATGTAGAATGTT  271

seq1  ATCTAAAGGGCTTATTTTCTATGATCTACATTCTTTTTGGTCAGTGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAGGGCTTATTTTCTATGATCTACATTCTTTTTGGTCAGTGTAAG  321

seq1  AGCAGCAATTTGTATTTTCAGACACATCTCCATAACACTTTTAGAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAATTTGTATTTTCAGACACATCTCCATAACACTTTTAGAAAACA  371

seq1  ATTATCCTTCAACCTCATCTGCATCAAAAAAGGTATCTTAATTACTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTTCAACCTCATCTGCATCAAAAAAGGTATCTTAATTACTTCTT  421

seq1  TTTATAAAGTAGAAAAGTGCTGCTGTCCTCTGCGCCCACGGAGACAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAGTAGAAAAGTGCTGCTGTCCTCTGCGCCCACGGAGACAGGAA  471

seq1  CGACATGGACACGGATACCAAGTTGGGTTCACACAACAGCTTCTTTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATGGACACGGATACCAAGTTGGGTTCACACAACAGCTTCTTTACTT  521

seq1  GTTCTCCTTCTTGCAGCTTTTCTTATAAAACTCCCCTTACAACAGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTTCTTGCAGCTTTTCTTATAAAACTCCCCTTACAACAGCTTCT  571

seq1  CTTACTACAACTAGCTTCTACTTAGGGCAAGGGCTAAAAAACAAAACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTACAACTAGCTTCTACTTAGGGCAAGGGCTAAAAAACAAAACTCC  621

seq1  TATCCTTGCATCTTTGGATCTCATCTAGCTCCACCCCACCTCATCCAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGCATCTTTGGATCTCATCTAGCTCCACCCCACCTCATCCAATC  671

seq1  AGAATTCACACACGCTCCAGCTCAGGTCGGCTGACAGGTCCGGATCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCACACACGCTCCAGCTCAGGTCGGCTGACAGGTCCGGATCACAA  721

seq1  GGAATAGTCCAGCCTGGCAGGCAGCCCACGCATGCAGCCACACTGTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTCCAGCCTGGCAGGCAGCCCACGCATGCAGCCACACTGTGCAT  771

seq1  GCTCAGGCAAGGCAGTAAACAACTTGGCCCATGCGGCCACACCCGCTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGCAAGGCAGTAAACAACTTGGCCCATGCGGCCACACCCGCTTCC  821

seq1  TGCAGAAAAGCTTTTTTTTTGGGGAGGGGGGGGTTCGAGAGTTGTAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAAGCTTTTTTTTTGGGGAGGGGGGGGTTCGAGAGTTGTAGCCC  871

seq1  TGTCTGTCCTGGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCCTGGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAGAA  921

seq1  ATCCACCCGCCTCTACCTCCCAAGTGCTGGGATTGAAGGCGTGCACCACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCCGCCTCTACCTCCCAAGTGCTGGGATTGAAGGCGTGCACCACC  971

seq1  ACGCCTGGCTGAAAAGCATTTTTGTCCAGTATCAAATAGGTAGTTTTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGGCTGAAAAGCATTTTTGTCCAGTATCAAATAGGTAGTTTTCCA  1021

seq1  TTACAGGGTCTGTTAACCTTCAAGGACGTGGCCTTGGACTTCTCACTGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGTCTGTTAACCTTCAAGGACGTGGCCTTGGACTTCTCACTGGA  1071

seq1  GGAATGGGAATCTCTCAGTTTTGCTCAGAGGACATTGTACATGGATGTGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGGAATCTCTCAGTTTTGCTCAGAGGACATTGTACATGGATGTGA  1121

seq1  TGTTGGAGAATTACAATAATCTGTTATTTGTGGGTAAGAATAAACTTACT  1200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTTGGAGAATTACAATAATCTGTTATTTGGGGGTAAGAATAAACTTACT  1171

seq1  GTTGAATTC  1209
      |||||||||
seq2  GTTGAATTC  1180

seq1: chr4_146433823_146434981
seq2: B6Ng01-106L04.g_68_1212

seq1  GAATTCATACAGTAGAGAAAACTTACAAAAATGCAGTGAATGTGATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTAGAGAAAACTTACAAAAATGCAGTGAATGTGATAAAT  50

seq1  GCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACATTT  100

seq1  AAAAAAACCCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACAAC  150

seq1  ATCAGTCTGACAAATCAACAGATATTTCAAACAGTAGAGCAACATTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTGACAAATCAACAGATATTTCAAACAGTAGAGCAACATTATAA  200

seq1  ATGAAATGAATGAGATAGTCCTTTAACAAGAAATATCATCTTAAAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGAATGAGATAGTCCTTTAACAAGAAATATCATCTTAAAATTCA  250

seq1  CTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGACGGTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGACGGTTTGA  300

seq1  ATCCTTTATTTTGGCCTATCTCTTAGAATGTAATAGATAATTTATACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTATTTTGGCCTATCTCTTAGAATGTAATAGATAATTTATACAGG  350

seq1  CAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTT  400

seq1  CAGTGCAGAAAAAATATGTAAAAAAAATTTTTATGGGAAAAATAGTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGAAAAAATATGTAAAAAAAATTTTTATGGGAAAAATAGTTCTC  450

seq1  CTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAGT  500

seq1  CAGTGCTCTAAACTAGAGAATTATTATGAATCTGAAAACTTTTGAAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCTAAACTAGAGAATTATTATGAATCTGAAAACTTTTGAAAACC  550

seq1  TTCATGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTA  600

seq1  ACTCTGAATATATGATAGTGAAGAAACATTTTCATTAAACTTTTACTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAATATATGATAGTGAAGAAACATTTTCATTAAACTTTTACTTGT  650

seq1  TCACCCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATA  700

seq1  TGATGTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGA  750

seq1  AACTAAATAAAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATAAAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAG  800

seq1  CATTTTGTATATTTAATTCAAATGAAGAAATTGACACAGATTGTAGTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTATATTTAATTCAAATGAAGAAATTGACACAGATTGTAGTTGA  850

seq1  TAGTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTAT  900

seq1  AATATGCCTACAGATGTGAAGTGTGCTTTGAGTATCCAGTATTCATTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCTACAGATGTGAAGTGTGCTTTGAGTATCCAGTATTCATTATT  950

seq1  CTTATCA-CGTCAATGTGACAAATGATTTATTGGTTTCACGTTTCAGGAT  999
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  CTTATCACCGTCAATGTGACAAATGATTTATTGGTTTCACGTTTCA-GAT  999

seq1  AGTGACTGACTATGAGTCCCTTATGCTCTGTCAACATCTCCTTCCTCATT  1049
      |||||||||||||||||||||||||||||||| |||||||  | ||||||
seq2  AGTGACTGACTATGAGTCCCTTATGCTCTGTC-ACATCTC--TTCTCATT  1046

seq1  GCCCTGTAAATAAAGCTGAATATTTTAACAAGGTTGACTTGGCTGTTTTC  1099
      | ||||| |||||||||| ||||||  |||    |||| || ||||||||
seq2  G-CCTGT-AATAAAGCTG-ATATTT--ACA---GTGAC-TGCCTGTTTTC  1087

seq1  AGTTTG-CACTTATAATTAGATGAATAAATGTTGCATCAT-CGCTGGAAC  1147
      |||||| ||||  ||||   |||||| |||| |||||||| |||| ||||
seq2  AGTTTGCCACT--TAATAGAATGAAT-AATG-TGCATCATCCGCT-GAAC  1132

seq1  TATTTCT-CATAA  1159
      ||||||| |||||
seq2  TATTTCTCCATAA  1145