BAC Information

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BAC

Clone NameB6Ng01-107A15
Chromosome4 (Build37)4 (Build37)
Map Location 146,713,018 - 146,713,314145,370,896 - 145,372,131
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107A15.bB6Ng01-107A15.g
ACCDH914615DH914616
length3031,159
definitionDH914615|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A15, 5' end.DH914616|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,713,018 - 146,713,314)(145,370,896 - 145,372,131)
sequence
aatctggtcctccacaagggcagcagagtgtttttaattactgagctgcc
tccccaagcctctaaatcacttcttaaaatgcaggaatgtatataaactc
actggcaacatatcctcagcaacctcagtaaaactgtgatatagctctaa
atgtcacacaggaggagcaatgaaaagtacttacaaaaaaaaaaaaaaaa
aaaaaagactggagcgggacacttagagctagcttcaaagcacaaggccc
tctcctggcctctgcaggtacctgtacttgtgtgtgtgtgtgtgtgtgtg
tgt
gaattcaatcaaatctgcactggtccctatatgacaaatacttacaaagc
tctctcgggatgcctactcagttccctggagaaagggaaatgaaatggca
aatggaggaacaggggagttaagaaagcatgaacgaattttaattaaagg
agctttatgaaggcttttgcaaaggcaaacctcccggtatacaaactcca
gatgcagccaaggatctccgaggatattttagaaaaatattctggcaacc
ataaaattgattaaagcatcaccatgaacccaattcacaggatctcaaac
ttcctgataatggtaagatatccacaacagaattgtgagagtggcggcag
aaaatgtacccctgctccacacacctgcccagctcctgcccatttcccag
tccaacagctcctctgacctagaaggtgacaggatcagctgctgaatatc
ctaggaggagcaacggcagcttaaggaagttttcaggttccgcaaatact
gaattgtgagaatggcggcagaaaaggcacccctgctccacaccgctgcc
cagctcctgccgggttcctagtccaacagctcctctaacctggaagatga
caggaccagctcctggatgtcctaggaggccagcaaaacaactgcttctt
aagaaagttttcaggcaccgcaaatactaggcactagtctccctccatga
cttcctgatcacgaggcagccgagatgcaagaagaaagatgaaaccgcgg
aacttcccttctttctgcctagcgccgccttctggacccgcccaaaattc
aacagcttcctggaattcttctaagcccacctacttatgggccttttaat
taattagcttcccacttcttcacagcaatgtttggtattttgaatttttg
cttgcttgctgcttgcttgctattcgtttctttgcttttaatttgtcttt
tctaaactcatctaatcgtgcagaatcccacactccccatcagacactct
tcaactcttgttgcagctgcttccacacactttcccagactactctgcaa
agcttcttcccaaagtgctgcgactagaacaaagctgatgtagtagacac
tgcactggggttctgaacccttcgaatcattgaatctgttctacctttct
catattgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146713018_146713314
seq2: B6Ng01-107A15.b_48_350

seq1  AATCTGGTCCTCCACAAGGGCAGCAGAGTGTTTTTAATTACTGAGCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGTCCTCCACAAGGGCAGCAGAGTGTTTTTAATTACTGAGCTGCC  50

seq1  TCCCCAAGCCTCTAAATCACTTCTTAAAATGCAGGAATGTATATAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGCCTCTAAATCACTTCTTAAAATGCAGGAATGTATATAAACTC  100

seq1  ACTGGCAGCATATCCTTGGCAATCTCACTAAAACTATGATGTAGCTCTAA  150
      ||||||| ||||||||  |||| |||| ||||||| |||| |||||||||
seq2  ACTGGCAACATATCCTCAGCAACCTCAGTAAAACTGTGATATAGCTCTAA  150

seq1  ATGTCACACAGAAGGAGCAATGAAAAGTACGTAC------AAAAAAAAAA  194
      ||||||||||| |||||||||||||||||| |||      ||||||||||
seq2  ATGTCACACAGGAGGAGCAATGAAAAGTACTTACAAAAAAAAAAAAAAAA  200

seq1  AAAAAAGACTGGAGCGGGACACTTAGAGCTAGCTTCAAAGCACAAGGCCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACTGGAGCGGGACACTTAGAGCTAGCTTCAAAGCACAAGGCCC  250

seq1  TCTCCTGGCCTCTGCAGGTACCTGTACTTGTGTATGTGTGTGTGTGTGTG  294
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCCTGGCCTCTGCAGGTACCTGTACTTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGT  297
      |||
seq2  TGT  303

seq1: chr4_145370896_145372131
seq2: B6Ng01-107A15.g_67_1225 (reverse)

seq1  CACAATATGAG-AAGTTAGACAGGATCCATTGAATCTGAAGGGTTCAGAA  49
      ||||||||||| ||| ||||   ||| || ||| || |||||||||||||
seq2  CACAATATGAGAAAGGTAGAACAGATTCAATGATTC-GAAGGGTTCAGAA  49

seq1  CCCAGGTGCAGTGTCCTACTACATCCAGCTCTGGTCTAGTCTGGCAGCAA  99
      |||  ||||||||| ||||||||| ||||| || |||||||  ||||| |
seq2  CCCCAGTGCAGTGT-CTACTACAT-CAGCTTTGTTCTAGTC--GCAGC-A  94

seq1  CTTTGTGAAGAAGCTTTGCAGAGTAGGTCCTGGGAAGTTGTGTGGAAGGC  149
      ||||| ||||||||||||||||||||   |||||||  ||||||||| ||
seq2  CTTTGGGAAGAAGCTTTGCAGAGTAG--TCTGGGAAAGTGTGTGGAA-GC  141

seq1  AGCCTGCAAC-AGAGTTGGAGGAGTGGTTCCTGATGGGGAGTGTGGGATT  198
      || ||||||| |||||| || |||||    ||||||||||||||||||||
seq2  AG-CTGCAACAAGAGTT-GAAGAGTG---TCTGATGGGGAGTGTGGGATT  186

seq1  CCTGCACGATTAGATGAGTTTAAGAAAAAGACAAATTAAAAGCAAAGAAA  248
       |||||||||||||||||||||   |||||||||||||||||||||||||
seq2  -CTGCACGATTAGATGAGTTTA--GAAAAGACAAATTAAAAGCAAAGAAA  233

seq1  CGAATAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCA  298
      |||||                                             
seq2  CGAAT---------------------------------------------  238

seq1  AGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAAAATTCAAA  348
                      ||||||||||| ||||||||||||||||||||||
seq2  ----------------AGCAAGCAAGC-AGCAAGCAAGCAAAAATTCAAA  271

seq1  ACACCAAACATTGCTGTGAAGAAGTGGGAAGCTAATTAATTAAAAGGCCC  398
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAACATTGCTGTGAAGAAGTGGGAAGCTAATTAATTAAAAGGCCC  321

seq1  ATAAGTAGGTGGGCTTAGAAGAATTCCAGGAAGCTGTTGAATTTTGGGCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGGTGGGCTTAGAAGAATTCCAGGAAGCTGTTGAATTTTGGGCG  371

seq1  GGTCCAGAAGGCGGCGCTAGGCAGAAAGAAGGGAAGTTCCGCGGTTTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGAAGGCGGCGCTAGGCAGAAAGAAGGGAAGTTCCGCGGTTTCAT  421

seq1  CTTTCTTCTTGCATCTCGGCTGCCTCGTGATCAGGAAGTCATGGAGGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTGCATCTCGGCTGCCTCGTGATCAGGAAGTCATGGAGGGAG  471

seq1  ACTAGTGCCTAGTATTTGCGGTGCCTGAAAACTTTCTTAAGAAGCAGTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGCCTAGTATTTGCGGTGCCTGAAAACTTTCTTAAGAAGCAGTTG  521

seq1  TTTTGCTGGCCTCCTAGGACATCCAGGAGCTGGTCCTGTCATCTTCCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGGCCTCCTAGGACATCCAGGAGCTGGTCCTGTCATCTTCCAGG  571

seq1  TTAGAGGAGCTGTTGGACTAGGAACCCGGCAGGAGCTGGGCAGCGGTGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAGCTGTTGGACTAGGAACCCGGCAGGAGCTGGGCAGCGGTGTG  621

seq1  GAGCAGGGGTGCCTTTTCTGCCGCCATTCTCACAATTCAGTATTTGCGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGGTGCCTTTTCTGCCGCCATTCTCACAATTCAGTATTTGCGGA  671

seq1  ACCTGAAAACTTCCTTAAGCTGCCGTTGCTCCTCCTAGGACATTCAGCAG  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCTGAAAACTTCCTTAAGCTGCCGTTGCTCCTCCTAGGATATTCAGCAG  721

seq1  CTGATCCTGTCACCTTCTAGGTCAGAGGAGCTGTTGGACTGGGAAATGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTGTCACCTTCTAGGTCAGAGGAGCTGTTGGACTGGGAAATGGG  771

seq1  CAGGAGCTGGGCAGGTGTGTGGAGCAGGGGTACATTTTCTGCCGCCACTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTGGGCAGGTGTGTGGAGCAGGGGTACATTTTCTGCCGCCACTC  821

seq1  TCACAATTCTGTTGTGGATATCTTACCATTATCAGGAAGTTTGAGATCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTCTGTTGTGGATATCTTACCATTATCAGGAAGTTTGAGATCCT  871

seq1  GTGAATTGGGTTCATGGTGATGCTTTAATCAATTTTATGGTTGCCAGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTGGGTTCATGGTGATGCTTTAATCAATTTTATGGTTGCCAGAAT  921

seq1  ATTTTTCTAAAATATCCTCGGAGATCCTTGGCTGCATCTGGAGTTTGTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTAAAATATCCTCGGAGATCCTTGGCTGCATCTGGAGTTTGTAT  971

seq1  ACCGGGAGGTTTGCCTTTGCAAAAGCCTTCATAAAGCTCCTTTAATTCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCGGGAGGTTTGCCTTTGCAAAAGCCTTCATAAAGCTCCTTTAATTAAA  1021

seq1  ATTCGTTCATTCTTTCTTAACTCCCCTGTTCCTCCATTTGCCATTTCATT  1148
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCATGCTTTCTTAACTCCCCTGTTCCTCCATTTGCCATTTCATT  1071

seq1  TCCCTTTCTCCAGGGAACTGAGTAGGCATTCTGAGAGAGCTTTGTAAGCA  1198
      ||||||||||||||||||||||||||||| | |||||||||||||||| |
seq2  TCCCTTTCTCCAGGGAACTGAGTAGGCATCCCGAGAGAGCTTTGTAAGTA  1121

seq1  TTTGTCATATAGGGACCAGTGCAGATTTGATTGAATTC  1236
      ||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATATAGGGACCAGTGCAGATTTGATTGAATTC  1159