BAC Information

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BAC

Clone NameB6Ng01-107B01
Chromosome4 (Build37)
Map Location 90,746,711 - 90,892,529
singlet/doubletdoublet
Overlap geneLOC664848, LOC100042274
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1, LOC664840
Downstream geneElavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107B01.bB6Ng01-107B01.g
ACCDH914635DH914636
length1,1321,001
definitionDH914635|Mus musculus domesticus DNA, BAC clone: B6Ng01-107B01, 5' end.DH914636|Mus musculus domesticus DNA, BAC clone: B6Ng01-107B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,746,711 - 90,747,877)(90,891,524 - 90,892,529)
sequence
gaattcaggtgcccagatttgaatgcaagtgcctttatcccctgagccgt
gtcattgggtaaaactttggctactttttaaatagaataccttcctacaa
agttgcattctaggacaaaacttgtaaaagacattaagcagatctggttt
ttgctctttaatgtattagttcctcttctcttctttcctagaaagtgttt
taggcctacaagacacatgccacaaacactagtcatgtttctcaatggga
agcactgtaagatgctgaacatgcaaagatgattaagacatacccacggg
gaactaaacaagacaggccaccaaagctagtcagacgacttttgccctga
aattgctggtgctgtgccgtagtgtgccagcttttcggatgttcctcgtt
aatcttccttttctgtgacctgataccctctctcctactcttctgaggcc
gaaccagaacaaaggtcacttggaatggaagcaaagtccggagacgacca
aagacaccaagataaaacttggcaatgccactcgagctcaagattgagag
gcttcctccttaagatcaaaattccagatgatccaaatataggcaacgag
ccccagcagaacatttggctttctgtgctgaatccaggaaagaagcagaa
atcaccatagaagcaactcagttttactctttccaaccctgtgggctcta
tgctaattgcctaccccaacagtgagatcgcatttcaaaatatggtcaaa
cacaaaacagccaagtcaatcaagcattaagtattcaagcacaattatcc
caacacatgctcgagtaccagcagtgaagcagcttaatttgggagcagct
cggtaatcatctctccaggcagctgagattttaacctctcccctcgggcc
tcctgttcaggtgctggcttcgctccctaggtgtgaaagatcacaagggg
acctgctgcttcagtttggacctcattgaaattcacgctaaggcggggag
gaggaatgctgagccccatgtggggagagctgtgggagcgatgtcagact
gtcactcagtctgtgtcgatgctcctgatgccaaggacagggcttcttca
tcaacctctggtcagtggttgctaacgtgagc
gaattccagatcgcctaactcatagtccacattggcagcaatactatgga
gtatcagtttctcttttctctatgtggaccaaaattagccaccaataaag
gaagatttgattcatcagcagtggaacctcagcctgttctaacagctaag
cactttctgaaaccagtgagatcttggaggtgacctcgagatgagcaaag
ccatttgttttgctgggggttttgcatgttttctctgatgtcagaggggc
cagttgggccgtgctgaaggagaaataagactgggtagccttagctccaa
gcaagtaggctagcacactgggggacagttgtgaggatagctcagaccta
actccttgttttttaaaaacagacaaacaagcctatgtcctctagaggct
atctcctggattgaatcagttatcctggccctgaaatgtcatacacaggt
ggcttagacagcaagctttgggtgtctatgcaggtctagagatcattttt
cttgattctttcttggcataggcaagtttttgtacagacagaaacccatt
agccaggggtaagaacaaagcaaagcccagcctgcttctcagaggcaaac
aagcatttcagaatcttcagaggcattctgcaagtggttgtggtaaatat
tctccaataaacatgaatttcacacctggatcaatttttcattggaggaa
acacctgaatgtttttgattgggtcataattttctgaagctgacattttc
ttggaacctatattgctaggtttgaagacctcatgatctaattataaaac
cctataacaagttttgagttgggaattacatcaggttccaggacccctgt
aacactgagtcctagttggtaaggaagtggaatgcaaagaagaaaagccc
ctgtcaaggacctcagactcctgtgtgagttttactgtttctcgctattc
ggttgtgttggaggatagggttagagctccatgcactcagctctttggtt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90746711_90747877
seq2: B6Ng01-107B01.b_44_1175

seq1  GAATTCAGGTGCCCAGATTTGAATGCAAGTGCCTTTATCCCCTGAGCCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGCCCAGATTTGAATGCAAGTGCCTTTATCCCCTGAGCCGT  50

seq1  GTCATTGGGTAAAACTTTGGCTACTTTTTAAATAGAATACCTTCCTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGGTAAAACTTTGGCTACTTTTTAAATAGAATACCTTCCTACAA  100

seq1  AGTTGCATTCTAGGACAAAACTTGTAAAAGACATTAAGCAGATCTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCATTCTAGGACAAAACTTGTAAAAGACATTAAGCAGATCTGGTTT  150

seq1  TTGCTCTTTAATGTATTAGTTCCTCTTCTCTTCTTTCCTAGAAAGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTAATGTATTAGTTCCTCTTCTCTTCTTTCCTAGAAAGTGTTT  200

seq1  TAGGCCTACAAGACACATGCCACAAACACTAGTCATGTTTCTCAATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTACAAGACACATGCCACAAACACTAGTCATGTTTCTCAATGGGA  250

seq1  AGCACTGTAAGATGCTGAACATGCAAAGATGATTAAGACATACCCACGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTAAGATGCTGAACATGCAAAGATGATTAAGACATACCCACGGG  300

seq1  GAACTAAACAAGACAGGCCACCAAAGCTAGTCAGACGACTTTTGCCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAACAAGACAGGCCACCAAAGCTAGTCAGACGACTTTTGCCCTGA  350

seq1  AATTGCTGGTGCTGTGCCGTAGTGTGCCAGCTTTTCGGATGTTCCTCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGGTGCTGTGCCGTAGTGTGCCAGCTTTTCGGATGTTCCTCGTT  400

seq1  AATCTTCCTTTTCTGTGACCTGATACCCTCTCTCCTACTCTTCTGAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCTTTTCTGTGACCTGATACCCTCTCTCCTACTCTTCTGAGGCC  450

seq1  GAACCAGAACAAAGGTCACTTGGAATGGAAGCAAAGTCCGGAGACGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAACAAAGGTCACTTGGAATGGAAGCAAAGTCCGGAGACGACCA  500

seq1  AAGACACCAAGATAAAACTTGGCAATGCCACTCGAGCTCAAGATTGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACCAAGATAAAACTTGGCAATGCCACTCGAGCTCAAGATTGAGAG  550

seq1  GCTTCCTCCTTAAGATCAAAATTCCAGATGATCCAAATATAGGCAACGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCCTTAAGATCAAAATTCCAGATGATCCAAATATAGGCAACGAG  600

seq1  CCCCAGCAGAACATTTGGCTTTCTGTGCTGAATCCAGGAAAGAAGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCAGAACATTTGGCTTTCTGTGCTGAATCCAGGAAAGAAGCAGAA  650

seq1  ATCACCATAGAAGCAACTCAGTTTTACTCTTTCCAACCCTGTGGGCTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATAGAAGCAACTCAGTTTTACTCTTTCCAACCCTGTGGGCTCTA  700

seq1  TGCTAATTGCCTACCCCAACAGTGAGATCGCATTTCAAAATATGGTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATTGCCTACCCCAACAGTGAGATCGCATTTCAAAATATGGTCAAA  750

seq1  CACAAAACAGCCAAGTCAATCAAGCATTAAGTATTCAAGCACAATTATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACAGCCAAGTCAATCAAGCATTAAGTATTCAAGCACAATTATCC  800

seq1  CAACACATGCTCGAGTACCAGCAGTGAAGCAGCTTAATTTGGGAGCAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATGCTCGAGTACCAGCAGTGAAGCAGCTTAATTTGGGAGCAGCT  850

seq1  CGGTAATCATCTCTCCAGGCAGCTGAGATTTTAACCTCTCCCCTCGGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAATCATCTCTCCAGGCAGCTGAGATTTTAACCTCTCCCCTCGGGCC  900

seq1  TCCTGTTCAGGGTGCTGGCTTCGCTCCCTAGGTGTGAAAGATCACAAGGG  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCA-GGTGCTGGCTTCGCTCCCTAGGTGTGAAAGATCACAAGGG  949

seq1  GACCTGCTGCTTCCAGTTTGGGACCTCATTGAAATTCACGCTAAGGGCGG  1000
      |||||||||||| |||||| ||||||||||||||||||||||||||   |
seq2  GACCTGCTGCTT-CAGTTT-GGACCTCATTGAAATTCACGCTAAGG--CG  995

seq1  GGGAGGAGGGATTGCTGAAGCCCCCATTGTTGGGGAGAGCCTGGTGGGAG  1050
      ||||||| ||| ||||||   ||||||   ||||||||||   |||||||
seq2  GGGAGGA-GGAATGCTGA--GCCCCAT--GTGGGGAGAGC--TGTGGGAG  1038

seq1  CAGATGGTCAGACTGGTCACTCAGTCTGGTTGTCAGATGCTCCCTGAAGT  1100
      | ||| |||||||| |||||||||||||  |||| |||||| ||||| | 
seq2  C-GAT-GTCAGACT-GTCACTCAGTCTG--TGTC-GATGCT-CCTGATG-  1080

seq1  GCCCCAGGGACAAGGGGGCTTTCTTTCTACTCAACCCTCTGGTCATGTGT  1150
         ||| |||||   |||| ||||   |  |||| ||||||||||   ||
seq2  ---CCAAGGACA---GGGC-TTCT---TCATCAA-CCTCTGGTCA---GT  1116

seq1  GTTTGCTCAACGTGAGC  1167
      | ||||| |||||||||
seq2  GGTTGCT-AACGTGAGC  1132

seq1: chr4_90891524_90892529
seq2: B6Ng01-107B01.g_64_1064 (reverse)

seq1  GAACCAAAAGAGCTGGAGGTGCATGGAGGCTCTAAACCATCCCTCCAACA  50
      ||||| |||||||||   ||||||||| ||||||| ||   |||||||||
seq2  GAACC-AAAGAGCTG--AGTGCATGGA-GCTCTAACCCTATCCTCCAACA  46

seq1  CAACCGAATAGCGAGAAACAGTAAAACTCACACAGGAGTCTGGGGTCCTT  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAACCGAATAGCGAGAAACAGTAAAACTCACACAGGAGTCTGAGGTCCTT  96

seq1  GACAGGGGC-TTTCTTCTTTGCATTCCACTTCCTTACCAACTAGGACTCA  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGCTTTTCTTCTTTGCATTCCACTTCCTTACCAACTAGGACTCA  146

seq1  GTGTTACAGGGGTCCTGGAACCTGATGTAAATTCCCAACTCAAAACTTGT  199
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGTTACAGGGGTCCTGGAACCTGATGT-AATTCCCAACTCAAAACTTGT  195

seq1  TATAGGGTTTTATAATTTAGATCATGAGGTCTTCAAACCTAGCAATATAG  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATAGGGTTTTATAA-TTAGATCATGAGGTCTTCAAACCTAGCAATATAG  244

seq1  GTTCCAAGAAAATGTCAGCTTCAGAAAATTATGACCCAATCAAAAACATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAGAAAATGTCAGCTTCAGAAAATTATGACCCAATCAAAAACATT  294

seq1  CAGGTGTTTCCTCCAATGAAAAATTGATCCAGGTGTGAAATTCATGTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTTCCTCCAATGAAAAATTGATCCAGGTGTGAAATTCATGTTTA  344

seq1  TTGGAGAATATTTACCACAACCACTTGCAGAATGCCTCTGAAGATTCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAATATTTACCACAACCACTTGCAGAATGCCTCTGAAGATTCTGA  394

seq1  AATGCTTGTTTGCCTCTGAGAAGCAGGCTGGGCTTTGCTTTGTTCTTACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGTTTGCCTCTGAGAAGCAGGCTGGGCTTTGCTTTGTTCTTACC  444

seq1  CCTGGCTAATGGGTTTCTGTCTGTACAAAAACTTGCCTATGCCAAGAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTAATGGGTTTCTGTCTGTACAAAAACTTGCCTATGCCAAGAAAG  494

seq1  AATCAAGAAAAATGATCTCTAGACCTGCATAGACACCCAAAGCTTGCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAAAAATGATCTCTAGACCTGCATAGACACCCAAAGCTTGCTGT  544

seq1  CTAAGCCACCTGTGTATGACATTTCAGGGCCAGGATAACTGATTCAATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCACCTGTGTATGACATTTCAGGGCCAGGATAACTGATTCAATCC  594

seq1  AGGAGATAGCCTCTAGAGGACATAGGCTTGTTTGTCTGTTTTTAAAAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAGCCTCTAGAGGACATAGGCTTGTTTGTCTGTTTTTAAAAAAC  644

seq1  AAGGAGTTAGGTCTGAGCTATCCTCACAACTGTCCCCCAGTGTGCTAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTAGGTCTGAGCTATCCTCACAACTGTCCCCCAGTGTGCTAGCC  694

seq1  TACTTGCTTGGAGCTAAGGCTACCCAGTCTTATTTCTCCTTCAGCACGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTTGGAGCTAAGGCTACCCAGTCTTATTTCTCCTTCAGCACGGC  744

seq1  CCAACTGGCCCCTCTGACATCAGAGAAAACATGCAAAACCCCCAGCAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGGCCCCTCTGACATCAGAGAAAACATGCAAAACCCCCAGCAAAA  794

seq1  CAAATGGCTTTGCTCATCTCGAGGTCACCTCCAAGATCTCACTGGTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCTTTGCTCATCTCGAGGTCACCTCCAAGATCTCACTGGTTTCA  844

seq1  GAAAGTGCTTAGCTGTTAGAACAGGCTGAGGTTCCACTGCTGATGAATCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCTTAGCTGTTAGAACAGGCTGAGGTTCCACTGCTGATGAATCA  894

seq1  AATCTTCCTTTATTGGTGGCTAATTTTGGTCCACATAGAGAAAAGAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCTTTATTGGTGGCTAATTTTGGTCCACATAGAGAAAAGAGAAA  944

seq1  CTGATACTCCATAGTATTGCTGCCAATGTGGACTATGAGTTAGGCGATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACTCCATAGTATTGCTGCCAATGTGGACTATGAGTTAGGCGATCT  994

seq1  GGAATTC  1006
      |||||||
seq2  GGAATTC  1001