BAC Information

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BAC

Clone NameB6Ng01-107E14
Chromosome4 (Build37)
Map Location 121,160,791 - 121,296,980
singlet/doubletdoublet
Overlap geneLOC666927
Upstream geneScmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
Downstream geneLOC666931, LOC666937, LOC633269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107E14.bB6Ng01-107E14.g
ACCDH914793DH914794
length9651,036
definitionDH914793|Mus musculus domesticus DNA, BAC clone: B6Ng01-107E14, 5' end.DH914794|Mus musculus domesticus DNA, BAC clone: B6Ng01-107E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,160,791 - 121,161,581)(121,295,943 - 121,296,980)
sequence
gaattcctgggtgtctgtgtccagttggtcccagttacttctggtgttgg
ggcagatgttgtgtccttttccttaactgatcttatatgaacataaaaat
aatgtaagataatacttgagttcacagatctttttaaaaaggaatttgaa
tgtgtacttcaaaagccattataataaaaatacaagttaatttaaagcaa
gttgtttagtcaatttttaggagcattcccttcagtgttacaataggacc
caagaaaacacagtatagctctcctggagttggtgacacaccaggatggt
attttttagttccatctatttgcctgagaatttcacaaagtcattgtttt
taatagctaagtactaccccactgtataaatgtaccacattttctgtacc
cattcttttgttgagggatatctgggttgtttccagcttctggctattat
aaataagcatactataaacatagtgaaacctgtgtccttgttatatgttg
gaaaatcttttgtgtatatgtgcagtaatggtatagctgggttttcaagt
agaactatctttaattttctgaggaacttctagattgatatctgttggga
actaatgagaggtccctggggaagacagggaagggggggaaggcccatgc
ctcaccagagttccacctatactctggtcaggcaaatgtagaagagctgc
catatgctttccactcagtaccaggaaggcatctaagattctgacccact
cttcagggagtgaacaaggagcagcccaacctgagagccctggagctact
ttcctaaagccccaggtttataggagagagggaagagggaagagagggtc
ccacaccggtgagaagagtgcagtggatcttgactagagcacaggaaggc
cttccatcaggagattaaaaatggctcattaggagaagcctatccgatct
tcaagtgcagtggac
gaattcctcatcttcatggaacatgcctcccagtgatgaaacaaaatcta
cagaaataagggaaacatgtcagacagtgcgggtgcactaaaaacatgca
ctaagcccggaaaaaagatagagtctgaggtgtaagcttgtgcatggaga
gagtaaggttagggcaggattcacctagacaactgagcagagcttagagg
atgagggaatttgccatatgaatgtgtggtcaaaggagaagcagaggcaa
aggtcatgggcctgatatacaccaaaggaaaggatccaggttcttaggct
aaggagtggccaaaatataaggtgttttaaagtgtcagtttagaagctag
gtgtggtggtgaaacaagtattcatgaggatgaggtagatggatctctgt
gcatttgatgtgttaagatatgcctgtcaatgtggttagtttcaggtcat
ccagaatgaggaggtagcagtgggcaagggaagagggaaaagtgttaagg
ttaggtttcatgttggggatcatttagtcccatcttggtcatctgagatt
tctatattatgtgtgacctaggtcctattggtctgtttccaaggaccacc
ctctgctttgagagaggttctgagaaaagaggggtttgggatcaccaaaa
aaaaaaaaaaatggcgtgaaatgaaattgtgaatccaagctgatgacctg
tgttctgcttgatccagcttttcaggtctgcttctctctatgttctactt
tctatcaggaggtttctctgtctatatgatgtttgcttgctaatcaaaaa
gatctctctgttcatgccatgcttgcgtgcatgtgtgtgtgcttgtgtgc
gtacatgtctgcatgcatgcccgtgtgtcttgtctccaacagttcttaaa
aagattcttctgggtacttcatctactgcaaaacacagtgcccgtctctt
atgatacatatcactgcagtcatttaccccaggttttcttttgattttct
aagaaacagcgtccttgacgaggggaccagcaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_121160791_121161581
seq2: B6Ng01-107E14.b_46_836

seq1  GAATTCCTGGGTGTCTGTGTCCAGTTGGTCCCAGTTACTTCTGGTGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGTGTCTGTGTCCAGTTGGTCCCAGTTACTTCTGGTGTTGG  50

seq1  GGCAGATGTTGTGTCCTTTTCCTTAACTGATCTTATATGAACATAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGTTGTGTCCTTTTCCTTAACTGATCTTATATGAACATAAAAAT  100

seq1  AATGTAAGATAATACTTGAGTTCACAGATCTTTTTAAAAAGGAATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGATAATACTTGAGTTCACAGATCTTTTTAAAAAGGAATTTGAA  150

seq1  TGTGTACTTCAAAAGCCATTATAATAAAAATACAAGTTAATTTAAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTTCAAAAGCCATTATAATAAAAATACAAGTTAATTTAAAGCAA  200

seq1  GTTGTTTAGTCAATTTTTAGGAGCATTCCCTTCAGTGTTACAATAGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTAGTCAATTTTTAGGAGCATTCCCTTCAGTGTTACAATAGGACC  250

seq1  CAAGAAAACACAGTATAGCTCTCCTGGAGTTGGTGACACACCAGGATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAACACAGTATAGCTCTCCTGGAGTTGGTGACACACCAGGATGGT  300

seq1  ATTTTTTAGTTCCATCTATTTGCCTGAGAATTTCACAAAGTCATTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAGTTCCATCTATTTGCCTGAGAATTTCACAAAGTCATTGTTTT  350

seq1  TAATAGCTAAGTACTACCCCACTGTATAAATGTACCACATTTTCTGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTAAGTACTACCCCACTGTATAAATGTACCACATTTTCTGTACC  400

seq1  CATTCTTTTGTTGAGGGATATCTGGGTTGTTTCCAGCTTCTGGCTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTGTTGAGGGATATCTGGGTTGTTTCCAGCTTCTGGCTATTAT  450

seq1  AAATAAGCATACTATAAACATAGTGAAACCTGTGTCCTTGTTATATGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCATACTATAAACATAGTGAAACCTGTGTCCTTGTTATATGTTG  500

seq1  GAAAATCTTTTGTGTATATGTGCAGTAATGGTATAGCTGGGTTTTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTTTTGTGTATATGTGCAGTAATGGTATAGCTGGGTTTTCAAGT  550

seq1  AGAACTATCTTTAATTTTCTGAGGAACTTCTAGATTGATATCTGTTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATCTTTAATTTTCTGAGGAACTTCTAGATTGATATCTGTTGGGA  600

seq1  ACTAATGAGAGGTCCCTGGGGAAGACAGGGAAGGGGGGGAAGGCCCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGAGAGGTCCCTGGGGAAGACAGGGAAGGGGGGGAAGGCCCATGC  650

seq1  CTCACCAGAGTTCCACCTATACTCTGGTCAGGCAAATGTAGAAGAGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGAGTTCCACCTATACTCTGGTCAGGCAAATGTAGAAGAGCTGC  700

seq1  CATATGCTTTCCACTCAGTACCAGGAAGGCATCTAAGATTCTGACCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTTTCCACTCAGTACCAGGAAGGCATCTAAGATTCTGACCCACT  750

seq1  CTTCAGGGAGTGAACAAGGAGCAGCCCAACCTGAGAGCCCT  791
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGAGTGAACAAGGAGCAGCCCAACCTGAGAGCCCT  791

seq1: chr4_121295943_121296980
seq2: B6Ng01-107E14.g_68_1103 (reverse)

seq1  TATTTGCT-GTCTCCTCGTCATGGGACGCTGTTTCATAAGAAAATCAAAA  49
      |||||||| ||| ||||||||  |||||||||||| | ||||||||||||
seq2  TATTTGCTGGTCCCCTCGTCA-AGGACGCTGTTTC-TTAGAAAATCAAAA  48

seq1  GGAAAACCTGGGGTAAATGACTGCAGTGATATGTATCATAAGAGACGGGC  99
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GAAAACCTGGGGTAAATGACTGCAGTGATATGTATCATAAGAGACGGGC  97

seq1  ACTGTGTTTTGCAGTAGATGAGGTACCCAG-AGAATCTTTTTAGGAACTG  148
      ||||||||||||||||||||| |||||||| |||||||||||| ||||||
seq2  ACTGTGTTTTGCAGTAGATGAAGTACCCAGAAGAATCTTTTTAAGAACTG  147

seq1  TTTGGAGACAAGACACACAGGCATGCATGCAGACATGTACGCACACAAGC  198
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  -TTGGAGACAAGACACACGGGCATGCATGCAGACATGTACGCACACAAGC  196

seq1  ACACACACATGCACGCAAGCATGGCATGGACAGAGAGATCTTTTTGATTA  248
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACACACACATGCACGCAAGCATGGCATGAACAGAGAGATCTTTTTGATTA  246

seq1  GCAAGCAAACATCATATAGACAGAGAAACCTCCTGATAGAAAGTAGAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAACATCATATAGACAGAGAAACCTCCTGATAGAAAGTAGAACA  296

seq1  TAGAGAGAAGCAGACCTGAAAAGCTGGATCAAGCAGAACACAGGTCATCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAAGCAGACCTGAAAAGCTGGATCAAGCAGAACACAGGTCATCA  346

seq1  GCTTGGATTCACAATTTCATTTCACGCCATTTTTTTTTTTTTTTGGTGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATTCACAATTTCATTTCACGCCATTTTTTTTTTTTTTTGGTGAT  396

seq1  CCCAAACCCCTCTTTTCTCAGAACCTCTCTCAAAGCAGAGGGTGGTCCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCCCTCTTTTCTCAGAACCTCTCTCAAAGCAGAGGGTGGTCCTT  446

seq1  GGAAACAGACCAATAGGACCTAGGTCACACATAATATAGAAATCTCAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGACCAATAGGACCTAGGTCACACATAATATAGAAATCTCAGAT  496

seq1  GACCAAGATGGGACTAAATGATCCCCAACATGAAACCTAACCTTAACACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGATGGGACTAAATGATCCCCAACATGAAACCTAACCTTAACACT  546

seq1  TTTCCCTCTTCCCTTGCCCACTGCTACCTCCTCATTCTGGATGACCTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTTCCCTTGCCCACTGCTACCTCCTCATTCTGGATGACCTGAA  596

seq1  ACTAACCACATTGACAGGCATATCTTAACACATCAAATGCACAGAGATCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCACATTGACAGGCATATCTTAACACATCAAATGCACAGAGATCC  646

seq1  ATCTACCTCATCCTCATGAATACTTGTTTCACCACCACACCTAGCTTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTCATCCTCATGAATACTTGTTTCACCACCACACCTAGCTTCTA  696

seq1  AACTGACACTTTAAAACACCTTATATTTTGGCCACTCCTTAGCCTAAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACACTTTAAAACACCTTATATTTTGGCCACTCCTTAGCCTAAGAA  746

seq1  CCTGGATCCTTTCCTTTGGTGTATATCAGGCCCATGACCTTTGCCTCTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATCCTTTCCTTTGGTGTATATCAGGCCCATGACCTTTGCCTCTGC  796

seq1  TTCTCCTTTGACCACACATTCATATGGCAAATTCCCTCATCCTCTAAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTGACCACACATTCATATGGCAAATTCCCTCATCCTCTAAGCT  846

seq1  CTGCTCAGTTGTCTAGGTGAATCCTGCCCTAACCTTACTCTCTCCATGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTTGTCTAGGTGAATCCTGCCCTAACCTTACTCTCTCCATGCA  896

seq1  CAAGCTTACACCTCAGACTCTATCTTTTTTCCGGGCTTAGTGCATGTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTACACCTCAGACTCTATCTTTTTTCCGGGCTTAGTGCATGTTTT  946

seq1  TAGTGCACCCGCACTGTCTGACATGTTTCCCTTATTTCTGTAGATTTTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCACCCGCACTGTCTGACATGTTTCCCTTATTTCTGTAGATTTTGT  996

seq1  TTCATCACTGGGAGGCATGTTCCATGAAGATGAGGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACTGGGAGGCATGTTCCATGAAGATGAGGAATTC  1036