BAC Information

Click to search

BAC

Clone NameB6Ng01-107N15
Chromosome4 (Build37)
Map Location 36,163,293 - 36,284,006
singlet/doubletdoublet
Overlap genenone
Upstream gene3110043O21Rik, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107N15.bB6Ng01-107N15.g
ACCDH915196DH915197
length1,1061,122
definitionDH915196|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N15, 5' end.DH915197|Mus musculus domesticus DNA, BAC clone: B6Ng01-107N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,282,987 - 36,284,006)(36,163,293 - 36,164,438)
sequence
gaattctttgttctgttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttaggataggtaaatatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
ttcacttagatttgaccttagtacaaggagataggaatggatcgatttgc
attcttctacatgatgaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtttgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccaatacattatttctttatataagtcttc
tgcccctccttctaaacactatatcaatgtgtttctcattgttatttttt
attgctctgataagatatcataatcaacatagataagagtttatgaggcc
tcacagttttagagggtgagtctgtgatctacatggcaaggaacatggca
gcaggcagatttttttgtgtgatctactctacttttaaatctgtttgtta
tgctttttattattttattttttgtttcattcaatcaaataactttgttt
ctttttagcaatgtgtatctttgttgcacacctatagtcacatgtgtgtg
catgcaaatacacacagtcattcgtgttttattttattgaaatcattgag
tatttgtctgtgcattcttttgtattactgaactcccttaaggtaattat
ttagctacttttttctgcaaaatagtctttgttttagttagatcaattga
tgggcaataaatgtgtccttctctggtggggctgtattctctgggattca
ttcttt
gaattctccagccctaacttcatccagtgtttttgttgtgaatacggtta
aatatttatatcgattaggtctgtttattgttttgttagaaagcttttct
gctgggggcaatgtctttgtatgtgtgactttcaccatttgatttgattg
aattgcattggttcccctcctcatgtactctgaagaccttcttaaacttc
cttaagttaataaaaacactaattttacagattataaaaataaatagacc
ttggtaattgccatctacttagcttttgttacatttctgtttatctcctg
tttcagggaataagaaagacctttctttatccatatgctttgcttacaac
agcaacaacttacaacagcaagtgattatcttagatgaggcaggccctta
gctgatccaacaggtccctttactttctctataatcttaagcactgttag
tcttgggttatattaactttgtgtcagttagacattctcttatcacaaat
ttgtggactttcattagttgagatcaactactcttgctatagagttacaa
gaacagtttggcaggagatttggttcaattttaaagggatgaaaaccttc
tttggcgaaacttcattaaataacagctggtgttgttgagcttattttag
tcagttgtccaaagattcataggttgattgctttatccttagtgtgaggg
atgttactgcatgaaacagtatttaggaagtagaacgtaactggaagcag
caagattggcctctccctttttagtgttcctgttatcatggtcttcccac
attgccctgaggaccttgccagaaattggaactacgccctggaacaatga
tctgaataaaccacatttctttatgagattagcaatggaaaacaaatgaa
cacataattttttaaatctagttcatatttaaattattagcctgaacatg
tctttatgcaaattggattttagataattcctatactggtggtttgatta
gcttatactatgatacctaaaatatttatattgtacaaaagtaccagaag
aatgatagtgaacaaaatacgcactcattattaaagaaaatttgtgcatg
gagaaatgagtcgatggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36282987_36284006
seq2: B6Ng01-107N15.b_133_1149 (reverse)

seq1  AAAGAATGAATTCCAGGAGAATACAGCACCACCAGAGAAGGACCACATTT  50
      ||||||||||| ||| ||||||||||| |||||||||||||| |||||||
seq2  AAAGAATGAATCCCA-GAGAATACAGCCCCACCAGAGAAGGA-CACATTT  48

seq1  ATTGCCCATCAATTGATCTAACTAAAACAAAGACTTATTTTGGCAG-AAA  99
      |||||||||||||||||||||||||||||||||| |||||| |||| |||
seq2  ATTGCCCATCAATTGATCTAACTAAAACAAAGAC-TATTTT-GCAGAAAA  96

seq1  AAGTAGCTAAATAATTACCTTAAGGGAGTTCAGTAATACAAAAGAATGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTAAATAATTACCTTAAGGGAGTTCAGTAATACAAAAGAATGCA  146

seq1  CAGACAAATACTCAATGATTTCAATAAAATAAAACACGAATGACTGTGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAATACTCAATGATTTCAATAAAATAAAACACGAATGACTGTGTG  196

seq1  TATTTGCATGCACACACATGTGACTATAGGTGTGCAACAAAGATACACAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCATGCACACACATGTGACTATAGGTGTGCAACAAAGATACACAT  246

seq1  TGCTAAAAAGAAACAAAGTTATTTGATTGAATGAAACAAAAAATAAAATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAAAGAAACAAAGTTATTTGATTGAATGAAACAAAAAATAAAATA  296

seq1  ATAAAAAGCATAACAAACAGATTTAAAAGTAGAGTAGATCACACAAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCATAACAAACAGATTTAAAAGTAGAGTAGATCACACAAAAAA  346

seq1  ATCTGCCTGCTGCCATGTTCCTTGCCATGTAGATCACAGACTCACCCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCTGCCATGTTCCTTGCCATGTAGATCACAGACTCACCCTCT  396

seq1  AAAACTGTGAGGCCTCATAAACTCTTATCTATGTTGATTATGATATCTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTGAGGCCTCATAAACTCTTATCTATGTTGATTATGATATCTTA  446

seq1  TCAGAGCAATAAAAAATAACAATGAGAAACACATTGATATAGTGTTTAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCAATAAAAAATAACAATGAGAAACACATTGATATAGTGTTTAGA  496

seq1  AGGAGGGGCAGAAGACTTATATAAAGAAATAATGTATTGGTATAGTGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGCAGAAGACTTATATAAAGAAATAATGTATTGGTATAGTGACA  546

seq1  GACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATGAACCCACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATGAACCCACAA  596

seq1  ACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAA  646

seq1  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTCATCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTCATCAT  696

seq1  GTAGAAGAATGCAAATCGATCCATTCCTATCTCCTTGTACTAAGGTCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGAATGCAAATCGATCCATTCCTATCTCCTTGTACTAAGGTCAAA  746

seq1  TCTAAGTGAATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTGAATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTAT  796

seq1  AGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAAT  846

seq1  TCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAA  896

seq1  TGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAA  946

seq1  TAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATATTTACCTATCCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATATTTACCTATCCTA  996

seq1  AATCGGATAGGGGACTAATAT  1020
      |||||||||||||||||||||
seq2  AATCGGATAGGGGACTAATAT  1017

seq1: chr4_36163293_36164438
seq2: B6Ng01-107N15.g_65_1186

seq1  GAATTCTCCAGCCCTAACTTCATCCAGTGTTTTTGTTGTGAATACGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGCCCTAACTTCATCCAGTGTTTTTGTTGTGAATACGGTTA  50

seq1  AATATTTATATCGATTAGGTCTGTTTATTGTTTTGTTAGAAAGCTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATATCGATTAGGTCTGTTTATTGTTTTGTTAGAAAGCTTTTCT  100

seq1  GCTGGGGGCAATGTCTTTGTATGTGTGACTTTCACCATTTGATTTGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGGCAATGTCTTTGTATGTGTGACTTTCACCATTTGATTTGATTG  150

seq1  AATTGCATTGGTTCCCCTCCTCATGTACTCTGAAGACCTTCTTAAACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATTGGTTCCCCTCCTCATGTACTCTGAAGACCTTCTTAAACTTC  200

seq1  CTTAAGTTAATAAAAACACTAATTTTACAGATTATAAAAATAAATAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTAATAAAAACACTAATTTTACAGATTATAAAAATAAATAGACC  250

seq1  TTGGTAATTGCCATCTACTTAGCTTTTGTTACATTTCTGTTTATCTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTGCCATCTACTTAGCTTTTGTTACATTTCTGTTTATCTCCTG  300

seq1  TTTCAGGGAATAAGAAAGACCTTTCTTTATCCATATGCTTTGCTTACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGAATAAGAAAGACCTTTCTTTATCCATATGCTTTGCTTACAAC  350

seq1  AGCAACAACTTACAACAGCAAGTGATTATCTTAGATGAGGCAGGCCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAACTTACAACAGCAAGTGATTATCTTAGATGAGGCAGGCCCTTA  400

seq1  GCTGATCCAACAGGTCCCTTTACTTTCTCTATAATCTTAAGCACTGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCCAACAGGTCCCTTTACTTTCTCTATAATCTTAAGCACTGTTAG  450

seq1  TCTTGGGTTATATTAACTTTGTGTCAGTTAGACATTCTCTTATCACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTTATATTAACTTTGTGTCAGTTAGACATTCTCTTATCACAAAT  500

seq1  TTGTGGACTTTCATTAGTTGAGATCAACTACTCTTGCTATAGAGTTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGACTTTCATTAGTTGAGATCAACTACTCTTGCTATAGAGTTACAA  550

seq1  GAACAGTTTGGCAGGAGATTTGGTTCAATTTTAAAGGGATGAAAACCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTTGGCAGGAGATTTGGTTCAATTTTAAAGGGATGAAAACCTTC  600

seq1  TTTGGCGAAACTTCATTAAATAACAGCTGGTGTTGTTGAGCTTATTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCGAAACTTCATTAAATAACAGCTGGTGTTGTTGAGCTTATTTTAG  650

seq1  TCAGTTGTCCAAAGATTCATAGGTTGATTGCTTTATCCTTAGTGTGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTCCAAAGATTCATAGGTTGATTGCTTTATCCTTAGTGTGAGGG  700

seq1  ATGTTACTGCATGAAACAGTATTTAGGAAGTAGAACGTAACTGGAAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTGCATGAAACAGTATTTAGGAAGTAGAACGTAACTGGAAGCAG  750

seq1  CAAGATTGGCCTCTCCCTTTTTAGTGTTCCTGTTATCATGGTCTTCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGGCCTCTCCCTTTTTAGTGTTCCTGTTATCATGGTCTTCCCAC  800

seq1  ATTGCCCTGAGGACCTTGCCAGAAATTGGAACTACGCCCTGGAACAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCTGAGGACCTTGCCAGAAATTGGAACTACGCCCTGGAACAATGA  850

seq1  TCTGAATAAACCACATTTCTTTATGAGATTAGCAATGGAAAACAAATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAAACCACATTTCTTTATGAGATTAGCAATGGAAAACAAATGAA  900

seq1  CACATAATTTTTTAAATCTAGTTCATATTTAAATTATTAGCCTGAACAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACATAATTTTTTAAATCTAGTTCATATTTAAATTATTAGCCTGAAC-AT  949

seq1  GTTCTTTATGCAAATTGGATTTTTAAGATAAAATTCCTAATACTTGTGGT  1000
      | |||||||||||||||||||||  ||||  ||||||| ||||| |||||
seq2  G-TCTTTATGCAAATTGGATTTT--AGAT--AATTCCT-ATACTGGTGGT  993

seq1  TTGATTAAGCTTATACTATGAATACCCTAAAATAATTTTATATTGGTACA  1050
      |||||| ||||||||||||| ||| |||||||||  |||||||| |||||
seq2  TTGATT-AGCTTATACTATG-ATA-CCTAAAATA--TTTATATT-GTACA  1037

seq1  AAAGTACCCAGAAGGATTGATAGTGAACAAAATAAGGCACTCATTATTTA  1100
      |||||| |||||| || |||||||||||||||| | |||||||||| |||
seq2  AAAGTA-CCAGAA-GAATGATAGTGAACAAAAT-ACGCACTCATTA-TTA  1083

seq1  AAGGAAAATAGTGTGCACATGAGAAAAAGGAAGTCAGATGGAGTGG  1146
      ||| ||| | |||    |||| || ||| | |||| ||||||||||
seq2  AAGAAAATTTGTG----CATG-GAGAAATG-AGTC-GATGGAGTGG  1122