BAC Information

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BAC

Clone NameB6Ng01-108A07
Chromosome4 (Build37)
Map Location 91,089,135 - 91,090,286
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
Downstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A07.bB6Ng01-108A07.g
ACCDH915315DH915316
length1,2541,138
definitionDH915315|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A07, 5' end.DH915316|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttaatgacttactatgaggcccaagttttcaacttaatagcc
cagcgtatcagcttaagcaacaagttttaaactcaaagtttctaacacaa
tacaatccaaacatgcactgatttggatcctgatggacgacaggaaaaca
gatattaagtcttcattgtccgtaattaaacctgtatgttttataagagt
ataacatttatgagagtatatgtacagtaaaggtacaactcataacataa
aatactctcaaatctgagccaaggtatttcaggcaaaatctattgatagt
gtgtgcaggatggcatgagcaatgcagtgtgtgtgctgtgtatttggaag
ctgcagtaaagctgagtggtgctcagagcacacacagtacacatttgact
tttaattcttttcctcattgcccattcagaaaacttttatagttgttaaa
agttttgtaactcccaacataatgcattcatccaagcagtaacatgggtg
atcacaatacacagtttaggaagttgcactcagcaaaactgggacaaggg
cccatgaagttccacctatagctgaggagcgatgggcatctgctggctac
tggggaatggagagttgattttctttagaaatattgtccctagtagcttg
tccatgttacagtcaatggcccacacccacatatgtagtagagaaactaa
atggatttgatgaattaaaaaagaagaaaacttgaagttggaaacaagtt
aaagaatgtgaaaaagatggaagagatttgatcaacatatattgtattca
tgtatcaaggttttaaccataaaaaataaaaactaggatctttatgaatt
ctacaatcccttcaagaaaaattgaaggacatgaaggtttatattggtga
tagattaactatagtgggtcctcttctgtataatctgagattcatccaat
aagtctatataattctaaaatattatagaggatcatttaggatgttttat
tattattctgagtataaactgggccagaagagataagaaaataacaatta
gggaatagtcatgagtaacatatagttagtcatactagccatcttacatt
gaaggttgtagaaagaaacttgttagacatagaatactctgcactggacc
tggtgatctgcaccgctcgatacagctctgttggtaattcacaatgcggc
ataacagatcgttatatttgaatcatcgctgcctgaatgtggcgaataaa
ctcg
gaattcacctttcctggtgctttattactaattttttttctgccaagttt
tccactgttgtggagagtagagaaaacagaagacatgtaaataggttctc
ctctcacacagtacatcccaaccacagtttcctttcctttccactccttc
cagctccaacatctcctttcttccctagatccaatctccctccatctccc
ttcagagagagcaggcctctcagaaacaattagacagggcaaagccttca
tatcaaggctggacaaggcaaataggtagaaggaaatgagtctcaagaac
aggcagaagtctcagagacaggctcacacctattgttggaattttcacaa
aaatagcaagctaacagccacaacatacacacaacacaagaacctggtac
agacccatgcaacccccccacccaagaaaggtcaaaggatgctgagagta
aggtgttgtactatatcttaaaggaaaaatctctcagcctttctgcttag
attatttttttctatattttattattactattgttacatttatttttatt
tgtttgtttggaaaaagtgtttctctctattgccttgctgtcctgaaact
tgctctgtagaccaggctggccttgaactcagagatatttgcctgtctct
acctgccaaatgctaggattaaaggtgtatgctatcacgaccctactaca
tttaacttttctttaaaaaataatatttttattaatctgtgaggtttcat
acaaagaattttgatcatagtcattcatgattaatttattattagtttat
tagttagttgttctattttcacatatgaccttaattgaattgtggaagtt
ttcctctagccttgtttcatagagatatcataatattgtgaatattcctt
ctgaaataatcatatggttttgttttttaggatgtatgtgtttgcttgaa
tctaaactgtcacctgctagcttctgtttcaacatctctagtttgtgcaa
gatttgaaggattcaagcttttaaaaatagggcatggctggcatataaca
gacactgactgctttgttgctacttttctctgtaactagtcaactatgtg
gaacaatctctgtctaaacattttcatggcgggaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91089135_91090286
seq2: B6Ng01-108A07.g_65_1202

seq1  GAATTCACCTTTCCTGGTGCTTTATTACTAATTTTTTTTCTGCCAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTCCTGGTGCTTTATTACTAATTTTTTTTCTGCCAAGTTT  50

seq1  TCCACTGTTGTGGAGAGTAGAGAAAACAGAAGACATGTAAATAGGTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTTGTGGAGAGTAGAGAAAACAGAAGACATGTAAATAGGTTCTC  100

seq1  CTCTCACACAGTACATCCCAACCACAGTTTCCTTTCCTTTCCACTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACACAGTACATCCCAACCACAGTTTCCTTTCCTTTCCACTCCTTC  150

seq1  CAGCTCCAACATCTCCTTTCTTCCCTAGATCCAATCTCCCTCCATCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCAACATCTCCTTTCTTCCCTAGATCCAATCTCCCTCCATCTCCC  200

seq1  TTCAGAGAGAGCAGGCCTCTCAGAAACAATTAGACAGGGCAAAGCCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAGAGCAGGCCTCTCAGAAACAATTAGACAGGGCAAAGCCTTCA  250

seq1  TATCAAGGCTGGACAAGGCAAATAGGTAGAAGGAAATGAGTCTCAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGGCTGGACAAGGCAAATAGGTAGAAGGAAATGAGTCTCAAGAAC  300

seq1  AGGCAGAAGTCTCAGAGACAGGCTCACACCTATTGTTGGAATTTTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAGTCTCAGAGACAGGCTCACACCTATTGTTGGAATTTTCACAA  350

seq1  AAATAGCAAGCTAACAGCCACAACATACACACAACACAAGAACCTGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAAGCTAACAGCCACAACATACACACAACACAAGAACCTGGTAC  400

seq1  AGACCCATGCAACCCCCCCACCCAAGAAAGGTCAAAGGATGCTGAGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATGCAACCCCCCCACCCAAGAAAGGTCAAAGGATGCTGAGAGTA  450

seq1  AGGTGTTGTACTATATCTTAAAGGAAAAATCTCTCAGCCTTTCTGCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTGTACTATATCTTAAAGGAAAAATCTCTCAGCCTTTCTGCTTAG  500

seq1  ATTATTTTTTTCTATATTTTATTATTACTATTGTTACATTTATTTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTTCTATATTTTATTATTACTATTGTTACATTTATTTTTATT  550

seq1  TGTTTGTTTGGAAAAAGTGTTTCTCTCTATTGCCTTGCTGTCCTGAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGGAAAAAGTGTTTCTCTCTATTGCCTTGCTGTCCTGAAACT  600

seq1  TGCTCTGTAGACCAGGCTGGCCTTGAACTCAGAGATATTTGCCTGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTAGACCAGGCTGGCCTTGAACTCAGAGATATTTGCCTGTCTCT  650

seq1  ACCTGCCAAATGCTAGGATTAAAGGTGTATGCTATCACGACCCTACTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCAAATGCTAGGATTAAAGGTGTATGCTATCACGACCCTACTACA  700

seq1  TTTAACTTTTCTTTAAAAAATAATATTTTTATTAATCTGTGAGGTTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTTTCTTTAAAAAATAATATTTTTATTAATCTGTGAGGTTTCAT  750

seq1  ACAAAGAATTTTGATCATAGTCATTCATGATTAATTTATTATTAGTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAATTTTGATCATAGTCATTCATGATTAATTTATTATTAGTTTAT  800

seq1  TAGTTAGTTGTTCTATTTTCACATATGACCTTAATTGAATTGTGGAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTTGTTCTATTTTCACATATGACCTTAATTGAATTGTGGAAGTT  850

seq1  TTCCTCTAGCCTTGTTTCATAGAGATATCATAATATTGTGAATATTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTAGCCTTGTTTCATAGAGATATCATAATATTGTGAATATTCCTT  900

seq1  CTGAAATAATCATATGGTTTTGTTTTTTTAGGATGTATGTGTTTTGCTTG  950
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  CTGAAATAATCATATGGTTTTG-TTTTTTAGGATGTATGTG-TTTGCTTG  948

seq1  AATCTAAACTGTCACCTGCTAGCTTCTGTTTTCAACAATCTCTAGTTTGT  1000
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  AATCTAAACTGTCACCTGCTAGCTTCTG-TTTCAAC-ATCTCTAGTTTGT  996

seq1  GGCAAGATTTTGAAGGATTCAAAGCTTTTAGAAAATAGGGCATGGCTGGC  1050
       |||||| |||||||||||| ||||||||| |||||||||||||||||||
seq2  -GCAAGA-TTTGAAGGATTC-AAGCTTTTA-AAAATAGGGCATGGCTGGC  1042

seq1  ATAT-ACAGACACTGAACTGCTTTTGGTTCTGGCTAC-TTTCTCTGTAAC  1098
      |||| |||||||||| ||||||||  |||   ||||| ||||||||||| 
seq2  ATATAACAGACACTG-ACTGCTTT--GTT---GCTACTTTTCTCTGTAA-  1085

seq1  CTAGTCCATACTATGT-GAACATACTCTGTCATAAAC-TATTCATGCCGG  1146
      ||||||   ||||||| |||||  ||||||| ||||| | |||||| |||
seq2  CTAGTC--AACTATGTGGAACAATCTCTGTC-TAAACATTTTCATGGCGG  1132

seq1  GGACTA  1152
      | ||||
seq2  GAACTA  1138