MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-108D01
Chromosome	4 (Build37)
Map Location	122,097,099 - 122,098,116
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC666927, LOC666931, LOC666937
Downstream gene	LOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC666927 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC666931 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins

name	LOC666937 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 79 ESTs, 23 Proteins pseudo : _no_value

name	LOC633269 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:633269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins

name	LOC633279 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:633279
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	9530002B09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77432 MGI:1924682
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19063 MGI:1298204
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12331 MGI:88262
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mfsd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76574 MGI:1923824
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mycl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16918 MGI:96799
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trit1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66966 MGI:1914216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bmp8b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12164 MGI:107335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Oxct2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:353371 MGI:2664115
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppie (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56031 MGI:1917118
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hpcal4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170638 MGI:2157521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nt5c1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230718 MGI:2155700
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins

name	Heyl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56198 MGI:1860511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC194197 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:194197
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC622334 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622334
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins pseudo : _no_value

name	Pabpc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230721 MGI:2385206
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Bmp8a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12163 MGI:104515
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Oxct2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64059 MGI:1891061
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Macf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11426 MGI:108559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 302 ESTs, 22 Proteins

name	D830031N03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:442834 MGI:3045367
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 1 Protein

name	LOC666927 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252889 GeneID:666927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : hypothetical LOC666927 transcript_id : XM_987049.2

name	LOC666931 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253078 GeneID:666931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : hypothetical LOC666931 transcript_id : XM_987080.2

name	LOC633269 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372500 GeneID:633269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins product : similar to urea transporter transcript_id : XM_987282.1

name	LOC633279 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372502 GeneID:633279
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to AUMP transcript_id : XM_987307.1

name	9530002B09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115292435 GeneID:77432 MGI:1924682
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9530002B09 gene transcript_id : NM_023865.3

name	Ppt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121674796 GeneID:19063 MGI:1298204
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : palmitoyl-protein thioesterase 1 transcript_id : NM_008917.2

name	Cap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560729 GeneID:12331 MGI:88262
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CAP, adenylate cyclase-associated protein 1 (yeast) transcript_id : NM_007598.2

name	Mfsd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037448 GeneID:76574 MGI:1923824
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : major facilitator superfamily domain containing 2 transcript_id : NM_029662.1

name	Mycl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328139 GeneID:16918 MGI:96799
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) transcript_id : NM_008506.2

name	Trit1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354403 GeneID:66966 MGI:1914216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tRNA isopentenyltransferase 1 transcript_id : NM_025873.2

name	Bmp8b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387766 GeneID:12164 MGI:107335
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bone morphogenetic protein 8b transcript_id : NM_007559.3

name	Oxct2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372607 GeneID:353371 MGI:2664115
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 3-oxoacid CoA transferase 2B transcript_id : NM_181859.2

name	Ppie (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372418 GeneID:56031 MGI:1917118
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peptidylprolyl isomerase E (cyclophilin E) transcript_id : NM_019489.3

name	Hpcal4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379792 GeneID:170638 MGI:2157521
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hippocalcin-like 4 transcript_id : NM_174998.2

name	Nt5c1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51709445 GeneID:230718 MGI:2155700
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : 5'-nucleotidase, cytosolic IA transcript_id : XM_112246.3

name	Heyl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606342 GeneID:56198 MGI:1860511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hairy/enhancer-of-split related with YRPW motif-like transcript_id : NM_013905.3

name	Pabpc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34419621 GeneID:230721 MGI:2385206
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poly A binding protein, cytoplasmic 4 transcript_id : NM_130881.2

name	Pabpc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130218 GeneID:230721 MGI:2385206
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poly A binding protein, cytoplasmic 4 transcript_id : NM_148917.2

name	Bmp8a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892640 GeneID:12163 MGI:104515
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bone morphogenetic protein 8a transcript_id : NM_007558.2

name	Oxct2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802949 GeneID:64059 MGI:1891061
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 3-oxoacid CoA transferase 2A transcript_id : NM_022033.2

name	Macf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253093 GeneID:11426 MGI:108559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 257 ESTs, 14 Proteins product : microtubule-actin crosslinking factor 1 transcript_id : XM_001472723.1

name	Macf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253091 GeneID:11426 MGI:108559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 259 ESTs, 15 Proteins product : microtubule-actin crosslinking factor 1 transcript_id : XM_001472697.1

name	Macf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253089 GeneID:11426 MGI:108559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 282 ESTs, 14 Proteins product : microtubule-actin crosslinking factor 1 transcript_id : XM_001472676.1

name	Macf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253087 GeneID:11426 MGI:108559
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 287 ESTs, 16 Proteins product : microtubule-actin crosslinking factor 1, transcript variant 2 transcript_id : XM_884922.3

name	D830031N03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372485 GeneID:442834 MGI:3045367
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 1 Protein product : RIKEN cDNA D830031N03 gene transcript_id : XM_885053.2

name	LOC666927 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252890 GeneID:666927
definition	codon_start : 1 product : hypothetical protein protein_id : XP_992143.2

name	LOC666931 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253079 GeneID:666931
definition	codon_start : 1 product : hypothetical protein protein_id : XP_992174.2

name	LOC633269 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94372501 GeneID:633269
definition	codon_start : 1 product : similar to urea transporter protein_id : XP_992376.1

name	LOC633279 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94372503 GeneID:633279
definition	codon_start : 1 product : similar to AUMP protein_id : XP_992401.1

name	9530002B09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14010845 CCDS:CCDS18603.1 GeneID:77432 MGI:1924682
definition	codon_start : 1 note : palmitoyl protein thioesterase-like protein; ventral prostrate predominant 1 product : palmitoyl-protein thioesterase-like protein protein_id : NP_076354.1

name	Ppt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121674797 GeneID:19063 MGI:1298204
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005615 - extracellular space [Evidence IDA]; GO:0005764 - lysosome [Evidence IDA] [Evidence IMP] [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008474 - palmitoyl-(protein) hydrolase activity [Evidence IMP] [Evidence IDA] GO_process : GO:0008344 - adult locomotory behavior [Evidence IMP]; GO:0008306 - associative learning [Evidence IMP]; GO:0044257 - cellular protein catabolism [Evidence IMP]; GO:0007625 - grooming behavior [Evidence IMP]; GO:0007040 - lysosome organization and biogenesis [Evidence IMP]; GO:0007269 - neurotransmitter secretion [Evidence IMP]; GO:0006907 - pinocytosis [Evidence ISS]; GO:0002084 - protein depalmitoylation [Evidence IMP]; GO:0006464 - protein modification [Evidence IEA]; GO:0006898 - receptor mediated endocytosis [Evidence ISS]; GO:0007601 - visual perception [Evidence IMP] codon_start : 1 product : palmitoyl-protein thioesterase 1 protein_id : NP_032943.2

name	Cap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671666 CCDS:CCDS18604.1 GeneID:12331 MGI:88262
definition	GO_component : GO:0030864 - cortical actin cytoskeleton [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IMP]; GO:0001667 - ameboidal cell migration [Evidence IMP]; GO:0000902 - cell morphogenesis [Evidence IGI]; GO:0006898 - receptor mediated endocytosis [Evidence IMP] codon_start : 1 exception : mismatches in translation note : adenylyl cyclase-associated CAP protein, yeast homolog 1; adenylyl cyclase-associated CAP protein homolog 1 (S. cerevisiae, S. Pombe) iae product : CAP, adenylate cyclase-associated protein 1 protein_id : NP_031624.1

name	Mfsd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037449 CCDS:CCDS18605.1 GeneID:76574 MGI:1923824
definition	codon_start : 1 exception : mismatches in translation product : major facilitator superfamily domain containing 2 protein_id : NP_083938.1

name	Mycl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678704 CCDS:CCDS18606.1 GeneID:16918 MGI:96799
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0050875 - cellular physiological process [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : lung carcinoma myc related oncogene 1 protein_id : NP_032532.1

name	Trit1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229019 CCDS:CCDS18607.1 GeneID:66966 MGI:1914216
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004811 - tRNA isopentenyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 product : tRNA isopentenyltransferase 1 protein_id : NP_080149.2

name	Bmp8b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560733 CCDS:CCDS18608.1 GeneID:12164 MGI:107335
definition	GO_function : GO:0005125 - cytokine activity [Evidence TAS]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0051216 - cartilage development [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0040007 - growth [Evidence IEA]; GO:0001503 - ossification [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence TAS] codon_start : 1 product : bone morphogenetic protein 8b protein_id : NP_031585.2

name	Oxct2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348588 CCDS:CCDS18609.1 GeneID:353371 MGI:2664115
definition	GO_component : GO:0009434 - flagellum (sensu Eukaryota) [Evidence ISS]; GO:0005739 - mitochondrion [Evidence ISS] GO_function : GO:0008410 - CoA-transferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006091 - generation of precursor metabolites and energy [Evidence TAS]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : succinyl CoA:3-oxoacid CoA-transferase product : 3-oxoacid CoA transferase 2B protein_id : NP_862907.1

name	Ppie (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14196340 CCDS:CCDS18610.1 GeneID:56031 MGI:1917118
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : peptidylprolyl isomerase E protein_id : NP_062362.1

name	Hpcal4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27923929 CCDS:CCDS18611.1 GeneID:170638 MGI:2157521
definition	codon_start : 1 note : neural visinin-like protein 2 product : hippocalcin-like 4 protein_id : NP_778163.1

name	Nt5c1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51709446 GeneID:230718 MGI:2155700
definition	codon_start : 1 product : similar to 5-nucleotidase, cytosolic IA protein_id : XP_112246.3

name	Heyl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560486 CCDS:CCDS18613.1 GeneID:56198 MGI:1860511
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003702 - RNA polymerase II transcription factor activity [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence ISS]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 note : hairy and enhance of split related 3; hairy-related transcription factor 3 product : hairy/enhancer-of-split related with YRPW motif-like protein_id : NP_038933.2

name	Pabpc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34419622 CCDS:CCDS18614.1 GeneID:230721 MGI:2385206
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008143 - poly(A) binding [Evidence ISS]; GO:0017130 - poly(rC) binding [Evidence ISS]; GO:0008266 - poly(U) binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : poly(A) binding protein, cytoplasmic 4 isoform 1 protein_id : NP_570951.2

name	Pabpc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22507391 CCDS:CCDS18615.1 GeneID:230721 MGI:2385206
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008143 - poly(A) binding [Evidence ISS]; GO:0017130 - poly(rC) binding [Evidence ISS]; GO:0008266 - poly(U) binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : poly(A) binding protein, cytoplasmic 4 isoform 2 protein_id : NP_683717.1

name	Bmp8a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671644 CCDS:CCDS18616.1 GeneID:12163 MGI:104515
definition	GO_function : GO:0005125 - cytokine activity [Evidence TAS]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0051216 - cartilage development [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0040007 - growth [Evidence IEA]; GO:0001503 - ossification [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence TAS] codon_start : 1 note : osteogenic protein 2 product : bone morphogenetic protein 8a protein_id : NP_031584.1

name	Oxct2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11968160 CCDS:CCDS18617.1 GeneID:64059 MGI:1891061
definition	GO_component : GO:0005739 - mitochondrion [Evidence TAS] [Evidence IDA] GO_function : GO:0008260 - 3-oxoacid CoA-transferase activity [Evidence ISS]; GO:0008410 - CoA-transferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA]; GO:0006104 - succinyl-CoA metabolism [Evidence ISS] codon_start : 1 note : haploid germ cell specific succinyl CoA transferase; succinyl-CoA:3-oxoacid CoA-transferase product : 3-oxoacid CoA transferase 2A protein_id : NP_071316.1

name	Macf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253094 GeneID:11426 MGI:108559
definition	codon_start : 1 product : microtubule-actin crosslinking factor 1 protein_id : XP_001472773.1

name	Macf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253092 GeneID:11426 MGI:108559
definition	codon_start : 1 product : microtubule-actin crosslinking factor 1 protein_id : XP_001472747.1

name	Macf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253090 GeneID:11426 MGI:108559
definition	codon_start : 1 product : microtubule-actin crosslinking factor 1 protein_id : XP_001472726.1

name	Macf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253088 GeneID:11426 MGI:108559
definition	codon_start : 1 product : microtubule-actin crosslinking factor 1 isoform 2 protein_id : XP_890015.3

name	D830031N03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895149 GeneID:442834 MGI:3045367
definition	codon_start : 1 product : similar to mKIAA0754 protein protein_id : XP_890146.1

name	LOC194197 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:194197
definition	number : 1 pseudo : _no_value

name	LOC194197 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:194197
definition	number : 2 pseudo : _no_value

name	LOC666937 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253080 GeneID:666937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 79 ESTs, 23 Proteins product : similar to creatine kinase pseudo : _no_value transcript_id : XR_030521.1

name	LOC622334 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253084 GeneID:622334
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins product : similar to ribosomal protein S7 pseudo : _no_value transcript_id : XR_030761.1

clone name	MSMg01-432A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133E04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-358N19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-413G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051I18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-432A19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-388L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184D15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-490C15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-076A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151N23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-137L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404I14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-475E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305C01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-391J05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-345O12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-236N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533D14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-192H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533D14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-420F06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-522N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131A14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-108D01.b	B6Ng01-108D01.g
ACC	DH915438	DH915439
length	1,205	1,014
definition	DH915438\|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D01, 5' end.	DH915439\|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D01, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattcaaagcccatacctaaacataataaaagcaatgtggagcaaacca gtagccaacatcaaactaaaatgagagaaactcagtcccactaaaatcag gtactagacgaggcagcccactttctccctacctatgcaatatagtacat gaagttctagtcagagcaattagacaacaaaaggagatcacggagataca aattggaaaggaagaagtgaaaacatcactatttgcagatgatatgacaa tatatataagtgaaactaaaattctaccaaagatctcctaaatcttataa acagcttcagtgaattagctggatataaaattaactcaaacaaatcaatg acctttctatacagaaaggataaagggactgagaaagaaattagggaaac aacacctttcacaatagtaacatataaaataacttggtttgactctaagg atgtgaaagatctgtacgataagaacttcaattctctgaagaaagaaatt gaagaagatcccagaagatggaaagatcttccatgctcatgaattggcag gattaatatagtaaaaatgcctatcctgcctcaagcaatctacagattca atgcaatccccatcaaaatttcaactcagtttttcacctagctagaaagg gcaatttgcaaattcatctggaataataaaacctaggatagcaaaaacta ttctcaataataaaggaacctctggtggaatcatcatgcctgccattaaa ctggaatacaaagcaatggtgataaaaaactgcatggtactggtacagtg atacacagttagatcaatggactagaattgaagacccagaaatgaatcca cacacctatggtcacttgatctttgagaaaggagctaaaaccatcccagt ggatgaagaaagcattttcaacaaatggtacaggccacaactggaggtta taatggagaagaatgtgaattgattgattcttttttaaaattaattaggt attttcttcatttatattccaatgcattccaaaagtccccattacattcc ccgcccccacccctactacccactcctactctgaactggcatccctgtac tggatctaattaggttgcagatctatggtctctctcactgatgtccgact agcatcttcgattatatgcatctagaaactggctcgaagaactcgggata tttca	gaattcttttaggaaagaaagagaaaactgcttggagaactgatacaaaa aatcaagcaagacattgatagagagctcatttagaatatcaagcaaagag aatatagacagaaaaatctctagagggaaaacagaacataaagataaaca gtttggaacagctggatcaaatgaacacaggtcatcagcatggatccatg atttgactccaagttattatttttgccacccccagcacctcttatctcac aacccctctccatgctgaggctggtcctttgcacttataggcaaaatgtt catagagataaaataagtaacaaatctcaaacctgtcaaagtaaaataaa taaataaataaataaataaataaataaataaataaaatcataagaaagga aatgggaaaggattaaaagaaatgtctgcaagaatatgggaattggccaa cagtagcttttactaaaatgcaagataaaacagcaaaatttctgatacat atcaggacagacatcaaggagaaggagaactaggaacagttatgaattat tggtggaaatagagcaataaaaccctgtgtaaaactaggtcagtgatata aatgaatgtagttatcaaacgttcaagcaatttcattctttcctttataa gaaattaaataaaaatccagagaaaaccttgcacaaaagtttggagtaac attgttagtaatggaaaaaggtaaaaacaaatcaaatgtctgttaattga taaataagctgtgctatattaatataatggaacactattccctataaata gcatgctgaaacgtgctacaagcaggaagaacctcaaagcatgttctaaa atataaccatctacaaaagacataaagtgtggaataccttttacatgcta tatacagagtaagacatcctaccacattagaaaagtccctagaggttatt cagaagtgaggaaaagaaaggagaaaaaaagatttaactaatagggaggg ttttcttggggctt
quality values	Open. Hide. 61 42 35 38 61 23 17 50 47 47 61 61 43 38 61 61 61 61 61 61 61 61 49 49 61 61 24 28 23 22 26 19 14 26 25 29 59 59 59 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 55 36 44 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 59 61 61 59 61 61 61 61 61 61 61 61 61 61 59 61 59 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 43 49 45 49 45 45 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 55 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 61 61 55 61 52 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 55 61 55 55 55 61 61 49 61 47 55 55 61 61 61 61 61 61 61 61 61 61 61 50 61 61 61 61 61 50 61 61 61 61 61 61 50 61 61 61 61 61 61 45 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 53 53 53 53 61 61 61 61 61 61 61 47 52 45 61 61 61 53 14 15 21 9 14 21 53 61 41 39 61 61 50 61 61 61 53 53 61 61 61 53 61 61 53 61 61 61 61 61 47 43 61 61 47 53 53 61 61 61 52 42 47 61 61 61 61 47 28 53 61 61 52 47 53 53 50 53 57 53 57 50 57 57 35 53 47 47 57 53 53 52 45 53 47 53 53 50 28 53 53 53 53 53 53 43 30 52 57 38 45 53 57 53 53 57 52 45 21 53 52 42 53 53 53 38 53 53 53 53 45 50 57 43 47 42 45 36 13 31 36 28 40 45 32 27 38 38 52 28 32 32 39 45 45 47 57 52 37 41 36 37 30 32 45 30 42 43 30 39 53 39 43 45 52 20 32 34 39 35 21 53 41 46 35 35 38 53 37 45 32 47 53 53 52 41 45 42 36 41 41 38 24 30 38 23 45 53 57 57 57 34 29 39 50 31 23 30 42 57 31 36 36 27 53 57 32 28 38 30 40 41 50 32 28 23 37 28 42 42 42 30 39 32 34 37 35 31 34 14 32 53 52 26 34 27 12 28 52 40 40 37 30 25 33 12 37 23 57 53 23 28 53 57 24 19 40 39 33 29 13 37 12 38 18 35 15 36 38 37 27 23 17 43 24 30 21 40 30 23 28 12 17 25 27 51 30 39 36 24 29 51 30 27 37 30 23 28 29 25 26 30 21 29 29 14 23 5 30 28 27 20 24 29 33 23 26 32 47 23 20 19 45 30 24 18 21 33 48 51 16 18 23 28 34 25 46 14 20 37 18 14 29 29 24 21 29 8 13 14 24 18 17 28 28 30 43 21 14 29 10 29 17 11 12 29 14 11 14 46 15 30 33 14 29 29 24 29 17 23 26 21 29 16 33 28 22 21 29 22 13 20 14 25 39 46 51 51 31 21 31 38 15 11 11 10 23 28 24 9 11 27 14 15 29 30 7 20 29 12 18 23 9 25 36 15 11 13 18 21 16 7 16 24 31 16 27 6 5 5 6 23 38 17 26 38 30 28 15 24 38 36 16 14 11 7 13 16 10 24 23 19 38 30 23 32 30 38 38 35 22 17 24 35 35 29 18 28 28 7 23 26 30 16 6 16 14 30 20 6 13 7 19 15 8 17 7 7 21 12 7 22 5 9 15 3 4 3 3 4 4 10 5 5 6 4 3 4 4 4 4 4 3 3 5 9 7 19 21 17 18 18 5 14 6 28 11 29 11 21 15 5 13 13 6 5 4 8 5 5 6 6 9 9 14 17 3 11 10 4 10 11 5 3 3 3 6 9 11 5 8 5 13 7 4 4 3 4 11 15 11 15 11 4 16 9 6 8 13 8 8 4 5 17 4 2 3 5 13 11 4 4 3 3 7 4 6 16 9 3 1 2 3 4 11 5 5 5	Open. Hide. 61 47 59 49 43 38 33 26 26 19 17 22 28 28 43 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 55 55 61 61 61 61 61 61 61 61 61 61 59 59 52 52 52 37 44 49 59 61 61 61 61 61 61 61 59 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 55 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 59 61 61 61 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 55 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 59 59 61 61 61 61 59 61 61 61 61 61 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 55 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 59 61 61 61 59 61 59 59 61 61 59 52 49 43 49 49 61 61 61 47 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 55 55 61 50 61 50 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 47 61 61 47 61 61 53 61 61 61 61 53 53 61 61 61 61 53 61 61 61 61 37 61 61 61 61 61 61 53 50 61 43 43 61 61 61 61 61 61 61 61 61 61 61 61 61 61 50 61 61 61 61 61 61 61 61 52 61 61 61 61 61 61 61 61 53 47 61 53 61 61 61 61 61 53 53 47 53 53 61 61 46 61 46 61 61 61 24 61 61 61 61 61 61 53 50 61 53 53 53 47 43 47 24 47 47 47 42 47 46 57 47 46 34 42 53 53 47 47 30 47 53 53 53 53 45 53 41 57 45 53 57 47 32 53 50 57 43 50 45 57 57 57 38 39 50 53 50 50 57 42 53 57 53 53 50 53 45 52 53 47 38 50 38 53 53 47 24 37 57 32 57 53 52 35 45 30 57 53 42 47 53 37 18 34 39 42 38 52 34 39 57 53 38 57 57 57 47 47 47 27 39 57 57 57 45 47 13 52 47 50 53 42 50 37 50 57 38 52 50 29 8 30 16 53 45 52 47 37 27 45 57 52 23 19 46 25 52 47 38 18 38 36 40 40 42 42 52 23 13 41 27 30 40 40 50 30 57 30 31 34 33 20 42 47 31 28 29 27 46 44 29 25 30 35 57 53 33 40 27 32 27 34 47 22 42 40 37 57 29 31 35 36 40 30 37 29 27 20 28 34 31 35 44 37 33 37 30 31 29 28 30 28 33 18 44 33 24 28 25 33 44 21 12 17 11 12 53 46 39 29 27 31 15 27 23 23 21 34 32 35 30 30 34 47 45 31 22 30 12 14 29 10 15 8 11 15 14 7 37 15 17 30 7 10 12 23 27 36 33 28 25 19 4 6 30 28 33 28 18 21 29 20 29 22 22 35 12 7 14 29 23 35 18 24 28 29 25 18 33 35 29 9 19 26 14 8 15 17 31 51 51 33 9 22 10 36 18 23 25 26 29 26 29 12 26 14 8 18 14 6 7 7 10 14 24 21 13 13 27 26 5 10 24 18 27 51 23 31 8 7 7 27 41 51 38 36 41 32 9 21 15 41 34 7 17 28 27 13 18 21 14 13 51 31 10 17 51 29 29 38 51 18 28 23 20 22 14 9 5 5 14 21

Alignment Information

BAC End 1

BAC End 2

seq1: chr4_122097099_122098116
seq2: B6Ng01-108D01.g_69_1081

seq1  GAATTCTTTTAGGAAAGAAAGAGAAAACTGCTTGGAGAACTGATACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGGAAAGAAAGAGAAAACTGCTTGGAGAACTGATACAAAA  50

seq1  AATCAAGCAAGACATTGATAGAGAGCTCATTTAGAATATCAAGCAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCAAGACATTGATAGAGAGCTCATTTAGAATATCAAGCAAAGAG  100

seq1  AATATAGACAGAAAAATCTCTAGAGGGAAAACAGAACATAAAGATAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGACAGAAAAATCTCTAGAGGGAAAACAGAACATAAAGATAAACA  150

seq1  GTTTGGAACAGCTGGATCAAATGAACACAGGTCATCAGCATGGATCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAACAGCTGGATCAAATGAACACAGGTCATCAGCATGGATCCATG  200

seq1  ATTTGACTCCAAGTTATTATTTTTGCCACCCCCAGCACCTCTTATCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTCCAAGTTATTATTTTTGCCACCCCCAGCACCTCTTATCTCAC  250

seq1  AACCCCTCTCCATGCTGAGGCTGGTCCTTTGCACTTATAGGCAAAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTCTCCATGCTGAGGCTGGTCCTTTGCACTTATAGGCAAAATGTT  300

seq1  CATAGAGATAAAATAAGTAACAAATCTCAAACCTGTCAAAGTAAAATAAA  350
      |||||||||||||||||||||||||||||||||||||||||||    |||
seq2  CATAGAGATAAAATAAGTAACAAATCTCAAACCTGTCAAAGTA----AAA  346

seq1  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAATCATAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAATCATAAGAA  396

seq1  AGGAAATGGGAAAGGATTAAAAGAAATGTCTGCAAGAATATGGGAATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGGAAAGGATTAAAAGAAATGTCTGCAAGAATATGGGAATTGG  446

seq1  CCAACAGTAGCTTTTACTAAAATGCAAGATAAAACAGCAAAATTTCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTAGCTTTTACTAAAATGCAAGATAAAACAGCAAAATTTCTGAT  496

seq1  ACATATCAGGACAGACATCAAGGAGAAGGAGAACTAGGAACAGTTATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAGGACAGACATCAAGGAGAAGGAGAACTAGGAACAGTTATGAA  546

seq1  TTATTGGTGGAAATAGAGCAATAAAACCCTGTGTAAAACTAGGTCAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTGGAAATAGAGCAATAAAACCCTGTGTAAAACTAGGTCAGTGA  596

seq1  TATAAATGAATGTAGTTATCAAACGTTCAAGCAATTTCATTCTTTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGAATGTAGTTATCAAACGTTCAAGCAATTTCATTCTTTCCTTT  646

seq1  ATAAGAAATTAAATAAAAATCCAGAGAAAACCTTGCACAAAAGTTTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAATTAAATAAAAATCCAGAGAAAACCTTGCACAAAAGTTTGGAG  696

seq1  TAACATTGTTAGTAATGGAAAAAGGTAAAAACAAATCAAATGTCTGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGTTAGTAATGGAAAAAGGTAAAAACAAATCAAATGTCTGTTAA  746

seq1  TTGATAAATAAGCTGTGCTATATTAATATAATGGAACACTATTCCCTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAATAAGCTGTGCTATATTAATATAATGGAACACTATTCCCTATA  796

seq1  AATAGCATGCTGAAACGTGCTACAAGCAGGAAGAACCTCAAAGCATGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATGCTGAAACGTGCTACAAGCAGGAAGAACCTCAAAGCATGTTC  846

seq1  TAAAATATAACCATCTACAAAAGACATAAGTTGTGGAATACCTTTTACAT  900
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  TAAAATATAACCATCTACAAAAGACATAAAGTGTGGAATACCTTTTACAT  896

seq1  GCTATATACAGAGTAAGACATCCTACCACAATAGAAAAGTTCCTAGAGGT  950
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GCTATATACAGAGTAAGACATCCTACCACATTAGAAAAGTCCCTAGAGGT  946

seq1  TA-TCAGAAGTGAGGAAGAGAAAGGAGAAAAAAAAAGATTTAACTAATAG  999
      || |||||||||||||| |||||||||  |||||||||||||||||||||
seq2  TATTCAGAAGTGAGGAAAAGAAAGGAG--AAAAAAAGATTTAACTAATAG  994

seq1  GGAGGGTTTTCTTGGTGCT  1018
      ||||||||||||||| |||
seq2  GGAGGGTTTTCTTGGGGCT  1013

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information