BAC Information

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BAC

Clone NameB6Ng01-108G24
Chromosome4 (Build37)
Map Location 96,838,318 - 96,978,383
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108G24.bB6Ng01-108G24.g
ACCDH915624DH915625
length1,1981,107
definitionDH915624|Mus musculus domesticus DNA, BAC clone: B6Ng01-108G24, 5' end.DH915625|Mus musculus domesticus DNA, BAC clone: B6Ng01-108G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,977,182 - 96,978,383)(96,838,318 - 96,839,414)
sequence
gaattcaatgttctgtgagaccttcaatgaaaaattaatgataacactcc
ttcaaattactttgcaaaatataaactgaaggaacattctctaattcttt
tcatgaaaccactactacgctgataccaaactacacaaaagagcgaaatc
atttataaacacagttgcaaaaattctcaacaaaattcttccaaaccata
tctaagaacagacaaaaaagaatatccttgatgatcaggttaacttcatc
ccagacatgcattaatgattcaacataacacaatctgctagccccaacac
ctccttttaggctttttccagacttgtcttgcctgtattcgcatacagaa
atctttataaggcttccaccactccaacccctacccccaaatcccatgcc
ctcctccagggactagtctggtgagatgctgcctatgccctggattagtc
aatgcctgactctacttattcttggggttagagatgaggtagcatggagt
caatgatgtagactcctggaggggttgagaagggctggaagcaagctcat
ctgaatgcttctgtgagcttctttaataccctcctcccactcctcattgg
tcccaagaaaacatcttttctaaacagcagttcccaattggctggcattg
tcttcatcagcaatccttggtctctcaggcagtcttcaattagatccttc
cgcaggagatgcctttgcagctgtgtggcccccagaatttacatagaagt
ggctgatgccattcgttctacagtgagcatccctgacatttttgtcacag
cctactagatgtagcctgggtcttctaccagtattatccatctattcttg
ccttctgtacattcacttcagaggctctcagggcttggatacaatgttca
ctattcatcaagccacaagattattttacatcatatccaatttttctact
cagacctgtctaccactacactcccagcttagaccaggaaatacacctgt
atatcacccagtcttcttctgtccaaatggcttcattacacagctatatc
caaagttttttattcaatctgcctcaatcttctgtttccactaccctcct
atggtcatccataagaacctcagtatgaacaaagggagagttccgcagtg
tcggatctcattggcagggaatattcaaccaattgaaggtcaggccag
gaattctctgtttagttctatatgccattttgtgtttgggttgtttgatt
ctgatattgtgataatgctcaggctagaagcctgagatcagtaggcagca
gcctcatccagttttcactagtgaaatatttcaatctagtaaagtattta
aagtcgttggtatctctatttgtttgattggtttaatttggcttgttttt
ttttttttttaatttggctttttggtccaggagtgggaagaaaatgtcaa
gctagagcacaaatttttataaaacttgctgtaggattcaaggcaaaatt
cagaggattttcttcagaaaagtgtttggctaatgacttgtagaattcat
agtaagacaattgctgaagaaattcacaactcttagtaccataacaataa
tataagacttgatactatactggggcttaggttaacacctatcttgcata
cttcacatcccagggctcagagttctttgctaaattccccatatgcaacc
agttaaaagagaatttacaacatgggaggttgactttccacaaatgcctt
gttactgccattgccagtgccatttttacattggcatcattacattacat
tttttttttacatttctgcatttctgcactcctaaacaaaagtaaatgat
gtgccattgacttttgccactacagttttactgctgagaatttgcctcag
gaccttatttagagacaaattcaatgggaagtgtgaaggagccgagtgca
tatagaaaatataaaataactttcgtgaatactagcgcttttctatcaca
gacggaactgatatttaagtgactagccattttgtttctcatcactaata
ttttctattcttccttcttaaaaaaacagtagtgggaaaagaaacgttct
gagcgttctaaaaacgcaagcttttcatttgtactaaaggcatttctcta
aagaaataatagaaattcagaaacttcctttgttgcttcataatgaatta
gtaaaagcccaaaaagatatattttgcaggacagatgaagacgatggctt
cctcaatccatcgatgaactatcacagacatctctgaaataattatttca
catgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_96977182_96978383
seq2: B6Ng01-108G24.b_43_1240 (reverse)

seq1  CTGGCTTGACCTTTCATATTGTTG-ATATT-CCTG-CAATGAGATCTGGA  47
      ||||| ||||| ||||  | |||| ||||| |||| ||||||||||  ||
seq2  CTGGCCTGACC-TTCAATTGGTTGAATATTCCCTGCCAATGAGATC-CGA  48

seq1  CA-TGCGGA---CTTCCTTTGTTCATACTGAGTTTCTTATGGATGA-CAT  92
      || ||||||   || ||||||||||||||||| ||||||||||||| |||
seq2  CACTGCGGAACTCTCCCTTTGTTCATACTGAGGTTCTTATGGATGACCAT  98

seq1  AGGGAGGGTAGTGGGAAACAGAAGATATGGAGGCAGATTGAATAAAAAAA  142
      | |||||||||| |||||||||||  || |||||||||||||| ||||||
seq2  A-GGAGGGTAGT-GGAAACAGAAG--ATTGAGGCAGATTGAAT-AAAAAA  143

seq1  CTTTGGATATAGCTTGGTTGTAATGAAGCCATTTGGACAGAAG-AGACTG  191
      ||||||||||||||    ||||||||||||||||||||||||| ||||||
seq2  CTTTGGATATAGCT---GTGTAATGAAGCCATTTGGACAGAAGAAGACTG  190

seq1  GGTTGATATACAGGTTGTATTTCCTGGTCTAAGCTGGGAGTGTAGTGGTA  241
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GG-TGATATACAGG-TGTATTTCCTGGTCTAAGCTGGGAGTGTAGTGGTA  238

seq1  GACAGGTCTGAGTAGAAAAATTGGATATGATGTAAAATAATCTTGTGGCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTCTGAGTAGAAAAATTGGATATGATGTAAAATAATCTTGTGGCT  288

seq1  TGATGAATAGTGAACATTGTATTCCAAGCCCTGAGAGCCTCTGAAGTGAA  341
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGATGAATAGTGAACATTGTA-TCCAAGCCCTGAGAGCCTCTGAAGTGAA  337

seq1  TGTACAGAAGGCAAGAATAGATGGATAATACTGGTAGAAGACCCAGGCTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGAAGGCAAGAATAGATGGATAATACTGGTAGAAGACCCAGGCTA  387

seq1  CATCTAGTAGGCTGTGACAAAAATGTCAGGGATGCTCACTGTAGAACGAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTAGGCTGTGACAAAAATGTCAGGGATGCTCACTGTAGAACGAA  437

seq1  TGGCATCAGCCACTTCTATGTAAATTCTGGGGGCCACACAGCTGCAAAGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCAGCCACTTCTATGTAAATTCTGGGGGCCACACAGCTGCAAAGG  487

seq1  CATCTCCTGCGGAAGGATCTAATTGAAGACTGCCTGAGAGACCAAGGATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTGCGGAAGGATCTAATTGAAGACTGCCTGAGAGACCAAGGATT  537

seq1  GCTGATGAAGACAATGCCAGCCAATTGGGAACTGCTGTTTAGAAAAGATG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAAGACAATGCCAGCCAATTGGGAACTGCTGTTTAGAAAAGATG  587

seq1  TTTTCTTGGGACCAATGAGGAGTGGGAGGAGGGTATTAAAGAAGCTCACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGGGACCAATGAGGAGTGGGAGGAGGGTATTAAAGAAGCTCACA  637

seq1  GAAGCATTCAGATGAGCTTGCTTCCAGCCCTTCTCAACCCCTCCAGGAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTCAGATGAGCTTGCTTCCAGCCCTTCTCAACCCCTCCAGGAGT  687

seq1  CTACATCATTGACTCCATGCTACCTCATCTCTAACCCCAAGAATAAGTAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCATTGACTCCATGCTACCTCATCTCTAACCCCAAGAATAAGTAG  737

seq1  AGTCAGGCATTGACTAATCCAGGGCATAGGCAGCATCTCACCAGACTAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCATTGACTAATCCAGGGCATAGGCAGCATCTCACCAGACTAGT  787

seq1  CCCTGGAGGAGGGCATGGGATTTGGGGGTAGGGGTTGGAGTGGTGGAAGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGGAGGGCATGGGATTTGGGGGTAGGGGTTGGAGTGGTGGAAGC  837

seq1  CTTATAAAGATTTCTGTATGCGAATACAGGCAAGACAAGTCTGGAAAAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAGATTTCTGTATGCGAATACAGGCAAGACAAGTCTGGAAAAAG  887

seq1  CCTAAAAGGAGGTGTTGGGGCTAGCAGATTGTGTTATGTTGAATCATTAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGGAGGTGTTGGGGCTAGCAGATTGTGTTATGTTGAATCATTAA  937

seq1  TGCATGTCTGGGATGAAGTTAACCTGATCATCAAGGATATTCTTTTTTGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCTGGGATGAAGTTAACCTGATCATCAAGGATATTCTTTTTTGT  987

seq1  CTGTTCTTAGATATGGTTTGGAAGAATTTTGTTGAGAATTTTTGCAACTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTAGATATGGTTTGGAAGAATTTTGTTGAGAATTTTTGCAACTG  1037

seq1  TGTTTATAAATGATTTCGCTCTTTTGTGTAGTTTGGTATCAGCGTAGTAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAAATGATTTCGCTCTTTTGTGTAGTTTGGTATCAGCGTAGTAG  1087

seq1  TGGTTTCATGAAAAGAATTAGAGAATGTTCCTTCAGTTTATATTTTGCAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCATGAAAAGAATTAGAGAATGTTCCTTCAGTTTATATTTTGCAA  1137

seq1  AGTAATTTGAAGGAGTGTTATCATTAATTTTTCATTGAAGGTCTCACAGA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTGAAGGAGTGTTATCATTAATTTTTCATTGAAGGTCTCACAGA  1187

seq1  ACATTGAATTC  1202
      |||||||||||
seq2  ACATTGAATTC  1198

seq1: chr4_96838318_96839414
seq2: B6Ng01-108G24.g_69_1175

seq1  GAATTCTCTGTTTAGTTCTATATGCCATTTTGTGTTTGGGTTGTTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGTTCTATATGCCATTTTGTGTTTGGGTTGTTTGATT  50

seq1  CTGATATTGTGATAATGCTCAGGCTAGAAGCCTGAGATCAGTAGGCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTGTGATAATGCTCAGGCTAGAAGCCTGAGATCAGTAGGCAGCA  100

seq1  GCCTCATCCAGTTTTCACTAGTGAAATATTTCAATCTAGTAAAGTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATCCAGTTTTCACTAGTGAAATATTTCAATCTAGTAAAGTATTTA  150

seq1  AAGTCGTTGGTATCTCTATTTGTTTGATTGGTTTAATTTGGCTTGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGTTGGTATCTCTATTTGTTTGATTGGTTTAATTTGGCTTGTTTTT  200

seq1  TTTTTTTTTTAATTTGGCTTTTTGGTCCAGGAGTGGGAAGAAAATGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAATTTGGCTTTTTGGTCCAGGAGTGGGAAGAAAATGTCAA  250

seq1  GCTAGAGCACAAATTTTTATAAAACTTGCTGTAGGATTCAAGGCAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCACAAATTTTTATAAAACTTGCTGTAGGATTCAAGGCAAAATT  300

seq1  CAGAGGATTTTCTTCAGAAAAGTGTTTGGCTAATGACTTGTAGAATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATTTTCTTCAGAAAAGTGTTTGGCTAATGACTTGTAGAATTCAT  350

seq1  AGTAAGACAATTGCTGAAGAAATTCACAACTCTTAGTACCATAACAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACAATTGCTGAAGAAATTCACAACTCTTAGTACCATAACAATAA  400

seq1  TATAAGACTTGATACTATACTGGGGCTTAGGTTAACACCTATCTTGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACTTGATACTATACTGGGGCTTAGGTTAACACCTATCTTGCATA  450

seq1  CTTCACATCCCAGGGCTCAGAGTTCTTTGCTAAATTCCCCATATGCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATCCCAGGGCTCAGAGTTCTTTGCTAAATTCCCCATATGCAACC  500

seq1  AGTTAAAAGAGAATTTACAACATGGGAGGTTGACTTTCCACAAATGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAGAGAATTTACAACATGGGAGGTTGACTTTCCACAAATGCCTT  550

seq1  GTTACTGCCATTGCCAGTGCCATTTTTACATTGGCATCATTACATTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGCCATTGCCAGTGCCATTTTTACATTGGCATCATTACATTACAT  600

seq1  TTTTTTTTTACATTTCTGCATTTCTGCACTCCTAAACAAAAGTAAATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTACATTTCTGCATTTCTGCACTCCTAAACAAAAGTAAATGAT  650

seq1  GTGCCATTGACTTTTGCCACTACAGTTTTACTGCTGAGAATTTGCCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTGACTTTTGCCACTACAGTTTTACTGCTGAGAATTTGCCTCAG  700

seq1  GACCTTATTTAGAGACAAATTCAATGGGAAGTGTGAAGGAGCCGAGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTATTTAGAGACAAATTCAATGGGAAGTGTGAAGGAGCCGAGTGCA  750

seq1  TATAGAAAATATAAAATAACTTTCGTGAATACTAGCGCTTTTCTATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAATATAAAATAACTTTCGTGAATACTAGCGCTTTTCTATCACA  800

seq1  GAC-GAACTGATATGT-AGTGACTAGCCATTTTGTTTCTCATCACTAATA  848
      ||| |||||||||| | |||||||||||||||||||||||||||||||||
seq2  GACGGAACTGATATTTAAGTGACTAGCCATTTTGTTTCTCATCACTAATA  850

seq1  TTTTCTATTC-TCCTTCTTAAAAAAACAGTAGTGG--AAAGAAACGTTCT  895
      |||||||||| ||||||||||||||||||||||||  |||||||||||||
seq2  TTTTCTATTCTTCCTTCTTAAAAAAACAGTAGTGGGAAAAGAAACGTTCT  900

seq1  GAGCGTTCTAAAAACGCAAGCTTTTCATTTGTACTAAA-GCATTTCCCTA  944
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  GAGCGTTCTAAAAACGCAAGCTTTTCATTTGTACTAAAGGCATTTCTCTA  950

seq1  AAG-AACAATAGGAATCCAG-AACTTCCTTGTATGCTTCATAATGAATTA  992
      ||| || ||||| ||| ||| |||||||||   |||||||||||||||||
seq2  AAGAAATAATAGAAATTCAGAAACTTCCTTTGTTGCTTCATAATGAATTA  1000

seq1  GTAAAAGCCCAAAAAG--ATAATTTGCAGGACAG-TGAGAACGATGGC-T  1038
      ||||||||||||||||  ||| |||||||||||| |||  |||||||| |
seq2  GTAAAAGCCCAAAAAGATATATTTTGCAGGACAGATGAAGACGATGGCTT  1050

seq1  CCTCAATCACATCAATGATCTAATCACCAGCATCTCTGAATATATTATTT  1088
      |||||||| |||| |||| || |||||   ||||||||||   |||||||
seq2  CCTCAATC-CATCGATGAACT-ATCACAGACATCTCTGAAATAATTATTT  1098

seq1  CACATGTTA  1097
      |||||||||
seq2  CACATGTTA  1107