BAC Information

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BAC

Clone NameB6Ng01-109F24
Chromosome4 (Build37)
Map Location 134,938,779 - 135,093,598
singlet/doubletdoublet
Overlap geneA330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik
Upstream geneLOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1
Downstream geneGrhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109F24.bB6Ng01-109F24.g
ACCDH916300DH916301
length282888
definitionDH916300|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F24, 5' end.DH916301|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,093,317 - 135,093,598)(134,938,779 - 134,939,658)
sequence
catttaattgaatctgtctcttcgtcccttccctcctccttgctcatgtc
tgccccccgcccccaccccaggaagagagccagtcaggcagccagtccag
atgggaagcccaggaggcagagttctcagaaaatgtcaaggaaggggcct
tgggaggagagaagcccaggcaggtgttttggaaggcaatcaggggccag
aggagggaaggggaggctatgaggatgtcatttaggaaagtgacagacat
tatcagtgtctgggataggggagggtgggagg
gaattctgtcattacaacccaggcctccttaccttacctgtctttcacag
ttcctgtttggacctgttccagtagagcttttccactggtcttgtgggaa
ttagattagatgggaactgtagctgggtgtgatggcacacacccaggaac
cccaccactggggaggatcgtgagttggaggccagcctggagctagaagg
ctatgtctaacaacaacaacaacaaccacctaagccgcagtgtctggggt
atagctcactggtacaatgcgtccctggcctgccctagggtcatgccctg
ggtgtagtggtaaacctagcactctccgacacagagctataggcaggaga
atcgggagacaagggcacgtacctggggtgagatgtctgtctgaagggag
tagggagagaggattctaccagccacggacactccccactctctggacag
acagacaggtgactgatcggctgctggggttaggtagatgagctacagcg
gaatctaagctccccgccgaggccaagggagagatcttcactttctactt
caacaccggcccccccagtgctttcctcatctgccacatccttccatgag
aaccccaggaggcagctgctcctgtgtccacagccttctccttttacaat
caggaaactgaggaccaagagagccttcgggatgcatgtagagagggaag
cgtgagcaggcacagcaacagcaaagaggaggcataaataactcgccctt
gacctacagtacaatcaggcctgtcgaggacccctccaccccgttttctc
ttttagtgccctgctgccggggcagtatttgctcccatgaagcgagaaga
ctcggaagttactggagtcacttactgaaagcaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135093317_135093598
seq2: B6Ng01-109F24.b_53_334 (reverse)

seq1  CCTCCCACCCTCCCCTATCCCAGACACTGATAATGTCTGTCACTTTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACCCTCCCCTATCCCAGACACTGATAATGTCTGTCACTTTCCTA  50

seq1  AATGACATCCTCATAGCCTCCCCTTCCCTCCTCTGGCCCCTGATTGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATCCTCATAGCCTCCCCTTCCCTCCTCTGGCCCCTGATTGCCTT  100

seq1  CCAAAACACCTGCCTGGGCTTCTCTCCTCCCAAGGCCCCTTCCTTGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACACCTGCCTGGGCTTCTCTCCTCCCAAGGCCCCTTCCTTGACAT  150

seq1  TTTCTGAGAACTCTGCCTCCTGGGCTTCCCATCTGGACTGGCTGCCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGAACTCTGCCTCCTGGGCTTCCCATCTGGACTGGCTGCCTGAC  200

seq1  TGGCTCTCTTCCTGGGGTGGGGGCGGGGGGCAGACATGAGCAAGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTTCCTGGGGTGGGGGCGGGGGGCAGACATGAGCAAGGAGGAG  250

seq1  GGAAGGGACGAAGAGACAGATTCAATTAAATG  282
      ||||||||||||||||||||||||||||||||
seq2  GGAAGGGACGAAGAGACAGATTCAATTAAATG  282

seq1: chr4_134938779_134939658
seq2: B6Ng01-109F24.g_64_951

seq1  GAATTCTGTCATTACAACCCAGGCCTCCTTACCTTACCTGTCTTTCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATTACAACCCAGGCCTCCTTACCTTACCTGTCTTTCACAG  50

seq1  TTCCTGTTTGGACCTGTTCCAGTAGAGCTTTTCCACTGGTCTTGTGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTGGACCTGTTCCAGTAGAGCTTTTCCACTGGTCTTGTGGGAA  100

seq1  TTAGATTAGATGGGAACTGTAGCTGGGTGTGATGGCACACACCCAGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTAGATGGGAACTGTAGCTGGGTGTGATGGCACACACCCAGGAAC  150

seq1  CCCACCACTGGGGAGGATCGTGAGTTGGAGGCCAGCCTGGAGCTAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACTGGGGAGGATCGTGAGTTGGAGGCCAGCCTGGAGCTAGAAGG  200

seq1  CTATGTCTAACAACAACAACAACAACCACCTAAGCCGCAGTGTCTGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTAACAACAACAACAACAACCACCTAAGCCGCAGTGTCTGGGGT  250

seq1  ATAGCTCACTGGTACAATGCGTCCCTGGCCTGCCCTAGGGTCATGCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCACTGGTACAATGCGTCCCTGGCCTGCCCTAGGGTCATGCCCTG  300

seq1  GGTGTAGTGGTAAACCTAGCACTCTCCGACACAGAGCTATAGGCAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGTGGTAAACCTAGCACTCTCCGACACAGAGCTATAGGCAGGAGA  350

seq1  ATCGGGAGACAAGGGCACGTACCTGGGGTGAGATGTCTGTCTGAAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGAGACAAGGGCACGTACCTGGGGTGAGATGTCTGTCTGAAGGGAG  400

seq1  TAGGGAGAGAGGATTCTACCAGCCACGGACACTCCCCACTCTCTGGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGAGAGGATTCTACCAGCCACGGACACTCCCCACTCTCTGGACAG  450

seq1  ACAGACAGGTGACTGATCGGCTGCTGGGGTTAGGTAGATGAGCTACAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGTGACTGATCGGCTGCTGGGGTTAGGTAGATGAGCTACAGCG  500

seq1  GAATCTAAGCTCCCCGCCGAGGCCAAGGGAGAGATCTTCAC-TTCTACTT  549
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATCTAAGCTCCCCGCCGAGGCCAAGGGAGAGATCTTCACTTTCTACTT  550

seq1  CAACACCGGCCCCCCCAGTGC-TTCCTCATCTGCCACATCC-TCCATGAG  597
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CAACACCGGCCCCCCCAGTGCTTTCCTCATCTGCCACATCCTTCCATGAG  600

seq1  AACCCCAGGAGGCAGCTGCTCCTGTGTCCACAGCCTTCTCC-TTTACAAT  646
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACCCCAGGAGGCAGCTGCTCCTGTGTCCACAGCCTTCTCCTTTTACAAT  650

seq1  CAGGGAAACTGAGGACCAAGAGAGCC-TCGGGATGCATGTAGAGA-GGAA  694
      || ||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  CA-GGAAACTGAGGACCAAGAGAGCCTTCGGGATGCATGTAGAGAGGGAA  699

seq1  GCGTGGAGCAGGGTACAGCAACAGCAAAGA-GAGGCATAAAATAACTCGC  743
      |||| ||||| || |||||||||||||||| ||||||| |||||||||||
seq2  GCGT-GAGCA-GGCACAGCAACAGCAAAGAGGAGGCAT-AAATAACTCGC  746

seq1  CCTTGACCCACAGTAACAACCAGGCCTGTCGAGAACCC--CCACCCCG-T  790
      |||||||| ||||| |||| ||||||||||||| ||||  |||||||| |
seq2  CCTTGACCTACAGT-ACAATCAGGCCTGTCGAGGACCCCTCCACCCCGTT  795

seq1  TTCTCTTTTAGTGCCCTGCTGCCGTGGCAGTA-TTGCTCCCATGAAGCGA  839
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  TTCTCTTTTAGTGCCCTGCTGCCGGGGCAGTATTTGCTCCCATGAAGCGA  845

seq1  GAGAACTCGG-AGTTACT-GAGTCACTTACTGAAAGCAAGAGG  880
      ||  |||||| ||||||| |||||||||||||||||||||| |
seq2  GAAGACTCGGAAGTTACTGGAGTCACTTACTGAAAGCAAGATG  888