BAC Information

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BAC

Clone NameB6Ng01-109H14
Chromosome4 (Build37)
Map Location 78,969,989 - 79,089,972
singlet/doubletdoublet
Overlap geneLOC667922
Upstream geneLOC100040026, LOC100040036
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109H14.bB6Ng01-109H14.g
ACCDH916372DH916373
length1,1221,063
definitionDH916372|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H14, 5' end.DH916373|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,088,827 - 79,089,972)(78,969,989 - 78,971,046)
sequence
gaattcatagaaagtattcatctcaaggtgagccaaaggtggtgttgtaa
gagtgtgcattatctaaccatccactgacttatgcaaacaaaagggggga
tttgcaacatatgtaggataattatcctttctttacatttggtatgcaaa
atattatgaactcatttttctttgggcccatagaatgattgacagtgttt
gaataacaatccaaacatgaagtgctttgctaatgcattcctcttacatt
tatggtgttacaaatggaattgcttaacaatgacccatttgcctcctctc
agcaaacacacagatgtttatccttctagcagcttggtttgcttccctgg
caggatgcaagaagcattttacaagccaagctgacatggaagcagatacc
cattcaatatattttgctttccttttcttttcacctcaacctacactcta
aatgaaataggcatcctctccctcaaaatttgaaaagtccttaatttgga
tattatcactatggctatccatgtgtaggatttttattgctgcaatgaga
taacatgaacaagaagcacgtttggagacacagaaggaagtctagacagg
aactcaaacagggcaagaacctggaggcagtagtggattcagagactatg
catactacatgctccctgggattgctcactgtgacaacccacaatcaatc
acccattaagaaaataccctacaggtctaactgtaacctgatcttattga
ggtatttcctctattgaggttcacttacctccagtaactctagcttctgt
tgactacccaccacaacttacccttactatttgatatacagagtcataat
tattaagctgcaaactttcctttcttattcatctccaagatctcacatta
aaaacataagtaattttttttcttttccattttgtattaggtatttagct
catttacatttccatgctataccaaaagtccccatagcacacactcactc
cctaccaccactccccttttggcctggcgttccctgtactgagcatataa
gtttgctgtcatgggcctctcttcaaggatggcggactagccatcttgat
actatgcagctagagtcagagc
gaattctggcctagtgacagcctgctcgatcaatccaagtgcattgtgtt
ctgaagtgaagccaaggcaaagcagattatgatttgccattttggtcaca
gatgattttagtagtttctagtagccatatcagatttgtgtatgcagaat
agttctcattattgccttctctcccaaatcagccatttgtatgccttgct
gtcttatgaaagaggtgctgcctggaagacattttattctggaaacttga
agtcatgggcacagttcaagctgatgaattgttatattcaacttgtcatc
tgttacattactctctttttaactgtaaactcagttaatgtgtattccta
ctctgctcccttctaaactactttgtgctttttcattatgttttctccag
tgctttgatcctgcatatcttattttttattttcttgcctctacttcaaa
ccaaactataatttaaactcaaaaaccaacacacaaaaacaactccaaca
tatactgaagtagtccctatgtgtagcatgtccttccttatttttgaata
gccatacaacacaaatttgatatttcacacttttgctctgaatgtgaaaa
tatttattactctacgtggaaaaatagatcttgtgtggcgatttctaccc
atttactatagtactgggttatacccaaagcttgagttttccagtgagtt
tctttccattccgtcggcattgattcctggaatcatacctagttttcact
tttaaagacacgaatgttttgccatatttctactattgctaatgtgttga
atctaatttatttttaatatatactttagctagtgctttgatattcataa
aatgtttttttttgttcaatttcacctctctcctggtcctcctaagtcaa
acttcttacctgaaaagatacctttgtgtcctttatttaaaagaacatca
cagtccaaattgtagttacctttcactacagatactacattcttagagaa
aattcctcttttacttttattggctagggataggtcctaggctggggggg
ggggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79088827_79089972
seq2: B6Ng01-109H14.b_46_1167 (reverse)

seq1  GCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATC  50
      |||| |||||||||||||||| |||||  ||||||| |||||| ||||||
seq2  GCTC-TGACTCTAGCTGCATA-GTATC--AAGATGG-CTAGTCCGCCATC  45

seq1  CCTGGAAAGAGAGGCCCATTGGACAGGCAAACTTTATATGCCTCAGTACA  100
      | ||  |||||||||||||  |||| |||||| ||||||| |||||||||
seq2  CTTG--AAGAGAGGCCCAT--GACA-GCAAAC-TTATATG-CTCAGTACA  88

seq1  GGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGAGG  150
       |||||||||| ||||||||  |||||||||   |||| |||||||   |
seq2  -GGGAACGCCA-GGCCAAAA--GGGGAGTGG--TGGTA-GGGAGTG--AG  129

seq1  TGTGTGGCTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCT  200
      ||||| ||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TGTGT-GCTAT-GGGGACTTTTGGTATAGCA-TGGAAATGTAAATGAGCT  176

seq1  AAATACCTAATACAAAATGGAAAAGAAAAAAAATTACTTATGTTTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAATACAAAATGGAAAAGAAAAAAAATTACTTATGTTTTTAAT  226

seq1  GTGAGATCTTGGAGATGAATAAGAAAGGAAAGTTTGCAGCTTAATAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATCTTGGAGATGAATAAGAAAGGAAAGTTTGCAGCTTAATAATTA  276

seq1  TGACTCTGTATATCAAATAGTAAGGGTAAGTTGTGGTGGGTAGTCAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGTATATCAAATAGTAAGGGTAAGTTGTGGTGGGTAGTCAACAG  326

seq1  AAGCTAGAGTTACTGGAGGTAAGTGAACCTCAATAGAGGAAATACCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAGTTACTGGAGGTAAGTGAACCTCAATAGAGGAAATACCTCAA  376

seq1  TAAGATCAGGTTACAGTTAGACCTGTAGGGTATTTTCTTAATGGGTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCAGGTTACAGTTAGACCTGTAGGGTATTTTCTTAATGGGTGATT  426

seq1  GATTGTGGGTTGTCACAGTGAGCAATCCCAGGGAGCATGTAGTATGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGGGTTGTCACAGTGAGCAATCCCAGGGAGCATGTAGTATGCATA  476

seq1  GTCTCTGAATCCACTACTGCCTCCAGGTTCTTGCCCTGTTTGAGTTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAATCCACTACTGCCTCCAGGTTCTTGCCCTGTTTGAGTTCCTG  526

seq1  TCTAGACTTCCTTCTGTGTCTCCAAACGTGCTTCTTGTTCATGTTATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTTCCTTCTGTGTCTCCAAACGTGCTTCTTGTTCATGTTATCTC  576

seq1  ATTGCAGCAATAAAAATCCTACACATGGATAGCCATAGTGATAATATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGCAATAAAAATCCTACACATGGATAGCCATAGTGATAATATCCA  626

seq1  AATTAAGGACTTTTCAAATTTTGAGGGAGAGGATGCCTATTTCATTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGACTTTTCAAATTTTGAGGGAGAGGATGCCTATTTCATTTAGA  676

seq1  GTGTAGGTTGAGGTGAAAAGAAAAGGAAAGCAAAATATATTGAATGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGTTGAGGTGAAAAGAAAAGGAAAGCAAAATATATTGAATGGGTA  726

seq1  TCTGCTTCCATGTCAGCTTGGCTTGTAAAATGCTTCTTGCATCCTGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCATGTCAGCTTGGCTTGTAAAATGCTTCTTGCATCCTGCCAG  776

seq1  GGAAGCAAACCAAGCTGCTAGAAGGATAAACATCTGTGTGTTTGCTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAACCAAGCTGCTAGAAGGATAAACATCTGTGTGTTTGCTGAGA  826

seq1  GGAGGCAAATGGGTCATTGTTAAGCAATTCCATTTGTAACACCATAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAATGGGTCATTGTTAAGCAATTCCATTTGTAACACCATAAATG  876

seq1  TAAGAGGAATGCATTAGCAAAGCACTTCATGTTTGGATTGTTATTCAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAATGCATTAGCAAAGCACTTCATGTTTGGATTGTTATTCAAAC  926

seq1  ACTGTCAATCATTCTATGGGCCCAAAGAAAAATGAGTTCATAATATTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAATCATTCTATGGGCCCAAAGAAAAATGAGTTCATAATATTTTG  976

seq1  CATACCAAATGTAAAGAAAGGATAATTATCCTACATATGTTGCAAATCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAAATGTAAAGAAAGGATAATTATCCTACATATGTTGCAAATCCC  1026

seq1  CCCTTTTGTTTGCATAAGTCAGTGGATGGTTAGATAATGCACACTCTTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGTTTGCATAAGTCAGTGGATGGTTAGATAATGCACACTCTTAC  1076

seq1  AACACCACCTTTGGCTCACCTTGAGATGAATACTTTCTATGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACCTTTGGCTCACCTTGAGATGAATACTTTCTATGAATTC  1122

seq1: chr4_78969989_78971046
seq2: B6Ng01-109H14.g_68_1130

seq1  GAATTCTGGCCTAGTGACAGCCTGCTCGATCAATCCAAGTGCATTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCTAGTGACAGCCTGCTCGATCAATCCAAGTGCATTGTGTT  50

seq1  CTGAAGTGAAGCCAAGGCAAAGCAGATTATGATTTGCCATTTTGGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGAAGCCAAGGCAAAGCAGATTATGATTTGCCATTTTGGTCACA  100

seq1  GATGATTTTAGTAGTTTCTAGTAGCCATATCAGATTTGTGTATGCAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTAGTAGTTTCTAGTAGCCATATCAGATTTGTGTATGCAGAAT  150

seq1  AGTTCTCATTATTGCCTTCTCTCCCAAATCAGCCATTTGTATGCCTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATTATTGCCTTCTCTCCCAAATCAGCCATTTGTATGCCTTGCT  200

seq1  GTCTTATGAAAGAGGTGCTGCCTGGAAGACATTTTATTCTGGAAACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGAAAGAGGTGCTGCCTGGAAGACATTTTATTCTGGAAACTTGA  250

seq1  AGTCATGGGCACAGTTCAAGCTGATGAATTGTTATATTCAACTTGTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGGCACAGTTCAAGCTGATGAATTGTTATATTCAACTTGTCATC  300

seq1  TGTTACATTACTCTCTTTTTAACTGTAAACTCAGTTAATGTGTATTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATTACTCTCTTTTTAACTGTAAACTCAGTTAATGTGTATTCCTA  350

seq1  CTCTGCTCCCTTCTAAACTACTTTGTGCTTTTTCATTATGTTTTCTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCCCTTCTAAACTACTTTGTGCTTTTTCATTATGTTTTCTCCAG  400

seq1  TGCTTTGATCCTGCATATCTTATTTTTTATTTTCTTGCCTCTACTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGATCCTGCATATCTTATTTTTTATTTTCTTGCCTCTACTTCAAA  450

seq1  CCAAACTATAATTTAAACTCAAAAACCAACACACAAAAACAACTCCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTATAATTTAAACTCAAAAACCAACACACAAAAACAACTCCAACA  500

seq1  TATACTGAAGTAGTCCCTATGTGTAGCATGTCCTTCCTTATTTTTGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGAAGTAGTCCCTATGTGTAGCATGTCCTTCCTTATTTTTGAATA  550

seq1  GCCATACAACACAAATTTGATATTTCACACTTTTGCTCTGAATGTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACAACACAAATTTGATATTTCACACTTTTGCTCTGAATGTGAAAA  600

seq1  TATTTATTACTCTACGTGGAAAAATAGATCTTGTGTGGCGATTTCTACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTACTCTACGTGGAAAAATAGATCTTGTGTGGCGATTTCTACCC  650

seq1  ATTTACTATAGTACTGGGTTATACCCAAAGCTTGAGTTTTCCAGTGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTATAGTACTGGGTTATACCCAAAGCTTGAGTTTTCCAGTGAGTT  700

seq1  TCTTTCCATTCCGTCGGCATTGATTCCTGGAATCATACCTAGTTTTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCATTCCGTCGGCATTGATTCCTGGAATCATACCTAGTTTTCACT  750

seq1  TTTAAAGACACGAATGTTTTGCCATATTTCTACTATTGCTAATGTGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACACGAATGTTTTGCCATATTTCTACTATTGCTAATGTGTTGA  800

seq1  ATCTAATTTATTTTTAATATATACTTTAGCTAGTGCTTTGATAATTCATA  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCTAATTTATTTTTAATATATACTTTAGCTAGTGCTTTGAT-ATTCATA  849

seq1  AAATGTTTTTTTTTGTTCAATTTCACCTCTCTCCTGGTCCTCCTAAGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATGTTTTTTTTTGTTCAATTTCACCTCTCTCCTGGTCCTCCTAAGTC-  898

seq1  AAACTTCTTACCTGAAAAGATACCTTTGTGTCCTTTTATTTAAAAGAAAC  950
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  AAACTTCTTACCTGAAAAGATACCTTTGTGTCC-TTTATTTAAAAG-AAC  946

seq1  ATCACAAGTCCAAATTGTAGTTACCTTTCACTACCAGATACTACATTCTT  1000
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATCAC-AGTCCAAATTGTAGTTACCTTTCACTA-CAGATACTACATTCTT  994

seq1  AGAGAAAATT-CTC-TCTACCTCTATTGGCTAGGGATAGGTCCTAGGCTT  1048
      |||||||||| ||| | ||| | ||||||||||||||||||||||||| |
seq2  AGAGAAAATTCCTCTTTTACTTTTATTGGCTAGGGATAGGTCCTAGGC-T  1043

seq1  GGGGGTGGGG----------  1058
      ||||| ||||          
seq2  GGGGGGGGGGGGGGGTGGGG  1063