BAC Information

Click to search

BAC

Clone NameB6Ng01-109I16
Chromosome4 (Build37)
Map Location 101,848,209 - 101,998,472
singlet/doubletdoublet
Overlap genePde4b
Upstream geneJak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739
Downstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109I16.bB6Ng01-109I16.g
ACCDH916423DH916424
length1,0451,004
definitionDH916423|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I16, 5' end.DH916424|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,997,418 - 101,998,472)(101,848,209 - 101,849,233)
sequence
gaattctttattctaagaaggcatctctttagatgcatggctctgaatgt
ccttgttaccgtgacaacggtctttttctttctcatctcctaattcattt
gctgatcaatactttgcgaaaattgtttctatggaaatgtgaatctgttt
accttttccctagcctaaatatccaccatctccacaggtaggaaaaaatt
tgacattctcttggccaatatgaacttagagtagccagcactatggagac
tattttcaaatgatttactggaagattttgcattatatcttccgaccacc
ctcagattctcactctctctactgattctctgacattcttttgaacactg
ataaagccattttgccctctccagcaatggagatctgtcacctccactct
cagagtgttttctctgtctagtttgactttaacaacaacggcaagagcac
acccatctgtcccaactgaaaatcctcacaggctgaaccccactccacat
ttcccagcactcaggtgacacccctggacttgattaagagtaggtggagg
tgtctgactccaaagggattggcaatctcgttctgttgtacacacatgag
acagatcatttaaaggagtgagtatatagacgctctgtgtctccatgtgt
aggtttagcattttctctggttgttttgtcagtcaaacctgtatagaaac
ctgaaaagggactaaggacaatataggtgtgaagtatgtagatttcaatt
tcactgtgtaagccaacataaaagcacacagtacacacaagaacacccat
acacacacacacacacacacacacacacacacacacacatacacacaggt
aaaggttagatggcagagaataaggatcggagagttttagggtataaggg
gagcaaatctgtttttttaagtatttattttaattatgtgtatgtataca
aagcactgttgcagatgaggtagaagatgtgggatcttctggagcagagt
tccagttcaagtgcctgacctgccctagataaatgttagggaaca
gaattccattagattaataaactttacagttatgaagctccaaatctttt
gtctggtatttgagatcaatggccttaggtttatttagtatgcaagtatt
cctagaaggtcttagagatgaaagtgaagatggatattcaggtcttctgt
gtccttgttcctttccacacattatgttagatatcagccccaactaaaaa
aaatattggtttcttttttctttctttctttctttctttctttctttctt
tctttctttcttttttttttttgcactagacttcatgccaactattttat
aaagctaaggctttatttttatttccatttttattctatttattttcttt
taattttatttttatttaatttttttttttttagttttctgagttaagaa
acaacagaaagtcatgctcttgctttcttattgctcttacatcataagga
aataatctgctctatggatattatgaaactccgctgcatggggcattaag
ctagaaggggccatagcaactgaaacaccaagacattccacatcagctaa
gtagttctatacacaaatgaagtctggaacatctctctgtcccggtagct
gctgatgccagtcatcactctggcaaccccttaactctcttctaaacaca
ttctgagtgaagacaggaaggaatgtaaagaagtgttagagaagtgagct
attggtctactgataatgaattgtcatgtctatatagtggtgtggaggta
tcttcagtaaagtggaggaactctattccaggaagcaaaatgaaggagtt
taatgcaatgaactgatttaagcttttagaaaatgaaaatattgaggagc
ttaggtagctcaagttttgctgatgcaagaatcagctagcttcttttttt
tttttattggatatttcttattacatttcaatggtaccccttctagtctc
cctttggaactcctatcccctcctcctcctctggtctccacttcccacca
ctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_101997418_101998472
seq2: B6Ng01-109I16.b_48_1092 (reverse)

seq1  TGTTCCCTAACATCTATCTAGGGCAGGTTCCAGCCACCTGGAACTGGAAC  50
      ||||||||||||| ||||||||||||||  ||| || || ||||||||||
seq2  TGTTCCCTAACATTTATCTAGGGCAGGT--CAGGCA-CTTGAACTGGAAC  47

seq1  TTCTGGCTCCAGAAGATCCCACATCTTCTAACCTCATCTGGCAACAGTGC  100
       ||| |||||||||||||||||||||||| ||||||||| ||||||||||
seq2  -TCT-GCTCCAGAAGATCCCACATCTTCT-ACCTCATCT-GCAACAGTGC  93

seq1  TTTTGTATACATACACATAATTAAAAATAAAATACTTAAAAAAACAGATT  150
       |||||||||||||||||||||||||   |||||||||||||||||||||
seq2  -TTTGTATACATACACATAATTAAAA--TAAATACTTAAAAAAACAGATT  140

seq1  TGCTCCCCTTATACCCTAAAACTCTCCGATCCTTATTCTCTGCCATCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCTTATACCCTAAAACTCTCCGATCCTTATTCTCTGCCATCTAA  190

seq1  CCTTTACCTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  240

seq1  TGTGTATGGGTGTTCTTGTGTGTACTGTGTGCTTTTATGTTGGCTTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGGGTGTTCTTGTGTGTACTGTGTGCTTTTATGTTGGCTTACAC  290

seq1  AGTGAAATTGAAATCTACATACTTCACACCTATATTGTCCTTAGTCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATTGAAATCTACATACTTCACACCTATATTGTCCTTAGTCCCTT  340

seq1  TTCAGGTTTCTATACAGGTTTGACTGACAAAACAACCAGAGAAAATGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTTCTATACAGGTTTGACTGACAAAACAACCAGAGAAAATGCTA  390

seq1  AACCTACACATGGAGACACAGAGCGTCTATATACTCACTCCTTTAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACACATGGAGACACAGAGCGTCTATATACTCACTCCTTTAAATGA  440

seq1  TCTGTCTCATGTGTGTACAACAGAACGAGATTGCCAATCCCTTTGGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCATGTGTGTACAACAGAACGAGATTGCCAATCCCTTTGGAGTC  490

seq1  AGACACCTCCACCTACTCTTAATCAAGTCCAGGGGTGTCACCTGAGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTCCACCTACTCTTAATCAAGTCCAGGGGTGTCACCTGAGTGCT  540

seq1  GGGAAATGTGGAGTGGGGTTCAGCCTGTGAGGATTTTCAGTTGGGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGTGGAGTGGGGTTCAGCCTGTGAGGATTTTCAGTTGGGACAGA  590

seq1  TGGGTGTGCTCTTGCCGTTGTTGTTAAAGTCAAACTAGACAGAGAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGCTCTTGCCGTTGTTGTTAAAGTCAAACTAGACAGAGAAAACA  640

seq1  CTCTGAGAGTGGAGGTGACAGATCTCCATTGCTGGAGAGGGCAAAATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGTGGAGGTGACAGATCTCCATTGCTGGAGAGGGCAAAATGGC  690

seq1  TTTATCAGTGTTCAAAAGAATGTCAGAGAATCAGTAGAGAGAGTGAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGTGTTCAAAAGAATGTCAGAGAATCAGTAGAGAGAGTGAGAAT  740

seq1  CTGAGGGTGGTCGGAAGATATAATGCAAAATCTTCCAGTAAATCATTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTGGTCGGAAGATATAATGCAAAATCTTCCAGTAAATCATTTGA  790

seq1  AAATAGTCTCCATAGTGCTGGCTACTCTAAGTTCATATTGGCCAAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTCCATAGTGCTGGCTACTCTAAGTTCATATTGGCCAAGAGAA  840

seq1  TGTCAAATTTTTTCCTACCTGTGGAGATGGTGGATATTTAGGCTAGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATTTTTTCCTACCTGTGGAGATGGTGGATATTTAGGCTAGGGAA  890

seq1  AAGGTAAACAGATTCACATTTCCATAGAAACAATTTTCGCAAAGTATTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAACAGATTCACATTTCCATAGAAACAATTTTCGCAAAGTATTGA  940

seq1  TCAGCAAATGAATTAGGAGATGAGAAAGAAAAAGACCGTTGTCACGGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAATGAATTAGGAGATGAGAAAGAAAAAGACCGTTGTCACGGTAA  990

seq1  CAAGGACATTCAGAGCCATGCATCTAAAGAGATGCCTTCTTAGAATAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACATTCAGAGCCATGCATCTAAAGAGATGCCTTCTTAGAATAAAG  1040

seq1  AATTC  1055
      |||||
seq2  AATTC  1045

seq1: chr4_101848209_101849233
seq2: B6Ng01-109I16.g_69_1072

seq1  GAATTCCATTAGATTAATAAACTTTACAGTTATGAAGCTCCAAATCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAGATTAATAAACTTTACAGTTATGAAGCTCCAAATCTTTT  50

seq1  GTCTGGTATTTGAGATCAATGGCCTTAGGTTTATTTAGTATGCAAGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTATTTGAGATCAATGGCCTTAGGTTTATTTAGTATGCAAGTATT  100

seq1  CCTAGAAGGTCTTAGAGATGAAAGTGAAGATGGATATTCAGGTCTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGGTCTTAGAGATGAAAGTGAAGATGGATATTCAGGTCTTCTGT  150

seq1  GTCCTTGTTCCTTTCCACACATTATGTTAGATATCAGCCCCAACTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTTCCTTTCCACACATTATGTTAGATATCAGCCCCAACTAAAAA  200

seq1  AAATATTGGTTTCTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGGTTTCTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  250

seq1  TCTTTCTTTCTTTTTTTTTTTTGCACTAGACTTCATGCCAACTATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTTTTTTTTTTGCACTAGACTTCATGCCAACTATTTTAT  300

seq1  AAAGCTAAGGCTTTATTTTTATTTCCATTTTTATTCTATTTATTTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAGGCTTTATTTTTATTTCCATTTTTATTCTATTTATTTTCTTT  350

seq1  TAATTTTATTTTTATTTAATTTTTTTTTTTTTAGTTTTCTGAGTTAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTTTTATTTAATTTTTTTTTTTTTAGTTTTCTGAGTTAAGAA  400

seq1  ACAACAGAAAGTCATGCTCTTGCTTTCTTATTGCTCTTACATCATAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAAAGTCATGCTCTTGCTTTCTTATTGCTCTTACATCATAAGGA  450

seq1  AATAATCTGCTCTATGGATATTATGAAACTCCGCTGCATGGGGCATTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTGCTCTATGGATATTATGAAACTCCGCTGCATGGGGCATTAAG  500

seq1  CTAGAAGGGGCCATAGCAACTGAAACACCAAGACATTCCACATCAGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGGGCCATAGCAACTGAAACACCAAGACATTCCACATCAGCTAA  550

seq1  GTAGTTCTATACACAAATGAAGTCTGGAACATCTCTCTGTCCCGGTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCTATACACAAATGAAGTCTGGAACATCTCTCTGTCCCGGTAGCT  600

seq1  GCTGATGCCAGTCATCACTCTGGCAACCCCTTAACTCTCTTCTAAACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGCCAGTCATCACTCTGGCAACCCCTTAACTCTCTTCTAAACACA  650

seq1  TTCTGAGTGAAGACAGGAAGGAATGTAAAGAAGTGTTAGAGAAGTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTGAAGACAGGAAGGAATGTAAAGAAGTGTTAGAGAAGTGAGCT  700

seq1  ATTGGTCTACTGATAATGAATTGTCATGTCTATATAGTGGTGTGGAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTACTGATAATGAATTGTCATGTCTATATAGTGGTGTGGAGGTA  750

seq1  TCTTCAGTAAAGTGGAGGAAACTCTATTCCAGGAAGCAAAATGAAGGAGT  800
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTTCAGTAAAGTGGAGG-AACTCTATTCCAGGAAGCAAAATGAAGGAGT  799

seq1  TTAATGCAATGAACTGATTATAAAGCTTTTAGATAATGAAAATATTGAGG  850
      ||||||||||||||||||  | ||||||||||| ||||||||||||||||
seq2  TTAATGCAATGAACTGAT--TTAAGCTTTTAGAAAATGAAAATATTGAGG  847

seq1  AGCTTAGGTAGCTCAAAGTTTTGCTGATTGCAAGAATCAGCTAGCTTCTT  900
      |||||||||||||| |||||||||||| |||||||||||||||||||| |
seq2  AGCTTAGGTAGCTC-AAGTTTTGCTGA-TGCAAGAATCAGCTAGCTTC-T  894

seq1  TTTTTTTTTTTATTGGATATTTTCTTTATTTACATTTCAAATGTTACCCC  950
      ||||||||||||||||||| ||||||   ||||||||| |||| ||||||
seq2  TTTTTTTTTTTATTGGATA-TTTCTT--ATTACATTTC-AATGGTACCCC  940

seq1  CTTTCTCAGTCTCCCTCTGGAAACTCCCTATCCCCTCCTCCCTCCTCCTG  1000
        |||| ||||||||| ||| |||| ||||||||||||| |||||| |||
seq2  --TTCT-AGTCTCCCTTTGG-AACT-CCTATCCCCTCCT-CCTCCT-CTG  983

seq1  GTTCCTCCACCTCCCCACCCACTCC  1025
      ||  |||||| ||||   |||||||
seq2  GT--CTCCACTTCCC--ACCACTCC  1004