BAC Information

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BAC

Clone NameB6Ng01-109I21
Chromosome4 (Build37)
Map Location 136,192,520 - 136,330,292
singlet/doubletdoublet
Overlap geneBC029684, Ephb2
Upstream geneIl28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik
Downstream geneC1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109I21.bB6Ng01-109I21.g
ACCDH916433DH916434
length1,0741,093
definitionDH916433|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I21, 5' end.DH916434|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,192,520 - 136,193,592)(136,329,194 - 136,330,292)
sequence
gaattctacatgttgagctgaaaacagcagaaggggattgtaatgccata
ctgggcggagcttatgcataggaggcctcaaagcccacctacaattcctc
caatgaggccacacctcctccgatgaggccacacctcctaatagttctac
ttcccaagggccaagcaaatttaatccaccacaatgacgaaggccctttt
tacagtttgcactggtgagggagtcacagcgaagaaataaacgacacaaa
tagagttttgccatgatggatatcaatagtaaacagttaaagaaaggtct
gacctatgaacaggaagtttagctttgcgaacttggggtagggagtgagg
gataagacaagtggacagggccagatttccctctgcttcgccaaatacta
gactggccttgcttcctttctctccctcctggtgccaccacactgtcctg
gagatcatgtagagcaccctatccttgccccctttctccctccagatgcc
actacagcacgctggccttctctctcctagcccatgtgctggctgcgcac
agggcacagggcgactatgagcgctgggtgtctgagcaggtgctggaacc
gctggggatgagtgacaccggctttgcactgacaggaacagtgcgtgcac
gtctggctgctggcttctatggcagcggcaggtccgccccgctctacgat
ctgggctggtaccggccatcgggccagatgtactcgacagctgcagacct
ggccaggcttgcggctgcgctcctgggtgcaggtccccgacggctgctac
ggcccgacagcctggccacattgctagcaccactacgcgcctgcgcccac
ggctactttgctagtgaaaccggtacaccctggggagttccacgagaggc
gtggataccgcgttggcgcgcaaggatggcgacttggacggctatgccgc
cagtctgggcgctcgtgccaccgctgcgcttgggaattgtgtgttgctag
ccgggcttcgtcctcccacagcccaactctgagggcgtacccctggaatc
ttgctgccagccctggaggcgcat
gaattcccctggggggaggctgagaagtaggtactcacatggcacgccca
tttcagaagagggaagtatttcccctaatgaagggctcagggttgcttgg
tgtgatttggtttttggtacctggggatagacctggggactcatacaaac
attctaccactgagatgtacccccagctggggctcaggtttacattaggg
accaagttctcacgaccccaactttgaatccccataagacaagatcccct
gggtatacatccctgggttctttttatatttgttttgagaaagggtctca
tgtatcacaggctagctgcaaactagctgtgtagctaaggctatgacatt
gaacttctgatcctcctgcctccactttctggatgtcgtgattacaggta
ggcaccaccatgatcacttttgttcagtgcggggcctgggacccaagtct
tgtgcaagctaggcaaccactctatcaactgagctccatccccatcccat
ccctgagtccttattgcattctttgggtaggatctaagcccacatctgtg
tccccagtatcctgagagaaagatgagactggacggcccttctctctccc
tagcattgtctcagctcctgctattacctgagaccatgggtcatcccttt
gcctttttgactctggtttcttcacctgtgaagtggtggtcttccccact
gttacaggaaggttcctccaaagcatctaacattgaggctggcatgggtt
agttcccaatagagaatagcaatagtaattatcactatcagcatcatcgt
caattttaataatcactccacctatcccgtggtctctggagaggcccaga
ctctacagcccatcccccattccactccagtcttctaaggggactcagct
gcagcctagggtccatacctcccccctcaagcctcgcctcttcaatagca
ggggtccaagggtcagactccttttgtgggtctttcttgtaccaattatt
ccaccgtggaagctgctggggcccatccacaccctgccagaataaggcca
gctgggctgcagggtccccggaaccaattatattgggggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136192520_136193592
seq2: B6Ng01-109I21.b_48_1121

seq1  GAATTCTACATGTTGAGCTGAAAACAGCAGAAGGGGATTGTAATGCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATGTTGAGCTGAAAACAGCAGAAGGGGATTGTAATGCCATA  50

seq1  CTGGGCGGAGCTTATGCATAGGAGGCCTCAAAGCCCACCTACAATTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCGGAGCTTATGCATAGGAGGCCTCAAAGCCCACCTACAATTCCTC  100

seq1  CAATGAGGCCACACCTCCTCCGATGAGGCCACACCTCCTAATAGTTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGCCACACCTCCTCCGATGAGGCCACACCTCCTAATAGTTCTAC  150

seq1  TTCCCAAGGGCCAAGCAAATTTAATCCACCACAATGACGAAGGCCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGGGCCAAGCAAATTTAATCCACCACAATGACGAAGGCCCTTTT  200

seq1  TACAGTTTGCACTGGTGAGGGAGTCACAGCGAAGAAATAAACGACACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTGCACTGGTGAGGGAGTCACAGCGAAGAAATAAACGACACAAA  250

seq1  TAGAGTTTTGCCATGATGGATATCAATAGTAAACAGTTAAAGAAAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTTGCCATGATGGATATCAATAGTAAACAGTTAAAGAAAGGTCT  300

seq1  GACCTATGAACAGGAAGTTTAGCTTTGCGAACTTGGGGTAGGGAGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATGAACAGGAAGTTTAGCTTTGCGAACTTGGGGTAGGGAGTGAGG  350

seq1  GATAAGACAAGTGGACAGGGCCAGATTTCCCTCTGCTTCGCCAAATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGACAAGTGGACAGGGCCAGATTTCCCTCTGCTTCGCCAAATACTA  400

seq1  GACTGGCCTTGCTTCCTTTCTCTCCCTCCTGGTGCCACCACACTGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCTTGCTTCCTTTCTCTCCCTCCTGGTGCCACCACACTGTCCTG  450

seq1  GAGATCATGTAGAGCACCCTATCCTTGCCCCCTTTCTCCCTCCAGATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATGTAGAGCACCCTATCCTTGCCCCCTTTCTCCCTCCAGATGCC  500

seq1  ACTACAGCACGCTGGCCTTCTCTCTCCTAGCCCATGTGCTGGCTGCGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGCACGCTGGCCTTCTCTCTCCTAGCCCATGTGCTGGCTGCGCAC  550

seq1  AGGGCACAGGGCGACTATGAGCGCTGGGTGTCTGAGCAGGTGCTGGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGGCGACTATGAGCGCTGGGTGTCTGAGCAGGTGCTGGAACC  600

seq1  GCTGGGGATGAGTGACACCGGCTTTGCACTGACAGGAACAGTGCGTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGATGAGTGACACCGGCTTTGCACTGACAGGAACAGTGCGTGCAC  650

seq1  GTCTGGCTGCTGGCTTCTATGGCAGCGGCAGGTCCGCCCCGCTCTACGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCTGCTGGCTTCTATGGCAGCGGCAGGTCCGCCCCGCTCTACGAT  700

seq1  CTGGGCTGGTACCGGCCATCGGGCCAGATGTACTCGACAGCTGCAGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGGTACCGGCCATCGGGCCAGATGTACTCGACAGCTGCAGACCT  750

seq1  GGCCAGGCTTGCGGCTGCGCTCCTGGGTGCAGGTCCCCGACGGCTGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTTGCGGCTGCGCTCCTGGGTGCAGGTCCCCGACGGCTGCTAC  800

seq1  GGCCCGACAGCCTGGCCACATTGCTAGCACCACTACGCGCCTGCGCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGACAGCCTGGCCACATTGCTAGCACCACTACGCGCCTGCGCCCAC  850

seq1  GGCTACTTTGCTAGTGAAACCGGTACACCCT-GGGAGTTCCACGAGAGGC  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTACTTTGCTAGTGAAACCGGTACACCCTGGGGAGTTCCACGAGAGGC  900

seq1  GTGGATACCGCG-TGGCGCGCAAGGATGGCGACTTGGACGGCTATGCCGC  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGGATACCGCGTTGGCGCGCAAGGATGGCGACTTGGACGGCTATGCCGC  950

seq1  CAGCCT-GGCGCTCGTGCCACCGCTGCGCTTGGGATTTGTGCTGTTGCTA  997
      ||| || |||||||||||||||||||||||||||| ||||| ||||||||
seq2  CAGTCTGGGCGCTCGTGCCACCGCTGCGCTTGGGAATTGTG-TGTTGCTA  999

seq1  GCCGGGCCTCGCCCTCCCAC-GCGCGAC-CTGGTGGCTGACGCCCTGGAT  1045
      ||||||| ||| |||||||| || | || |||  |||  || ||||||| 
seq2  GCCGGGCTTCGTCCTCCCACAGCCCAACTCTGAGGGCGTAC-CCCTGGA-  1047

seq1  ACGCTGCTGCCAGCCCTGGAGCGCGCAT  1073
      |   ||||||||||||||||| ||||||
seq2  ATCTTGCTGCCAGCCCTGGAG-GCGCAT  1074

seq1: chr4_136329194_136330292
seq2: B6Ng01-109I21.g_69_1161 (reverse)

seq1  CAAACACCCCAAATAATTGCGTCCGGGGGCCCTGCAGCCCAGCCTGGCCT  50
      ||||| ||| | |||||||  ||||||| ||||||||||||| |||||||
seq2  CAAACCCCCAATATAATTGGTTCCGGGGACCCTGCAGCCCAG-CTGGCCT  49

seq1  CATTACTGGCAGGGTGGGGCTGTGGGCCCAGCAGCCTTCACAGATGGAA-  99
       ||| ||||||||||| || || || ||||||||| | ||| | ||||| 
seq2  TATT-CTGGCAGGGTGTGGATG-GGCCCCAGCAGCTTCCAC-GGTGGAAT  96

seq1  AATTGGTGACAAGAAAGAGCCACAGAAAGAAGCTTGACCC-TGGAGCCCT  148
      ||||||| |||||||||| ||||| |||| ||  |||||| |||| ||||
seq2  AATTGGT-ACAAGAAAGACCCACA-AAAGGAGTCTGACCCTTGGACCCCT  144

seq1  GCCTATTG-AGA-GCGAGGCCTGAGGGGGGA-GTATGGATCCCTAGGGCT  195
      | |||||| ||| ||||||| |||||||||| ||||||| ||||| ||||
seq2  G-CTATTGAAGAGGCGAGGCTTGAGGGGGGAGGTATGGA-CCCTA-GGCT  191

seq1  GCAGCTGAGTCCCCTTAGAAGACTGGAGTGGAAAGGGGGGATGGGCTGTA  245
      ||||||||||||||||||||||||||||||| || |||||||||||||||
seq2  GCAGCTGAGTCCCCTTAGAAGACTGGAGTGG-AATGGGGGATGGGCTGTA  240

seq1  GAGTCTGGGGCCTCTCCAGAGACCACGGGATAGGTGGAGTGATTATTAAA  295
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCT-GGGCCTCTCCAGAGACCACGGGATAGGTGGAGTGATTATTAAA  289

seq1  ATTGACGATGATGCTGATAGTGATAATTACTATTGCTATTCTCTATTGGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACGATGATGCTGATAGTGATAATTACTATTGCTATTCTCTATTGGG  339

seq1  AACTAACCCATGCCAGCCTCAATGTTAGATGCTTTGGAGGAACCTTCCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCCATGCCAGCCTCAATGTTAGATGCTTTGGAGGAACCTTCCTG  389

seq1  TAACAGTGGGGAAGACCACCACTTCACAGGTGAAGAAACCAGAGTCAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGGGGAAGACCACCACTTCACAGGTGAAGAAACCAGAGTCAAAA  439

seq1  AGGCAAAGGGATGACCCATGGTCTCAGGTAATAGCAGGAGCTGAGACAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGGGATGACCCATGGTCTCAGGTAATAGCAGGAGCTGAGACAAT  489

seq1  GCTAGGGAGAGAGAAGGGCCGTCCAGTCTCATCTTTCTCTCAGGATACTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGAGAGAGAAGGGCCGTCCAGTCTCATCTTTCTCTCAGGATACTG  539

seq1  GGGACACAGATGTGGGCTTAGATCCTACCCAAAGAATGCAATAAGGACTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACAGATGTGGGCTTAGATCCTACCCAAAGAATGCAATAAGGACTC  589

seq1  AGGGATGGGATGGGGATGGAGCTCAGTTGATAGAGTGGTTGCCTAGCTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGGATGGGGATGGAGCTCAGTTGATAGAGTGGTTGCCTAGCTTG  639

seq1  CACAAGACTTGGGTCCCAGGCCCCGCACTGAACAAAAGTGATCATGGTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACTTGGGTCCCAGGCCCCGCACTGAACAAAAGTGATCATGGTGG  689

seq1  TGCCTACCTGTAATCACGACATCCAGAAAGTGGAGGCAGGAGGATCAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACCTGTAATCACGACATCCAGAAAGTGGAGGCAGGAGGATCAGAA  739

seq1  GTTCAATGTCATAGCCTTAGCTACACAGCTAGTTTGCAGCTAGCCTGTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATGTCATAGCCTTAGCTACACAGCTAGTTTGCAGCTAGCCTGTGA  789

seq1  TACATGAGACCCTTTCTCAAAACAAATATAAAAAGAACCCAGGGATGTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGACCCTTTCTCAAAACAAATATAAAAAGAACCCAGGGATGTAT  839

seq1  ACCCAGGGGATCTTGTCTTATGGGGATTCAAAGTTGGGGTCGTGAGAACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGGATCTTGTCTTATGGGGATTCAAAGTTGGGGTCGTGAGAACT  889

seq1  TGGTCCCTAATGTAAACCTGAGCCCCAGCTGGGGGTACATCTCAGTGGTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCTAATGTAAACCTGAGCCCCAGCTGGGGGTACATCTCAGTGGTA  939

seq1  GAATGTTTGTATGAGTCCCCAGGTCTATCCCCAGGTACCAAAAACCAAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTGTATGAGTCCCCAGGTCTATCCCCAGGTACCAAAAACCAAAT  989

seq1  CACACCAAGCAACCCTGAGCCCTTCATTAGGGGAAATACTTCCCTCTTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAGCAACCCTGAGCCCTTCATTAGGGGAAATACTTCCCTCTTCT  1039

seq1  GAAATGGGCGTGCCATGTGAGTACCTACTTCTCAGCCTCCCCCCAGGGGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGCGTGCCATGTGAGTACCTACTTCTCAGCCTCCCCCCAGGGGA  1089

seq1  ATTC  1099
      ||||
seq2  ATTC  1093