BAC Information

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BAC

Clone NameB6Ng01-110A02
Chromosome4 (Build37)
Map Location 121,610,954 - 121,777,476
singlet/doubletdoublet
Overlap geneLOC666931, LOC666937
Upstream geneZfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
Downstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A02.bB6Ng01-110A02.g
ACCDH916755DH916756
length1,0961,120
definitionDH916755|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A02, 5' end.DH916756|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,610,954 - 121,612,056)(121,776,477 - 121,777,476)
sequence
gaattctgtctctctctgttctgcaagtcctgggacaaaaggcataggtt
gatacacaaaacttttctaactactgttgaacaaaatttgatcaaactct
gcatctagatgtcaaaattaaaacccatgttaggttcttggttttgttta
ctgagccactgcattttgtgtccgaggctcacatcaaactgactttgtag
tcaaggttaaccttgaatttcagatcctccatctcctaagtcccagtatt
actgacatgtgtcaccaccaatatttttgtgcttcttccttttagttgac
aagtgtcctgtctagcaggacctagttattccgtgggtcaaggaggaccg
aggcctgcaagagaagcaggtggagaaaggggagcaagaccaatcaaaga
gttgtcaaggtctgtttaatgaaggctaaaagccaggttataagcacaca
gtgagagaaaatagggaggggtcgagggggcataataaaatacagagaaa
gggatggacatctggggtggatgctgattacaagcttctagcagcttttc
ttgcaatgtcggccctaaaagggtcacgagtggccttcaaacattctgca
gtttatcctggattacctgtcctgactaaacagtctcgggcaccaaacag
aggcatggaggaggaggtaaagctgccttaatctaagcagttctaggctc
ggaatggagacatgaagaaggggatgaggctggcagtctcaggctccagg
tagaggcaatgaggagggggtgacataattcccttcaaaggtcagccgaa
tctttagggtgagagttactggtgggacctagtttcccacagtttagtct
ctcacagacaagtttttatagatcaaaatatggggctttgctttaaatgc
tctgaattccaggaagatttgtgagagagatggaataaaattgactgtga
tcatgggccacatatgtgcagttcagaaacagcttctggagtcggtctcc
ccttccatcagagacctgatagctcttgaaggtgagcctgagagtcactt
tatgctagccaatttctagactggagatttacaatgctatgaagaa
gaattcttaaggcccaaagtttacatatgagtctgagcttataaaggtgg
ggagaacccatcccctaccatgctaggatctcctggttgctttatcagga
tctgtctgtaaaacaggttcagtctctcagcaggtagtggagtcttggag
gaaaatgcagatgtggcaggacaatagactacttaggtcagaagactcta
ctctaggtgggctagcaactgtggcaaaccaagtctgagccaggctgccc
aaggctgggaggagggcacagttcctccctttttatttattaagaattac
tggactggggcataaaatttacttatgctccatggtcttgcctgagaatt
atggcagctggcagccacacctgtctttggactatatttattggactctt
ttctaacccatctaacaacatgaagcttgtttgtttactttttgtacaaa
catggccttttgttatttattataaacaaacatggcctcttggcacatgc
ctctgttaggttgaaaaaagagccatagagcagtggcccatctttggctg
ctggcccttattgcacacctttttcccattcataccaaggccacaatatg
cactcaatgcatcacttcatagaggttaataactaccacctgagctttgc
tgtaggaaagtctgtatggaggtaaccgaccaacttgaaatacaaagtca
aagtttgaaagaacaagatgaatattatctgtggagatatcccaggctct
caattcagttgcaaatcagcaaagatcagagccagtttgggctcccagtg
tgggagaagtggctttgagaaataacagaaaaattgttcttctcattaaa
tagtggaggctatgctctaagttaactctgctggctataggatttttagc
tattttcataataggaatctcaatattggattttttctagaccagtcatg
aatgattagagtaactggtcaattaaaggaaagagaagtcttataatctt
cctctgatattttttcctaatcaatttcccagtctctgggtctctgtacc
acaaatctaaaattgaacagggagacttagctgttctatctgtgtcatag
gtaagtgcaggatgtcaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_121610954_121612056
seq2: B6Ng01-110A02.b_40_1135

seq1  GAATTCTGTCTCTCTCTGTTCTGCAAGTCCTGGGACAAAAGGCATAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCTCTCTGTTCTGCAAGTCCTGGGACAAAAGGCATAGGTT  50

seq1  GATACACAAAACTTTTCTAACTACTGTTGAACAAAATTTGATCAAACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACAAAACTTTTCTAACTACTGTTGAACAAAATTTGATCAAACTCT  100

seq1  GCATCTAGATGTCAAAATTAAAACCCATGTTAGGTTCTTGGTTTTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAGATGTCAAAATTAAAACCCATGTTAGGTTCTTGGTTTTGTTTA  150

seq1  CTGAGCCACTGCATTTTGTGTCCGAGGCTCACATCAAACTGACTTTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCACTGCATTTTGTGTCCGAGGCTCACATCAAACTGACTTTGTAG  200

seq1  TCAAGGTTAACCTTGAATTTCAGATCCTCCATCTCCTAAGTCCCAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTAACCTTGAATTTCAGATCCTCCATCTCCTAAGTCCCAGTATT  250

seq1  ACTGACATGTGTCACCACCAATATTTTTGTGCTTCTTCCTTTTAGTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATGTGTCACCACCAATATTTTTGTGCTTCTTCCTTTTAGTTGAC  300

seq1  AAGTGTCCTGTCTAGCAGGACCTAGTTATTCCGTGGGTCAAGGAGGACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCCTGTCTAGCAGGACCTAGTTATTCCGTGGGTCAAGGAGGACCG  350

seq1  AGGCCTGCAAGAGAAGCAGGTGGAGAAAGGGGAGCAAGACCAATCAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGCAAGAGAAGCAGGTGGAGAAAGGGGAGCAAGACCAATCAAAGA  400

seq1  GTTGTCAAGGTCTGTTTAATGAAGGCTAAAAGCCAGGTTATAAGCACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAAGGTCTGTTTAATGAAGGCTAAAAGCCAGGTTATAAGCACACA  450

seq1  GTGAGAGAAAATAGGGAGGGGTCGAGGGGGCATAATAAAATACAGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAAATAGGGAGGGGTCGAGGGGGCATAATAAAATACAGAGAAA  500

seq1  GGGATGGACATCTGGGGTGGATGCTGATTACAAGCTTCTAGCAGCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGACATCTGGGGTGGATGCTGATTACAAGCTTCTAGCAGCTTTTC  550

seq1  TTGCAATGTCGGCCCTAAAAGGGTCACGAGTGGCCTTCAAACATTCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGTCGGCCCTAAAAGGGTCACGAGTGGCCTTCAAACATTCTGCA  600

seq1  GTTTATCCTGGATTACCTGTCCTGACTAAACAGTCTCGGGCACCAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCTGGATTACCTGTCCTGACTAAACAGTCTCGGGCACCAAACAG  650

seq1  AGGCATGGAGGAGGAGGTAAAGCTGCCTTAATCTAAGCAGTTCTAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGAGGAGGAGGTAAAGCTGCCTTAATCTAAGCAGTTCTAGGCTC  700

seq1  GGAATGGAGACATGAAGAAGGGGATGAGGCTGGCAGTCTCAGGCTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGAGACATGAAGAAGGGGATGAGGCTGGCAGTCTCAGGCTCCAGG  750

seq1  TAGAGGCAATGAGGAGGGGGTGACATAATTCCCTTCAAAGGTCAGCCGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCAATGAGGAGGGGGTGACATAATTCCCTTCAAAGGTCAGCCGAA  800

seq1  TCTTTAGGGTGAGAGTTACTGGTGGGACCTAGTTTCCCACAGTTTAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGGTGAGAGTTACTGGTGGGACCTAGTTTCCCACAGTTTAGTCT  850

seq1  CTCACAGACAAGTATTTATAGATCAAAATATGGGGCTTTGCTTTAAAATG  900
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  CTCACAGACAAGTTTTTATAGATCAAAATATGGGGCTTTGCTTT-AAATG  899

seq1  CTCTGAATTCCAGGAAGACTAGGTGAGAGAGATGGAATAAAATTGACTGT  950
      |||||||||||||||||| |  ||||||||||||||||||||||||||||
seq2  CTCTGAATTCCAGGAAGA-TTTGTGAGAGAGATGGAATAAAATTGACTGT  948

seq1  GATCATGGG-CACATATGTGCAGTTCAGAAACAAGCTTCTGGAGTCGGTC  999
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  GATCATGGGCCACATATGTGCAGTTCAGAAAC-AGCTTCTGGAGTCGGTC  997

seq1  TCTCCTTCCATCAGAGACCTGATAGCTCTTG-AGGTGAGCCTGAGAGTCA  1048
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCCTTCCATCAGAGACCTGATAGCTCTTGAAGGTGAGCCTGAGAGTCA  1047

seq1  CTTTTAATTGCCTAAGCCATATTTCTAGACT-GAGATTAACAAATGCTAA  1097
      ||||    |||   ||||| ||||||||||| |||||| || ||||||| 
seq2  CTTT---ATGC--TAGCCA-ATTTCTAGACTGGAGATTTAC-AATGCTAT  1090

seq1  GAAGAA  1103
      ||||||
seq2  GAAGAA  1096

seq1: chr4_121776477_121777476
seq2: B6Ng01-110A02.g_212_1186 (reverse)

seq1  TCTTGAACTACCTGCACTTACCTATGACCCAGATTAGACAAGCTAAG-CT  49
      ||||| ||  |||||||||||||||||| |||| ||||  ||||||| ||
seq2  TCTTG-ACATCCTGCACTTACCTATGACACAGA-TAGAACAGCTAAGTCT  48

seq1  GCCTTGGTTCAAATTTTTAGATTATGTGGGACAGAGAACACAGAGACTGT  99
       |||  ||||||  ||||||||| ||||| |||||| || ||||||||| 
seq2  CCCT--GTTCAA--TTTTAGATT-TGTGGTACAGAG-ACCCAGAGACTG-  91

seq1  GGAAATTGATTTAGAAAAAAATAATCAAGAGGAAGATTTATAATGACTTT  149
      ||||||||| |||| ||||||| ||| ||||||||| |||||| |||  |
seq2  GGAAATTGA-TTAGGAAAAAAT-ATC-AGAGGAAGA-TTATAA-GAC--T  134

seq1  TCTCTTTCCTTTAATGTGACCAGTTACTCTGACTCATTCATGGACTGGTC  199
      ||||||||||||||| |||||||||||||| | |||||||| ||||||||
seq2  TCTCTTTCCTTTAAT-TGACCAGTTACTCT-AATCATTCAT-GACTGGTC  181

seq1  TAGAAATAAATCCAATATTGGAGATTCCTATTATGAAAATAGCTAAAAAT  249
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAAA-AAATCCAATATT-GAGATTCCTATTATGAAAATAGCTAAAAAT  229

seq1  CCTTATTAGCCAGCAGAGTTAACTTAGAGCATAGCCTCCACTATTTAAAT  299
      |||   |||||||||||||||||||||||||||||||||||||||| |||
seq2  CCT--ATAGCCAGCAGAGTTAACTTAGAGCATAGCCTCCACTATTT-AAT  276

seq1  GAGAAGTAACAATTTTTCTGTTGATTCTCAAAGCCACTTCTCCCACACTG  349
      |||||| |||||||||||||||  ||||||||||||||||||||||||||
seq2  GAGAAG-AACAATTTTTCTGTTATTTCTCAAAGCCACTTCTCCCACACTG  325

seq1  GGAGGCCAAACTTGGCTCTGATCTTTGCTGATTTGCAACTGAATTGAGAG  399
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAAAC-TGGCTCTGATCTTTGCTGATTTGCAACTGAATTGAGAG  374

seq1  CCTGGGATATCTCCACAGATAATATTCATCTTGTTTCTTTC-AACTTTGA  448
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  CCTGGGATATCTCCACAGATAATATTCATCTTG-TTCTTTCAAACTTTGA  423

seq1  CTTTGTATTTCAAGTTGGTCGGTTACCTCCATACAGACTTTCCTACAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATTTCAAGTTGGTCGGTTACCTCCATACAGACTTTCCTACAGCA  473

seq1  AAGCTCAGGTGGTAGTTATTAACCTCTATGAAGTGATGCATTGAGTGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGGTGGTAGTTATTAACCTCTATGAAGTGATGCATTGAGTGCAT  523

seq1  ATTGTGGCCTTGGTATGAATGGGAAAAAGGTGTGCAATAAGGGCCAGCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCCTTGGTATGAATGGGAAAAAGGTGTGCAATAAGGGCCAGCAG  573

seq1  CCAAAGATGGGCCACTGCTCTATGGCTCTTTTTTCAACCTAACAGAGGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATGGGCCACTGCTCTATGGCTCTTTTTTCAACCTAACAGAGGCA  623

seq1  TGTGCCAAGAGGCCATGTTTGTTTATAATAAATAACAAAAGGCCATGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAAGAGGCCATGTTTGTTTATAATAAATAACAAAAGGCCATGTTT  673

seq1  GTACAAAAAGTAAACAAACAAGCTTCATGTTGTTAGATGGGTTAGAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAAAGTAAACAAACAAGCTTCATGTTGTTAGATGGGTTAGAAAAG  723

seq1  AGTCCAATAAATATAGTCCAAAGACAGGTGTGGCTGCCAGCTGCCATAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATAAATATAGTCCAAAGACAGGTGTGGCTGCCAGCTGCCATAAT  773

seq1  TCTCAGGCAAGACCATGGAGCATAAGTAAATTTTATGCCCCAGTCCAGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCAAGACCATGGAGCATAAGTAAATTTTATGCCCCAGTCCAGTA  823

seq1  ATTCTTAATAAATAAAAAGGGAGGAACTGTGCCCTCCTCCCAGCCTTGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAATAAATAAAAAGGGAGGAACTGTGCCCTCCTCCCAGCCTTGGG  873

seq1  CAGCCTGGCTCAGACTTGGTTTGCCACAGTTGCTAGCCCACCTAGAGTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGCTCAGACTTGGTTTGCCACAGTTGCTAGCCCACCTAGAGTAG  923

seq1  AGTCTTCTGACCTAAGTAGTCTATTGTCCTGCCACATCTGCATTTTCCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTGACCTAAGTAGTCTATTGTCCTGCCACATCTGCATTTTCCTC  973

seq1  CA  1000
      ||
seq2  CA  975