BAC Information

Click to search

BAC

Clone NameB6Ng01-110A10
Chromosome4 (Build37)
Map Location 124,317,490 - 124,526,163
singlet/doubletdoublet
Overlap genePou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1
Upstream geneMacf1, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332
Downstream geneYrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A10.bB6Ng01-110A10.g
ACCDH916769DH916770
length1,1531,097
definitionDH916769|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A10, 5' end.DH916770|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,524,972 - 124,526,163)(124,317,490 - 124,318,600)
sequence
gaattcccaggaaaagggactagctacctgggactccaacctcagtgaca
ttttctccaaagcacaaccaaagatgcaggctgttgactcacacagccct
tgggaagcctgagaacacccgcggcaagggcgggcaagcccctgacttgg
cacctcgagggacacggggatactacaataaacaccccagattttggtgg
aaaaaagttttatgaaaacattacctgtttaaaaaaaaaaaaagtagaaa
ttgcattgaattgagaaagtgacatgacattatcacctatttttgtccca
gtgagccaccaccaaggagcagtgtatggtttttacacgccagttctaga
aaaaggttgtactataatataatttgacagatccaattaaacttgcattt
tcaacgcagactgagaagccctcaagccgccagaacagtgagagatgcct
gggctaatgaccaacctccccaagagcaggggcataagaaacaagatcca
agaatatgcaagaaacagaccaatcagaaatatgtatgatccagttttat
ggctcatccccttctgcctcagaggagagatggacaatttcccatctgtg
tcacagcacaaccacttgcaaacttcatctgtgaaaatcttgcactggct
ggagtatatttaaaatgcctctacagttgggaatttaagagtaagtggga
gccggtgagggaggtcattaacggcttcctaaatggatttgatgaagcgt
ggaagtcattctgcttttgagccaacagaggtggtgcagagagccttccg
acatatttctgattggggctgtgaaaaagctgtaaattcgcgacagtagt
gcacttccacacaccaacagtctcagtgacactggagacgcttcccttca
tggatgtgtttacaaatatgaagtctaaaggtgccaggtttctacctagg
aacaaccgacccttctttcagatcatttgtctggggagagggaaagagca
gggacgcgagaagcagttgaaaggcctcacagtcagaagaaaacagctgc
agcagtcttgaggcctgaggggcgcccggacaccagaagctgcatagatg
gacactgctgaatgctgatatggttctgggcagcttcaccagctgatgga
gca
gaattccagcccagacccagctaccggatgacttcggacaaatcacctca
cctctctgagcctcagattatttatctgcaaaagcagaggttacagaaga
aatggcgagaaaaggccagagaggcatagggaccgtcctgccacaccgca
ggcagatgatcaacaatgggcaactgccttttactttgacgacggtgaac
ctgggctagcgcttgactctcctgggcctacaggaagattactgctctcc
ccaaggcatgagagagtcatgggatggtacacctgtttgccatggagggc
acggagtcctctgaagaaggaacagctaagggggaatctgaatcaaggga
atggacagacacgtgaagggatggggactggacctggaaagagagagaac
tgggaagttcaaaggccctggggtagaagggaacgcagtaagtttgacca
ttgaagaggggagaacagaggggtggcaaggaagatctacaaggaaacaa
agaggtgggtcaccttcaaagggtgggagacaccaaggtaaagaccaggt
ttgccctgtgttatggtttggatataaagaacctctttatcaaaaaaaaa
aaaaaaaaaactagtgtgttaaaggcttgtgcacaggaatgtgggggcaa
cggctacgtcacaaggagcccgactttgctgacaaaaggcgggaactatt
tgagggaagtgggtcactgggataaaggatgtctttcccatccttccgct
ttgccacttgctggctgccatgaagtgagtgtcttccttccaccaggccc
tccctctacaacgttcctccataccagccgaagagcactggatgaagctg
atcctgagctgagacctcggacagagtgagcaaatggaatccagcccgct
aacaggttcctccctggtgtctgtcacagccattcaaaagtctgcctcac
agcctgcatacccgggaggacttcagggctgggaccctagaaggacaagt
caccaggctagaagctctccttggtggatatagctcaaagcaacctgggc
caccacatgccactcagatcaggggtgattggaataatcaagtgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124524972_124526163
seq2: B6Ng01-110A10.b_46_1198 (reverse)

seq1  TGCTCCATCAGCCCTGTGCTGAAGCTGGCCACAGGGAACCACTATCAGCA  50
      ||||||||||||    || |||||||| |||    |||||| ||||||||
seq2  TGCTCCATCAGC----TGGTGAAGCTGCCCA----GAACCA-TATCAGCA  41

seq1  TCTCAGCAGCTGCTCAATCTATGCAAGCCTTCCTGTGTGTCCGGGGCGCC  100
      | ||||||| || || |||||||| |||  | ||| ||||||||   || 
seq2  T-TCAGCAG-TG-TCCATCTATGC-AGC--TTCTG-GTGTCCGG---GCG  81

seq1  CCCCTCAGGCCCTCCAAGGAACTGCTGCAGCTGTTTTCTTCTGACTGTTG  150
      |||||||||||   ||||  ||||||||||||||||||||||||||| ||
seq2  CCCCTCAGGCC--TCAAG--ACTGCTGCAGCTGTTTTCTTCTGACTG-TG  126

seq1  AGGCCCCTTTTCAACTGCTTCTCCGCCGTCCCCTGCTCTTTCCCCTCTTC  200
      |||||   |||||||||||||||   ||| ||||||||||| ||||| ||
seq2  AGGCC---TTTCAACTGCTTCTC--GCGT-CCCTGCTCTTT-CCCTC-TC  168

seq1  CCCAGAACAAAATGATTCCTGAAAGGAAGGGTCGGTTGTTCCTAGGTAGA  250
      ||||||   |||||||  |||||| |||||||||||||||||||||||||
seq2  CCCAGA--CAAATGAT--CTGAAA-GAAGGGTCGGTTGTTCCTAGGTAGA  213

seq1  AACCTGGCACCTTTAGACTTTCATATTTGTAAACACATCCATTGAAGGGA  300
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  AACCTGGCACCTTTAGAC-TTCATATTTGTAAACACATCCA-TGAAGGGA  261

seq1  AGCGTCTCCAGTGTCACTGAGACTGTTGGTGTGTGGAAGTGCACTACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCTCCAGTGTCACTGAGACTGTTGGTGTGTGGAAGTGCACTACTGT  311

seq1  CGCGAATTTACAGCTTTTTCACAGCCCCAATCAGAAATATGTCGGAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAATTTACAGCTTTTTCACAGCCCCAATCAGAAATATGTCGGAAGGC  361

seq1  TCTCTGCACCACCTCTGTTGGCTCAAAAGCAGAATGACTTCCACGCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCACCACCTCTGTTGGCTCAAAAGCAGAATGACTTCCACGCTTCA  411

seq1  TCAAATCCATTTAGGAAGCCGTTAATGACCTCCCTCACCGGCTCCCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCATTTAGGAAGCCGTTAATGACCTCCCTCACCGGCTCCCACTT  461

seq1  ACTCTTAAATTCCCAACTGTAGAGGCATTTTAAATATACTCCAGCCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAAATTCCCAACTGTAGAGGCATTTTAAATATACTCCAGCCAGTG  511

seq1  CAAGATTTTCACAGATGAAGTTTGCAAGTGGTTGTGCTGTGACACAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTTCACAGATGAAGTTTGCAAGTGGTTGTGCTGTGACACAGATG  561

seq1  GGAAATTGTCCATCTCTCCTCTGAGGCAGAAGGGGATGAGCCATAAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGTCCATCTCTCCTCTGAGGCAGAAGGGGATGAGCCATAAAACT  611

seq1  GGATCATACATATTTCTGATTGGTCTGTTTCTTGCATATTCTTGGATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATACATATTTCTGATTGGTCTGTTTCTTGCATATTCTTGGATCTT  661

seq1  GTTTCTTATGCCCCTGCTCTTGGGGAGGTTGGTCATTAGCCCAGGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATGCCCCTGCTCTTGGGGAGGTTGGTCATTAGCCCAGGCATCT  711

seq1  CTCACTGTTCTGGCGGCTTGAGGGCTTCTCAGTCTGCGTTGAAAATGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTTCTGGCGGCTTGAGGGCTTCTCAGTCTGCGTTGAAAATGCAA  761

seq1  GTTTAATTGGATCTGTCAAATTATATTATAGTACAACCTTTTTCTAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTGGATCTGTCAAATTATATTATAGTACAACCTTTTTCTAGAAC  811

seq1  TGGCGTGTAAAAACCATACACTGCTCCTTGGTGGTGGCTCACTGGGACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGTAAAAACCATACACTGCTCCTTGGTGGTGGCTCACTGGGACAA  861

seq1  AAATAGGTGATAATGTCATGTCACTTTCTCAATTCAATGCAATTTCTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTGATAATGTCATGTCACTTTCTCAATTCAATGCAATTTCTACT  911

seq1  TTTTTTTTTTTTAAACAGGTAATGTTTTCATAAAACTTTTTTCCACCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAAACAGGTAATGTTTTCATAAAACTTTTTTCCACCAAA  961

seq1  ATCTGGGGTGTTTATTGTAGTATCCCCGTGTCCCTCGAGGTGCCAAGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGTGTTTATTGTAGTATCCCCGTGTCCCTCGAGGTGCCAAGTCA  1011

seq1  GGGGCTTGCCCGCCCTTGCCGCGGGTGTTCTCAGGCTTCCCAAGGGCTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTGCCCGCCCTTGCCGCGGGTGTTCTCAGGCTTCCCAAGGGCTGT  1061

seq1  GTGAGTCAACAGCCTGCATCTTTGGTTGTGCTTTGGAGAAAATGTCACTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCAACAGCCTGCATCTTTGGTTGTGCTTTGGAGAAAATGTCACTG  1111

seq1  AGGTTGGAGTCCCAGGTAGCTAGTCCCTTTTCCTGGGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAGTCCCAGGTAGCTAGTCCCTTTTCCTGGGAATTC  1153

seq1: chr4_124317490_124318600
seq2: B6Ng01-110A10.g_68_1164

seq1  GAATTCCAGCCCAGACCCAGCTACCGGATGACTTCGGACAAATCACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCAGACCCAGCTACCGGATGACTTCGGACAAATCACCTCA  50

seq1  CCTCTCTGAGCCTCAGATTATTTATCTGCAAAAGCAGAGGTTACAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGAGCCTCAGATTATTTATCTGCAAAAGCAGAGGTTACAGAAGA  100

seq1  AATGGCGAGAAAAGGCCAGAGAGGCATAGGGACCGTCCTGCCACACCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGAGAAAAGGCCAGAGAGGCATAGGGACCGTCCTGCCACACCGCA  150

seq1  GGCAGATGATCAACAATGGGCAACTGCCTTTTACTTTGACGACGGTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGATCAACAATGGGCAACTGCCTTTTACTTTGACGACGGTGAAC  200

seq1  CTGGGCTAGCGCTTGACTCTCCTGGGCCTACAGGAAGATTACTGCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTAGCGCTTGACTCTCCTGGGCCTACAGGAAGATTACTGCTCTCC  250

seq1  CCAAGGCATGAGAGAGTCATGGGATGGTACACCTGTTTGCCATGGAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCATGAGAGAGTCATGGGATGGTACACCTGTTTGCCATGGAGGGC  300

seq1  ACGGAGTCCTCTGAAGAAGGAACAGCTAAGGGGGAATCTGAATCAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGTCCTCTGAAGAAGGAACAGCTAAGGGGGAATCTGAATCAAGGGA  350

seq1  ATGGACAGACACGTGAAGGGATGGGGACTGGACCTGGAAAGAGAGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGACACGTGAAGGGATGGGGACTGGACCTGGAAAGAGAGAGAAC  400

seq1  TGGGAAGTTCAAAGGCCCTGGGGTAGAAGGGAACGCAGTAAGTTTGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTTCAAAGGCCCTGGGGTAGAAGGGAACGCAGTAAGTTTGACCA  450

seq1  TTGAAGAGGGGAGAACAGAGGGGTGGCAAGGAAGATCTACAAGGAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGGGGAGAACAGAGGGGTGGCAAGGAAGATCTACAAGGAAACAA  500

seq1  AGAGGTGGGTCACCTTCAAAGGGTGGGAGACACCAAGGTAAAGACCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGGTCACCTTCAAAGGGTGGGAGACACCAAGGTAAAGACCAGGT  550

seq1  TTGCCCTGTGTTATGGTTTGGATATAAAGAACCTCTTTATCAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGTGTTATGGTTTGGATATAAAGAACCTCTTTATCAAAAAAAAA  600

seq1  AAAAAAAAAACTAGTGTGTTAAAGGCTTGTGCACAGGAATGTGGGGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACTAGTGTGTTAAAGGCTTGTGCACAGGAATGTGGGGGCAA  650

seq1  CGGCTACGTCACAAGGAGCCCGACTTTGCTGACAAAAGGCGGGAACTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTACGTCACAAGGAGCCCGACTTTGCTGACAAAAGGCGGGAACTATT  700

seq1  TGAGGGAAGTGGGTCACTGGGATAAAGGATGTCTTTCCCATCCTTCCGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAGTGGGTCACTGGGATAAAGGATGTCTTTCCCATCCTTCCGCT  750

seq1  TTGCCACTTGCTGGCTGCCATGAAGTGAGTGTCTTCCTTCCACCAGGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACTTGCTGGCTGCCATGAAGTGAGTGTCTTCCTTCCACCAGGCCC  800

seq1  TCCCTCTACAACGTTCCTCCATACCAGCCGAAGAGCACTGGATGAAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTACAACGTTCCTCCATACCAGCCGAAGAGCACTGGATGAAGCTG  850

seq1  ATCCTGAGCTGAGACCTCGGACAGAGTGAGCAAAATGGAATCCAGCCCGC  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCCTGAGCTGAGACCTCGGACAGAGTGAGC-AAATGGAATCCAGCCCGC  899

seq1  TAACAGGTTCCTCCCTGGTGTCTGTCACAGCCATTCAAAAAGTCTGCCTC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAACAGGTTCCTCCCTGGTGTCTGTCACAGCCATTC-AAAAGTCTGCCTC  948

seq1  ACCAGCCTGCATACCCGGGAAGGACTTCAAGGGCTGGGACCCTAGGACAG  1000
      | ||||||||||||||||| |||||||| ||||||||||||||| ||  |
seq2  A-CAGCCTGCATACCCGGG-AGGACTTC-AGGGCTGGGACCCTA-GAAGG  994

seq1  ACAAAGTCACCAAGGTCTAGAAGCTC-CCCTGGTGAATAATAGGCTCAAA  1049
      || |||||||||  | |||||||||| || ||||| || ||| |||| ||
seq2  AC-AAGTCACCA--GGCTAGAAGCTCTCCTTGGTGGAT-ATA-GCTC-AA  1038

seq1  AGCAACACTGGCCACACACATGCCACTCAAGATCAGGTGTGATTGGAATA  1099
      ||||||   |||||| |||||||||||| |||||||| ||||||||||||
seq2  AGCAACCTGGGCCAC-CACATGCCACTC-AGATCAGGGGTGATTGGAATA  1086

seq1  ATTCCAGTGCCA  1111
      | || |||||||
seq2  A-TCAAGTGCCA  1097