BAC Information

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BAC

Clone NameB6Ng01-110B06
Chromosome4 (Build37)1 (Build37)
Map Location 119,752,500 - 119,753,24942,091,115 - 42,091,311
singlet/doubletsingletsinglet
Overlap geneHivep3
Upstream geneSlc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneEdn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110B06.bB6Ng01-110B06.g
ACCDH916805DH916806
length752954
definitionDH916805|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B06, 5' end.DH916806|Mus musculus domesticus DNA, BAC clone: B6Ng01-110B06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,752,500 - 119,753,249)(42,091,115 - 42,091,311)
sequence
gaattcccacagtgtacatctttggccccaggatcctcccacagcctatg
gcctttgccagagtagaattttcaaaatcacttggcttgggtggccaaag
gatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtttgaagcctcagaaaaccatacaggactccagcctcctgccccat
gaggacagagcagaagttggaggaaaactgagaactgctcctgatggcat
ggcctgtctctaggggcttttagaactccaaagttgtcaaaacagaaaga
tctgggtcagggcctgaagtgagagttcttgacccaaaaataaggttgga
attcagtatttattaagattaactgaagtcccatgggcgtcaaggagctg
tcctggctgtgccttggcccatggaatcctctacaatattacacttgggg
acaccaggccactcagtgtgaggcctgaggtaccactccttgcctgctgt
cagcatcctgtaccatcttccacacagctggtttttagaaaatcgctctt
cttgcccctccttggcatctctacagcatcccctttaaaaagatagatgg
aagctccctctctccaccctgggaacccatgcccctgtcgggtaccagct
tcagccttcttgttctcccagattcacccatcctttgatagacgcctttc
tgtgcttctgcaaggcacatgaatgagatgagctgccctgccctacgcta
aa
gaattccaggctagcctggtgtactggctagttttgtgtcaacttgacac
agctggagttatcacagagaaaggaacttcagttgaggaaatgccttcat
gagatccaactgtaaggcattttctcaattagtgatcaagggggaaaggt
cccttgtgggtgggaccatctctgggctggtggtcttgggttctataaga
gagcaggctgagcaagccaggtgaggcaagccagtaatgaacatccctcc
atggcctctgcatcagctcctgcttcctgacctgcttgagttccagtcct
gacatcctttggtgatgaacagcagtatggaaatgtaagccgaataaacc
ctttcctccccaacttgcttcttgatcatgatgtttgtgcaggaatagaa
accctgactaagacacctaggctatgtatcaagaccctgtctcagaaaac
caaaatcaggggccagtgagatggctcagtgggcaaaggtacttgccaca
caagcctgatgacctggatttaatccccagagcctgcgtagagatggaaa
gagaatcaggtctatggcatcgttctctaacctccacacatgcactatga
cacactcatgcaaaaaaaaaaaaatcaaaataagaaaacaaacaaacagg
agtctaatcctgttgagaccagccgttcccacatggtggcttcttgttac
cgggtgactgttcccacttactggactcctagcctgctacctgtctcaag
atctttactccttttaaccctctgtagggggtctcttcatggaccctttg
cttcagtgtcaccttcttagaggactcactctaccaccataattagaaat
aaatgtcaccctctgcctctccttcacaccattttcctccatagatctta
tccatggatctgcccactgtagctttagtgctttctaccaaatataccct
gagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119752500_119753249
seq2: B6Ng01-110B06.b_45_796

seq1  GAATTCCCACAGTGTACATCTTTGGCCCCAGGATCCTCCCACAGCCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACAGTGTACATCTTTGGCCCCAGGATCCTCCCACAGCCTATG  50

seq1  GCCTTTGCCAGAGTAGAATTTTCAAAATCACTTGGCTTGGGTGGCCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCCAGAGTAGAATTTTCAAAATCACTTGGCTTGGGTGGCCAAAG  100

seq1  GATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTATTTAAAGCCTCAGAAAACCATACAGGACTCCAGCCTCCTGCCCCAT  200
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGAAGCCTCAGAAAACCATACAGGACTCCAGCCTCCTGCCCCAT  200

seq1  GAGGACAGAGCAGAAGTTGGAGGAAAACTGAGAACTGCTCCTGATGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAGCAGAAGTTGGAGGAAAACTGAGAACTGCTCCTGATGGCAT  250

seq1  GGCCTGTCTCTAGGGGCTTTTAGAACTCCAAAGTTGTCAAAACAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTCTCTAGGGGCTTTTAGAACTCCAAAGTTGTCAAAACAGAAAGA  300

seq1  TCTGGGTCAGGGCCTGAAGTGAGAGTTCTTGACCCAAAAATAAGGTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCAGGGCCTGAAGTGAGAGTTCTTGACCCAAAAATAAGGTTGGA  350

seq1  ATTCAGTATTTATTAAGATTAACTGAAGTCCCATGGGCGTCAAGGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTATTTATTAAGATTAACTGAAGTCCCATGGGCGTCAAGGAGCTG  400

seq1  TCCTGGCTGTGCCTTGGCCCATGGAATCCTCTACAATATTACACTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTGTGCCTTGGCCCATGGAATCCTCTACAATATTACACTTGGGG  450

seq1  ACACCAGGCCACTCAGTGTGAGGCCTGAGGTACCACTCCTTGCCTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGCCACTCAGTGTGAGGCCTGAGGTACCACTCCTTGCCTGCTGT  500

seq1  CAGCATCCTGTACCATCTTCCACACAGCTGGTTTTTAG-AAATCGCTCTT  549
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGCATCCTGTACCATCTTCCACACAGCTGGTTTTTAGAAAATCGCTCTT  550

seq1  CTTGCCCCTCCTTGGCATCTCTACAGCATCCCCTTTAAAAAGATAGATGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCTCCTTGGCATCTCTACAGCATCCCCTTTAAAAAGATAGATGG  600

seq1  AAGCTCCCTCTCTCCACCCTGGGAACCCATGCCCCTGTCAGGTACCAGCT  649
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGCTCCCTCTCTCCACCCTGGGAACCCATGCCCCTGTCGGGTACCAGCT  650

seq1  TCAGCCTTCTTGTTCTCCCAGATTCACCCATCCTTTGATAGACGCC-ATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TCAGCCTTCTTGTTCTCCCAGATTCACCCATCCTTTGATAGACGCCTTTC  700

seq1  TGTGCTTCTGCAAGGCACATGAATGAGATGAGCTGCCCTGCCCTACGCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTGCAAGGCACATGAATGAGATGAGCTGCCCTGCCCTACGCTA  750

seq1  AA  750
      ||
seq2  AA  752

seq1: chr1_42091115_42091311
seq2: B6Ng01-110B06.g_251_698

seq1  TCTTGGGTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGGGAATCAAGCCA  50
      ||||||||||||||||| |||||||||||||||||||| ||  |||||||
seq2  TCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGTGAGGCAAGCCA  50

seq1  GTAAGAAACATCCCTCCATGACCTCTGCATCAGCTCCTGCTTCCTGCCTT  100
      ||||  |||||||||||||| ||||||||||||||||||||||||| | |
seq2  GTAATGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCT  100

seq1  GCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAATGTGGAAG  150
      |||||||||||||||||||| |||||||||||||||||||| | ||||| 
seq2  GCTTGAGTTCCAGTCCTGACATCCTTTGGTGATGAACAGCAGTATGGAAA  150

seq1  TGTAAACCGAATAAACCCTTTCCTCCCCCCCAAAAAAAAATCAAAAT---  197
      ||||| ||||||||||||||||||||||    ||      ||   ||   
seq2  TGTAAGCCGAATAAACCCTTTCCTCCCC----AACTTGCTTCTTGATCAT  196

seq1  --------------------------------------------------  197
                                                        
seq2  GATGTTTGTGCAGGAATAGAAACCCTGACTAAGACACCTAGGCTATGTAT  246

seq1  --------------------------------------------------  197
                                                        
seq2  CAAGACCCTGTCTCAGAAAACCAAAATCAGGGGCCAGTGAGATGGCTCAG  296

seq1  --------------------------------------------------  197
                                                        
seq2  TGGGCAAAGGTACTTGCCACACAAGCCTGATGACCTGGATTTAATCCCCA  346

seq1  --------------------------------------------------  197
                                                        
seq2  GAGCCTGCGTAGAGATGGAAAGAGAATCAGGTCTATGGCATCGTTCTCTA  396

seq1  --------------------------------------------------  197
                                                        
seq2  ACCTCCACACATGCACTATGACACACTCATGCAAAAAAAAAAAAATCAAA  446

seq1  --  197
        
seq2  AT  448