BAC Information

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BAC

Clone NameB6Ng01-110D06
Chromosome4 (Build37)
Map Location 139,244,136 - 139,351,122
singlet/doubletdoublet
Overlap genePax7
Upstream geneUbxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2
Downstream geneGm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110D06.bB6Ng01-110D06.g
ACCDH916893DH916894
length1,1051,093
definitionDH916893|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D06, 5' end.DH916894|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,350,006 - 139,351,122)(139,244,136 - 139,245,250)
sequence
gaattcccacactggatgggaggtcaagtgtgtgaggccagactgggcta
ctaggcagtgggctattttgtgttttgatcttgttttgccctgtatccta
ggctggcttgaattccccatgcaagcacaaaatgatcctcctctttcagt
ctgtgtggtgctgaggattggactcaggaccatacccgtgctaggcaagc
aactccatcagctgggccagatccccagcaagcacagtgtgggcttcagg
cttgtgtgcgcgaagagtgaaaccctgtctccaaagggaagagaaagcaa
cctccccagaatagaaaggaacacaggcagacacacccgtgcctgggcta
cccatggtgggcagtgcaggtgaggctggacccctcagtcccgccacaca
cagcaccggccactccatgtccaggatgcttcatccattcctaccgatgc
acctgtattgcctcggtgtacagagatctggtcctcatcagctccctcat
aggccatccacagcaagcagagagtggctctggggcagagaagagaaggt
gctgtaaggagattagaggcagtggcccaagcctgagagtgttctacact
ttcatggcctgtttggtactctcacttcgcaaaggataatgaagcaagta
gaggtctggattcgagttctgaccgatagctgtgtgatcttgagtaagtt
cccagtccttccttgcctctcatccttagactgaggttggcctgggtgac
catggggatgggatacagttatgagtgcacagcttggcacctggtggggc
atctcagatgctcggccttcacacagtagcccctaggtctccagccagtt
ctctcccctcagcttcttcaatgcaaacattgtgtcttgttcacataccc
agaagaaggattctgccttctgagaaccagtgtgtctttggaattaccac
ctcctggcatcttaatgccactgccctacatggctggctgcatttgggga
aatgacattatttctttaacaagatcagctactgagctcagagcagtatt
gctgcagttacaagtaacagattttatctgtttaggtgtgtgtggtgtat
catct
gaattcacacacagagagttaaacaaagaggcctgtggtcaggcgtggtc
tgtatttaaccaagaacaatgtcatgagcctgtggagggaggcacgaagg
gccgagtactcagaaaggtgccaagggtgggtgggggcctctgggtgatt
ctgttcccaatcaggatcagtgggctcagcgtggacgtcctaagatatga
cctggcttcacaagataaatctgtcttaggtctcagttcctggtctaacc
tcagctcaccggactttctgtatgtccctggactggctccaccccaagaa
acacccaaggcctccccccccccgcccctcccggcctctaagccttttga
ttccttcctgctgtttaggtgagtccagagagtaattctggacagtccat
agcaagtaggtggaagcctctcagagggcacctgggaggtaggaggctgg
catgtgtcaccgagggatgaggtatatttcaggacatttcctgattacct
gctctcctttccaccttcctgtttgcacctgcctcccacctgggcctgtt
acagtgcacctgcctcccacctgggcctgttacagtgcacctgcttccca
cctgggcctgttacagtacacctgcctcccacctgggcctgttacagtgc
acctgcctcccacctgagccttttacactgcacctgcctgccacctgggc
cttttacactgcacctgcctcccacctgggcctgttacactgcacctgcc
tcccatctgggcctgttacagtgcacctgcctcccacctgagctttttac
actgcacctgcctgccacctgggcctgttacagtgcacctgcctcccacc
ttggcctgttacactgcactgcctgccacctggcctgttacagtgcactg
cctccactgggcctgtacagtgctctgctcacacctgggccacatcatgc
tggctgaggcatggagctcacaagaatatccactttgcagctctgcacca
gtgcttccaatctgatatcatgtgcagaaaagtggtggggaaagaagagg
aactgcttctcaaagtcacacgctacggaggcagaaagacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_139350006_139351122
seq2: B6Ng01-110D06.b_48_1152 (reverse)

seq1  AGATGGATACA-CACACACACTTAAACAGATAAAATCTGTTACTTGTAAC  49
      |||| |||||| ||||||||| ||||||||||||||||||||||||||| 
seq2  AGAT-GATACACCACACACACCTAAACAGATAAAATCTGTTACTTGTAA-  48

seq1  CTGCAGCAATTACTGCTCTGAGCTCAGTTAGCTGAATCTTGTTAAAAGAA  99
      ||||||||| ||||||||||||||||| |||||| |||||||| ||||||
seq2  CTGCAGCAA-TACTGCTCTGAGCTCAG-TAGCTG-ATCTTGTT-AAAGAA  94

seq1  ATAATGTCATTTTCCCCAAATGCAGCCAGCCATTGTAGGGCAGTGGCATT  149
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  ATAATGTCA-TTTCCCCAAATGCAGCCAGCCA-TGTAGGGCAGTGGCATT  142

seq1  AAGATGCCAGGAGGTGGTAAATTCCAAAGACACACTGGTTCTCAGAAGGC  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGATGCCAGGAGGTGGT-AATTCCAAAGACACACTGGTTCTCAGAAGGC  191

seq1  AGAAATCCTTCCTTCTGGGTATTGTGAACAAAGACACAATGTTTGCATTG  249
      || ||||||| |||||||||| ||||||| ||||||||||||||||||||
seq2  AG-AATCCTT-CTTCTGGGTA-TGTGAAC-AAGACACAATGTTTGCATTG  237

seq1  AAGAAGCTGAGGGGAGAGAACTGGCTGGAGACCTAGGGGCTACTGTGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTGAGGGGAGAGAACTGGCTGGAGACCTAGGGGCTACTGTGTGA  287

seq1  AGGCCGAGCATCTGAGATGCCCCACCAGGTGCCAAGCTGTGCACTCATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGAGCATCTGAGATGCCCCACCAGGTGCCAAGCTGTGCACTCATAA  337

seq1  CTGTATCCCATCCCCATGGTCACCCAGGCCAACCTCAGTCTAAGGATGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCCCATCCCCATGGTCACCCAGGCCAACCTCAGTCTAAGGATGAG  387

seq1  AGGCAAGGAAGGACTGGGAACTTACTCAAGATCACACAGCTATCGGTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGAAGGACTGGGAACTTACTCAAGATCACACAGCTATCGGTCAG  437

seq1  AACTCGAATCCAGACCTCTACTTGCTTCATTATCCTTTGCGAAGTGAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGAATCCAGACCTCTACTTGCTTCATTATCCTTTGCGAAGTGAGAG  487

seq1  TACCAAACAGGCCATGAAAGTGTAGAACACTCTCAGGCTTGGGCCACTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAACAGGCCATGAAAGTGTAGAACACTCTCAGGCTTGGGCCACTGC  537

seq1  CTCTAATCTCCTTACAGCACCTTCTCTTCTCTGCCCCAGAGCCACTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATCTCCTTACAGCACCTTCTCTTCTCTGCCCCAGAGCCACTCTCT  587

seq1  GCTTGCTGTGGATGGCCTATGAGGGAGCTGATGAGGACCAGATCTCTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGTGGATGGCCTATGAGGGAGCTGATGAGGACCAGATCTCTGTA  637

seq1  CACCGAGGCAATACAGGTGCATCGGTAGGAATGGATGAAGCATCCTGGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAGGCAATACAGGTGCATCGGTAGGAATGGATGAAGCATCCTGGAC  687

seq1  ATGGAGTGGCCGGTGCTGTGTGTGGCGGGACTGAGGGGTCCAGCCTCACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGGCCGGTGCTGTGTGTGGCGGGACTGAGGGGTCCAGCCTCACC  737

seq1  TGCACTGCCCACCATGGGTAGCCCAGGCACGGGTGTGTCTGCCTGTGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCCCACCATGGGTAGCCCAGGCACGGGTGTGTCTGCCTGTGTTC  787

seq1  CTTTCTATTCTGGGGAGGTTGCTTTCTCTTCCCTTTGGAGACAGGGTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTCTGGGGAGGTTGCTTTCTCTTCCCTTTGGAGACAGGGTTTC  837

seq1  ACTCTTCGCGCACACAAGCCTGAAGCCCACACTGTGCTTGCTGGGGATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCGCGCACACAAGCCTGAAGCCCACACTGTGCTTGCTGGGGATCT  887

seq1  GGCCCAGCTGATGGAGTTGCTTGCCTAGCACGGGTATGGTCCTGAGTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTGATGGAGTTGCTTGCCTAGCACGGGTATGGTCCTGAGTCCA  937

seq1  ATCCTCAGCACCACACAGACTGAAAGAGGAGGATCATTTTGTGCTTGCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGCACCACACAGACTGAAAGAGGAGGATCATTTTGTGCTTGCAT  987

seq1  GGGGAATTCAAGCCAGCCTAGGATACAGGGCAAAACAAGATCAAAACACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTCAAGCCAGCCTAGGATACAGGGCAAAACAAGATCAAAACACA  1037

seq1  AAATAGCCCACTGCCTAGTAGCCCAGTCTGGCCTCACACACTTGACCTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCCCACTGCCTAGTAGCCCAGTCTGGCCTCACACACTTGACCTCC  1087

seq1  CATCCAGTGTGGGAATTC  1117
      ||||||||||||||||||
seq2  CATCCAGTGTGGGAATTC  1105

seq1: chr4_139244136_139245250
seq2: B6Ng01-110D06.g_68_1160

seq1  GAATTCACACACAGAGAGTTAAACAAAGAGGCCTGTGGTCAGGCGTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACAGAGAGTTAAACAAAGAGGCCTGTGGTCAGGCGTGGTC  50

seq1  TGTATTTAACCAAGAACAATGTCATGAGCCTGTGGAGGGAGGCACGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAACCAAGAACAATGTCATGAGCCTGTGGAGGGAGGCACGAAGG  100

seq1  GCCGAGTACTCAGAAAGGTGCCAAGGGTGGGTGGGGGCCTCTGGGTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGTACTCAGAAAGGTGCCAAGGGTGGGTGGGGGCCTCTGGGTGATT  150

seq1  CTGTTCCCAATCAGGATCAGTGGGCTCAGCGTGGACGTCCTAAGATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCAATCAGGATCAGTGGGCTCAGCGTGGACGTCCTAAGATATGA  200

seq1  CCTGGCTTCACAAGATAAATCTGTCTTAGGTCTCAGTTCCTGGTCTAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTCACAAGATAAATCTGTCTTAGGTCTCAGTTCCTGGTCTAACC  250

seq1  TCAGCTCACCGGACTTTCTGTATGTCCCTGGACTGGCTCCACCCCAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCACCGGACTTTCTGTATGTCCCTGGACTGGCTCCACCCCAAGAA  300

seq1  ACACCCAAGGCCTCCCCCCCCCCGCCCCTCCCGGCCTCTAAGCCTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAGGCCTCCCCCCCCCCGCCCCTCCCGGCCTCTAAGCCTTTTGA  350

seq1  TTCCTTCCTGCTGTTTAGGTGAGTCCAGAGAGTAATTCTGGACAGTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTGCTGTTTAGGTGAGTCCAGAGAGTAATTCTGGACAGTCCAT  400

seq1  AGCAAGTAGGTGGAAGCCTCTCAGAGGGCACCTGGGAGGTAGGAGGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTAGGTGGAAGCCTCTCAGAGGGCACCTGGGAGGTAGGAGGCTGG  450

seq1  CATGTGTCACCGAGGGATGAGGTATATTTCAGGACATTTCCTGATTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCACCGAGGGATGAGGTATATTTCAGGACATTTCCTGATTACCT  500

seq1  GCTCTCCTTTCCACCTTCCTGTTTGCACCTGCCTCCCACCTGGGCCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTTTCCACCTTCCTGTTTGCACCTGCCTCCCACCTGGGCCTGTT  550

seq1  ACAGTGCACCTGCCTCCCACCTGGGCCTGTTACAGTGCACCTGCTTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCACCTGCCTCCCACCTGGGCCTGTTACAGTGCACCTGCTTCCCA  600

seq1  CCTGGGCCTGTTACAGTACACCTGCCTCCCACCTGGGCCTGTTACAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCTGTTACAGTACACCTGCCTCCCACCTGGGCCTGTTACAGTGC  650

seq1  ACCTGCCTCCCACCTGAGCCTTTTACACTGCACCTGCCTGCCACCTGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCCCACCTGAGCCTTTTACACTGCACCTGCCTGCCACCTGGGC  700

seq1  CTTTTACACTGCACCTGCCTCCCACCTGGGCCTGTTACACTGCACCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACACTGCACCTGCCTCCCACCTGGGCCTGTTACACTGCACCTGCC  750

seq1  TCCCATCTGGGCCTGTTACAGTGCACCTGCCTCCCACCTGAGCCTTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCCATCTGGGCCTGTTACAGTGCACCTGCCTCCCACCTGAGCTTTTTAC  800

seq1  ACTGCACCTGCCTGCCACCTGGGCCTGTTACAGTGCACCTGCCTCCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACCTGCCTGCCACCTGGGCCTGTTACAGTGCACCTGCCTCCCACC  850

seq1  TGGGCCTGTTACACTGCACCTGCCTGCCACCTGGGCCTGTTACAGTGCAC  900
      | |||||||||||||||| ||||||||||||| |||||||||||||||| 
seq2  TTGGCCTGTTACACTGCA-CTGCCTGCCACCT-GGCCTGTTACAGTGCA-  897

seq1  CTGCCTCCCACCTGGGCCTGTTACAGTGCTCCTGCCTCACACCTGGGCCC  950
      ||||||||   ||||||||| ||||||||| ||| |||||||||||| ||
seq2  CTGCCTCC--ACTGGGCCTG-TACAGTGCT-CTG-CTCACACCTGGG-CC  941

seq1  ACATCATGGCTGGCTGAGGGCATGGAGCTCCAACAAGACATATCCACTTT  1000
      ||||||| ||||||||| ||||||||||||  |||||| |||||||||||
seq2  ACATCAT-GCTGGCTGA-GGCATGGAGCTC--ACAAGA-ATATCCACTTT  986

seq1  GCAGCCTCTGCACCAGTGCTTCCCATTCTGATATCCATGTGCAGAAAGTG  1050
      |||| |||||||||||||||| ||| |||||||| ||||||||||||   
seq2  GCAG-CTCTGCACCAGTGCTT-CCAATCTGATAT-CATGTGCAGAAAAGT  1033

seq1  GGTGGCGAACAGAGAGGGAACTGCCTTCTCCAAAGTCACACAGCTACCGG  1100
      ||||| ||| |||   ||||||| ||||| ||||||||||| |||| |||
seq2  GGTGGGGAA-AGAAGAGGAACTG-CTTCT-CAAAGTCACAC-GCTA-CGG  1078

seq1  AGGCAGAGAGACAGT  1115
      ||||||| |||||||
seq2  AGGCAGAAAGACAGT  1093