BAC Information

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BAC

Clone NameB6Ng01-110I13
Chromosome4 (Build37)
Map Location 110,108,437 - 110,261,431
singlet/doubletdoublet
Overlap genenone
Upstream gene4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110I13.bB6Ng01-110I13.g
ACCDH917127DH917128
length1,0721,101
definitionDH917127|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I13, 5' end.DH917128|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,108,437 - 110,109,521)(110,260,310 - 110,261,431)
sequence
gaattcttaatcctctcctataagaagtcttctatatttccttgcaaaag
ttttgtttatttattattgggacaaccttagttatcaggagaaatttacc
tgcaagagaagctggggaatatagtattttagttggtatgctctccaaca
tactgatatgaaaaagaaaaaaaattaagcttgaaagactgttttaatta
ccaaagcattgttagaacatctagtgatagctgattggggataaatcaca
aatatactgtgagcaaagtactaaggaactggctttcactttgtatagat
aaatagttgaaaacatgtcactgcccaaagtcattcctttcttgttgttt
atgtacattgaactaatgcaatctggagggtaatggtttatgtgtatgaa
tgtgtaatactctaagctttttaaattttatatctggttctataaaaata
gatttatagattatagtgatagagtttttcaagagatttctagtatgctt
ttaagaatgaaacataccttatacatttgaggaaacctttaaaagtctat
attgagtaattgataactgagtaagtgtgaattgttagcagtatgacaaa
gtctctgccgtcacagtccctctccagtctgcactgctcttgggctttgg
gaagagtgacatatgcaactcttccttctttgtctgctttaatcttactg
cttgaccaccaggtactatggaatcctatctgatctccttgcctcttact
gaatgttcttttacatgtgattagctgttggaattgatgtttctatgcaa
agatcactgaaagtttttttcttgctaccactttctttgcttctcagaca
aagaactataatgcagaacaaatcccaaatacaaattttttatctcacag
ttttaatgtgtccatttctgtggtgtaatataaattatcagtatttatag
cctttcagatagcatttggcagtctacctggccgtatattaaattgtgct
ctttggtaaagtttggttagtatttcttcttctgaaaccaagtataagag
aattcaagtaagaagcttaaga
gaattcactctgtagaccagagtggccttgatctcacagatccacctacc
tgtgcctcctgagtgctgagacttaagataattcctatcttctgaatgtt
tcctcaaacagaaaattcttgcttcatgaagcacagcttattgtctatca
aaaccttagctaaaaacaaaaacaaaaaagttgcaaacctattcaaaaag
aagggttatttaaatttaaaattttgaaatgtgtctacagaaaagacttc
ctgaatagaacactgatatagcacaggctctaaaaacaattaacgtacgg
gacctaatgaaagtgaaaggcttctgtacagaaaagacacaaagcacctg
gctacagaatggggaaagacttttttaaaccaactacacatatactagat
ggcaaatatctaaagtatataaataactaaaaaaaactggacataaaaca
atttaaaattaggtacagatctaagtagaaggttctcaaaagatgaaaca
gaaatggctgagaaacatgtaatgaaatgttcaacatctttagtcatcag
ggaaatgcaaatcaaaactactttgagatctcaccttacactagtcagaa
tggccaagatcaataaaattaatgactgctcattctgacaaggatgtgta
gaacagaaacacgtatccatcgctggtatgtatgcaaatttgaacagcca
ctatggaaatcaatgtggtggttcctcatataccacaagatgcagctata
gcactcttaagcatatatcatgagctttacatattactacaaagacactt
gcttatctgtattcatagttgtcctgttcataaaagccaggaatttggaa
aacagtctagatgttcatgaacagatgaatggataaagagaatgtggtac
atatatatcttggaatatatatcttgtatgtattctgatatgtcctcatg
ctcctttactttgtgaaacatattgttaactgatcatgagatgtctcagc
aacaaagatcttgctagtagtttatcttcccttttattatatacaaacag
ttgtttgaacctgtctcagaactcaaactacctgaagagaacagtgcagt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_110108437_110109521
seq2: B6Ng01-110I13.b_48_1119

seq1  GAATTCTTAATCCTCTCCTATAAGAAGTCTTCTATATTTCCTTGCAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATCCTCTCCTATAAGAAGTCTTCTATATTTCCTTGCAAAAG  50

seq1  TTTTGTTTATTTATTATTGGGACAACCTTAGTTATCAGGAGAAATTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTATTTATTATTGGGACAACCTTAGTTATCAGGAGAAATTTACC  100

seq1  TGCAAGAGAAGCTGGGGAATATAGTATTTTAGTTGGTATGCTCTCCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGAAGCTGGGGAATATAGTATTTTAGTTGGTATGCTCTCCAACA  150

seq1  TACTGATATGAAAAAGAAAAAAAATTAAGCTTGAAAGACTGTTTTAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATATGAAAAAGAAAAAAAATTAAGCTTGAAAGACTGTTTTAATTA  200

seq1  CCAAAGCATTGTTAGAACATCTAGTGATAGCTGATTGGGGATAAATCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCATTGTTAGAACATCTAGTGATAGCTGATTGGGGATAAATCACA  250

seq1  AATATACTGTGAGCAAAGTACTAAGGAACTGGCTTTCACTTTGTATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTGTGAGCAAAGTACTAAGGAACTGGCTTTCACTTTGTATAGAT  300

seq1  AAATAGTTGAAAACATGTCACTGCCCAAAGTCATTCCTTTCTTGTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGAAAACATGTCACTGCCCAAAGTCATTCCTTTCTTGTTGTTT  350

seq1  ATGTACATTGAACTAATGCAATCTGGAGGGTAATGGTTTATGTGTATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATTGAACTAATGCAATCTGGAGGGTAATGGTTTATGTGTATGAA  400

seq1  TGTGTAATACTCTAAGCTTTTTAAATTTTATATCTGGTTCTATAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATACTCTAAGCTTTTTAAATTTTATATCTGGTTCTATAAAAATA  450

seq1  GATTTATAGATTATAGTGATAGAGTTTTTCAAGAGATTTCTAGTATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAGATTATAGTGATAGAGTTTTTCAAGAGATTTCTAGTATGCTT  500

seq1  TTAAGAATGAAACATACCTTATACATTTGAGGAAACCTTTAAAAGTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATGAAACATACCTTATACATTTGAGGAAACCTTTAAAAGTCTAT  550

seq1  ATTGAGTAATTGATAACTGAGTAAGTGTGAATTGTTAGCAGTATGACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTAATTGATAACTGAGTAAGTGTGAATTGTTAGCAGTATGACAAA  600

seq1  GTCTCTGCCGTCACAGTCCCTCTCCAGTCTGCACTGCTCTTGGGCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCCGTCACAGTCCCTCTCCAGTCTGCACTGCTCTTGGGCTTTGG  650

seq1  GAAGAGTGACATATGCAACTCTTCCTTCTTTGTCTGCTTTAATCTTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGACATATGCAACTCTTCCTTCTTTGTCTGCTTTAATCTTACTG  700

seq1  CTTGACCACCAGGTACTATGGAATCCTATCTGATCTCCTTGCCTCTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCACCAGGTACTATGGAATCCTATCTGATCTCCTTGCCTCTTACT  750

seq1  GAATGTTCTTTTACATGTGATTAGCTGTTGGAATTGATGTTTCTATGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCTTTTACATGTGATTAGCTGTTGGAATTGATGTTTCTATGCAA  800

seq1  AGATCACTGAAAGTTTTTTTCTTGCTACCACTTTCTTTGCTTCTCAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTGAAAGTTTTTTTCTTGCTACCACTTTCTTTGCTTCTCAGACA  850

seq1  AAGAACTATAATGCAGAACAAATCCCAAATACAAATTTTTTATCTCACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTATAATGCAGAACAAATCCCAAATACAAATTTTTTATCTCACAG  900

seq1  TTTTAATGTTGTCCATTTCTGTGTGTTAATATAAATTATCAGTATTTATA  950
      |||||||| ||||||||||||||   ||||||||||||||||||||||||
seq2  TTTTAATG-TGTCCATTTCTGTGGTGTAATATAAATTATCAGTATTTATA  949

seq1  GCCTTTCAGATAGCAATTTGGCAGTTCTACCTGGCCGTAATATTAAAATT  1000
      |||||||||||||| ||||||||| ||||||||||||| ||||| |||||
seq2  GCCTTTCAGATAGC-ATTTGGCAG-TCTACCTGGCCGT-ATATT-AAATT  995

seq1  GTGCTCTTTGGTTAAGTTTGGTTAAGTAATTTCTTCTTCTGAAAACCAAG  1050
      |||||||||||| |||||||||| ||| ||||||||||||| ||||||||
seq2  GTGCTCTTTGGTAAAGTTTGGTT-AGT-ATTTCTTCTTCTG-AAACCAAG  1042

seq1  TATAAGGAGAAAATTCCAAGTAAGAAGTCTTAAGA  1085
      ||||| |||||   | ||||||||||| |||||||
seq2  TATAA-GAGAA---TTCAAGTAAGAAG-CTTAAGA  1072

seq1: chr4_110260310_110261431
seq2: B6Ng01-110I13.g_71_1171 (reverse)

seq1  TACTGCACTTGTCTCTTTCAGGTTTTAGTTTTGAGTTTCTGGAGACAGTG  50
      |||||||||  |||| ||||||   ||| |||||| |||| |||||||  
seq2  TACTGCACTGTTCTC-TTCAGG---TAG-TTTGAG-TTCT-GAGACAGGT  43

seq1  TCTAAAAACAACTGTTTGTTAATATTATATAAGGGGAAGATAAACTTACT  100
      ||   ||||||||||||||  |||| ||| || |||||||||||| ||||
seq2  TC---AAACAACTGTTTGT--ATATAATA-AAAGGGAAGATAAAC-TACT  86

seq1  AGCAGATTCTCTGTTTGGCTGAGAACATCTCATGAATTCAGTTTTAACAA  150
      ||||   ||| ||||  |||||| |||||||||||  ||||  |||||||
seq2  AGCAAGATCTTTGTT--GCTGAG-ACATCTCATGA--TCAG--TTAACAA  129

seq1  TATGTTTCACAAAGTAAAAGGAGCATGAAGACATATCAGAATACATACAA  200
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TATGTTTCACAAAGT-AAAGGAGCATGAGGACATATCAGAATACATACAA  178

seq1  GATTATATATTCCAAGATATATATGTACCACATTCTCTTTATCCATTCAT  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-TATATATTCCAAGATATATATGTACCACATTCTCTTTATCCATTCAT  227

seq1  CTGTTCATGAACATCTAGACTGTTT--CCAATTCCTGGCTTTTATGAACA  298
      |||||||||||||||||||||||||  | |||||||||||||||||||||
seq2  CTGTTCATGAACATCTAGACTGTTTTCCAAATTCCTGGCTTTTATGAACA  277

seq1  GGACAACTATGAATACAGATAAGCAAGTGTCTTTGTAGTAATATGTAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTATGAATACAGATAAGCAAGTGTCTTTGTAGTAATATGTAAAG  327

seq1  CTCATGATATATGCTTAAGAGTGCTATAGCTGCATCTTGTGGTATATGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATATATGCTTAAGAGTGCTATAGCTGCATCTTGTGGTATATGAG  377

seq1  GAACCACCACATTGATTTCCATAGTGGCTGTTCAAATTTGCATACATACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACCACATTGATTTCCATAGTGGCTGTTCAAATTTGCATACATACC  427

seq1  AGCGATGGATACGTGTTTCTGTTCTACACATCCTTGTCAGAATGAGCAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATGGATACGTGTTTCTGTTCTACACATCCTTGTCAGAATGAGCAGT  477

seq1  CATTAATTTTATTGATCTTGGCCATTCTGACTAGTGTAAGGTGAGATCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTTATTGATCTTGGCCATTCTGACTAGTGTAAGGTGAGATCTC  527

seq1  AAAGTAGTTTTGATTTGCATTTCCCTGATGACTAAAGATGTTGAACATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTTTTGATTTGCATTTCCCTGATGACTAAAGATGTTGAACATTT  577

seq1  CATTACATGTTTCTCAGCCATTTCTGTTTCATCTTTTGAGAACCTTCTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATGTTTCTCAGCCATTTCTGTTTCATCTTTTGAGAACCTTCTAC  627

seq1  TTAGATCTGTACCTAATTTTAAATTGTTTTATGTCCAGTTTTTTTTAGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCTGTACCTAATTTTAAATTGTTTTATGTCCAGTTTTTTTTAGTT  677

seq1  ATTTATATACTTTAGATATTTGCCATCTAGTATATGTGTAGTTGGTTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATACTTTAGATATTTGCCATCTAGTATATGTGTAGTTGGTTTAA  727

seq1  AAAAGTCTTTCCCCATTCTGTAGCCAGGTGCTTTGTGTCTTTTCTGTACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTTTCCCCATTCTGTAGCCAGGTGCTTTGTGTCTTTTCTGTACA  777

seq1  GAAGCCTTTCACTTTCATTAGGTCCCGTACGTTAATTGTTTTTAGAGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTTCACTTTCATTAGGTCCCGTACGTTAATTGTTTTTAGAGCCT  827

seq1  GTGCTATATCAGTGTTCTATTCAGGAAGTCTTTTCTGTAGACACATTTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATATCAGTGTTCTATTCAGGAAGTCTTTTCTGTAGACACATTTCA  877

seq1  AAATTTTAAATTTAAATAACCCTTCTTTTTGAATAGGTTTGCAACTTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAATTTAAATAACCCTTCTTTTTGAATAGGTTTGCAACTTTTT  927

seq1  TGTTTTTGTTTTTAGCTAAGGTTTTGATAGACAATAAGCTGTGCTTCATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTTAGCTAAGGTTTTGATAGACAATAAGCTGTGCTTCATG  977

seq1  AAGCAAGAATTTTCTGTTTGAGGAAACATTCAGAAGATAGGAATTATCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAATTTTCTGTTTGAGGAAACATTCAGAAGATAGGAATTATCTT  1027

seq1  AAGTCTCAGCACTCAGGAGGCACAGGTAGGTGGATCTGTGAGATCAAGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAGCACTCAGGAGGCACAGGTAGGTGGATCTGTGAGATCAAGGC  1077

seq1  CACTCTGGTCTACAGAGTGAATTC  1122
      ||||||||||||||||||||||||
seq2  CACTCTGGTCTACAGAGTGAATTC  1101