BAC Information

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BAC

Clone NameB6Ng01-110J03
Chromosome4 (Build37)18 (Build37)
Map Location 71,529,010 - 71,530,18580,410,705 - 80,411,146
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039565, LOC100039979, LOC667638, EG667649
Downstream geneTle1, Aldoa-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110J03.bB6Ng01-110J03.g
ACCDH917153DH917154
length1,158968
definitionDH917153|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J03, 5' end.DH917154|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,529,010 - 71,530,185)(80,410,705 - 80,411,146)
sequence
gaattcctatgcatgtaacaattcataccctaaagacaagatataaggat
caatttttatgaacacaatggtttggcaatgacacatttctaaaaggggc
aaaagtccctctaaagttaaccattatggagagaaagaagtgaggcatga
ccagaggaagtagacaggtgtctgaaggcttggagtctcatgaacaattg
ctattgtaatggtttctgtactatttgagctaaagttcagatgtgaatgg
agtcttgttgcatgaactgaattttaccagtttcagcctgaagcattatg
ggacgttcattggagttctgaatgaaaattcactctcaaaccaactatag
tccaggaagttgacatattcaagatttgggcacacagatgctgttagaaa
tgaagcatttcaactgtcctgtcctgtgagacctagtgacagcttatatc
atcaccctctgcaaacagatgtgacctctcattctctctctctctctctc
tctctctctctctctctctctctctctttcctgttcacactctgcctctc
tcctgtttactttcattctccctcattccccatcttgttcattctttgtc
tgtctctaaggacattttgctccccctccccctccgccattaaacctctt
aaactagatcagttgtggtgtaatgtcacagcagggcacgttgtcgtggc
ctaacaaaagtaccccaagtcacactgctttatcctattacttacgagga
gagttatgtttcagttagtcaatgatgaagatgtgcaaggttcaataact
gcatcaaatgaagtccagaactcaaaaaaatatattgaaatcgcaaacag
tgcaaaaattgatataacaattaataaaagtatcaaacaatgtctgggtg
ctacactgaagggcctggtgctagcagcttcagtcagctcactaaaatca
gttctctaatagaccgacaaatgctatgcagatggcttcaagctgaaata
gagacttattgttccattggaaaagaatagctgtcaccttaagaatctaa
gtccctttgcaacaaactctctgaatacctatgagggaatttcttgatta
cgtaggtgaaaacaataattttccatgaacttgtttttaaaaattctcgc
gtttcctt
gaattcagcacaagtagagaggatgaattggacaatgaaggaggccttgg
ccaaattaaccaaattggtggtgactgggtgtccctcctgtcttaacacc
ttatatagggctaggaacacaccctatactttaggactcacctcctttga
gatcttacatgggaggatctctcccatgctgcctaacatccagtctgata
tcttttttttttttgtaaaactaataaaatttattttaaaatatataact
cagtattgacttttttctttttcttgttttgtttttgttttattttgttt
atctatttatttatttgagacaggatttctctgtatagccctggctgtcc
tggaactcactctgtagaccatgctggccttaaactgagaaatctgcctg
cctctgcctcccaagtgctggaattaaaggcatgtgtcaccactgcccag
cttgacattttttaagtaatcaaaataatttgtaatagttaaatgcatct
taaatatacatgaaatcttctgaagctaaaagtaatatgtactcaacctg
tttttaaaatctatttggaatattaaacaggatagaagtagaaaaaaatt
ctcttatgaagtcctctatgaaaggaaattgtgacaagttcttgattaga
cagaaaccattctatctccacgggagaatatgcagcataactgtggcttc
atagattgaactgggtagtgttccttctgtttctactttctggaatagtt
tgaggcgtattggtattaggtcttctttgaaggtctgatagaacgctgcc
ctaaacctgtctgttcctgggattttttttggttgagagacttttaatga
ctgcttcttgttctttaggggttataggactgtgtagatggtttatctga
tcctgatttaactttggtacctgatatctttctagaaatgttcatttcat
cagatttcagtttgttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_71529010_71530185
seq2: B6Ng01-110J03.b_46_1203

seq1  GAATTCCTATGCATGTAACAATTCATACCCTAAAGACAAGATATAAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGCATGTAACAATTCATACCCTAAAGACAAGATATAAGGAT  50

seq1  CAATTTTTATGAACACAATGGTTTGGCAATGACACATTTCTAAAAGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTATGAACACAATGGTTTGGCAATGACACATTTCTAAAAGGGGC  100

seq1  AAAAGTCCCTCTAAAGTTAACCATTATGGAGAGAAAGAAGTGAGGCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCCTCTAAAGTTAACCATTATGGAGAGAAAGAAGTGAGGCATGA  150

seq1  CCAGAGGAAGTAGACAGGTGTCTGAAGGCTTGGAGTCTCATGAACAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAAGTAGACAGGTGTCTGAAGGCTTGGAGTCTCATGAACAATTG  200

seq1  CTATTGTAATGGTTTCTGTACTATTTGAGCTAAAGTTCAGATGTGAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTAATGGTTTCTGTACTATTTGAGCTAAAGTTCAGATGTGAATGG  250

seq1  AGTCTTGTTGCATGAACTGAATTTTACCAGTTTCAGCCTGAAGCATTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGTTGCATGAACTGAATTTTACCAGTTTCAGCCTGAAGCATTATG  300

seq1  GGACGTTCATTGGAGTTCTGAATGAAAATTCACTCTCAAACCAACTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTTCATTGGAGTTCTGAATGAAAATTCACTCTCAAACCAACTATAG  350

seq1  TCCAGGAAGTTGACATATTCAAGATTTGGGCACACAGATGCTGTTAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAAGTTGACATATTCAAGATTTGGGCACACAGATGCTGTTAGAAA  400

seq1  TGAAGCATTTCAACTGTCCTGTCCTGTGAGACCTAGTGACAGCTTATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCATTTCAACTGTCCTGTCCTGTGAGACCTAGTGACAGCTTATATC  450

seq1  ATCACCCTCTGCAAACAGATGTGACCTCTCATTCTCTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTCTGCAAACAGATGTGACCTCTCATTCTCTCTCTCTCTCTCTC  500

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTGTTCACACTCTGCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTGTTCACACTCTGCCTCTC  550

seq1  TCCTGTTTACTTTCATTCTCCCTCATTCCCCATCTTGTTCATTCTTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTACTTTCATTCTCCCTCATTCCCCATCTTGTTCATTCTTTGTC  600

seq1  TGTCTCTAAGGACA-TTTGCTCCCCCTCCCCCTCCGCCATTAAACCTCTT  649
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAAGGACATTTTGCTCCCCCTCCCCCTCCGCCATTAAACCTCTT  650

seq1  AAACTAGATCAGTTGTGGTGTAATGTCACAGCAGGGCACGTTGTCGTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGATCAGTTGTGGTGTAATGTCACAGCAGGGCACGTTGTCGTGGC  700

seq1  CCAACAAAAGTACCCCAAGTCACACTGCTTTATCCTATTACTTACGAGGA  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAAAGTACCCCAAGTCACACTGCTTTATCCTATTACTTACGAGGA  750

seq1  GAGTTATG-TTCAGTTAGTCAATGATGAAGATGTGCAAGGTTCAATAACT  798
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATGTTTCAGTTAGTCAATGATGAAGATGTGCAAGGTTCAATAACT  800

seq1  GCATCAAATGAAGTCCAGAACTCAAAAAAATATATTGAAATCGCAAACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAATGAAGTCCAGAACTCAAAAAAATATATTGAAATCGCAAACAG  850

seq1  TGCAGAAAATTGATATAAACAATTAATAAAAGTTATCAAACAATGTCT-G  897
      |||| ||||||||||| ||||||||||||||| ||||||||||||||| |
seq2  TGCA-AAAATTGATAT-AACAATTAATAAAAG-TATCAAACAATGTCTGG  897

seq1  GTGCTACACTGAA-GGCCTGGTGCCAGCAGCTTCCAGTCAGCTCCACTAA  946
      ||||||||||||| |||||||||| |||||||| ||||||||| ||||||
seq2  GTGCTACACTGAAGGGCCTGGTGCTAGCAGCTT-CAGTCAGCT-CACTAA  945

seq1  AATCAGCTACACTAATAGACCGACAAA-GCTATGCAGAAGGCTTCAAGGC  995
      |||||| | | |||||||||||||||| |||||||||| |||||||| ||
seq2  AATCAG-TTCTCTAATAGACCGACAAATGCTATGCAGATGGCTTCAA-GC  993

seq1  TGAAAATAGGAGACATTATGTTCCATAGGAAAAGAATAGGCTGTCAACTT  1045
      || ||||| ||||| |  |||||||| ||||||||||| ||||||| |||
seq2  TG-AAATA-GAGACTTATTGTTCCATTGGAAAAGAATA-GCTGTCACCTT  1040

seq1  TATAGAATCTAGAGTCACCTTGGAAACAGAC-CTCTGACATACCTATGAG  1094
         |||||||| |||| |||| | |||| || |||||| |||||||||||
seq2  --AAGAATCTA-AGTC-CCTTTGCAACAAACTCTCTGA-ATACCTATGAG  1085

seq1  GGATTTTCTTGATTATGGTAAGTGAAGACGCAATATATTTCCCATTGAAC  1144
      ||| |||||||||||  ||| ||||| |  ||||| |||| ||| |||||
seq2  GGAATTTCTTGATTA-CGTAGGTGAAAA--CAATA-ATTTTCCA-TGAAC  1130

seq1  TTGTTATTTAAGAAAATTCTGGTGTTTTCCTT  1176
      ||||| ||||  |||||||| | | |||||||
seq2  TTGTT-TTTA--AAAATTCTCGCG-TTTCCTT  1158

seq1: chr18_80410705_80411146
seq2: B6Ng01-110J03.g_332_518

seq1  TCTTTTTCTTGTTTTGTTTTGAGACCAGGTTTCTTTTGTTTGTTTGTTTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTCGAGACAGGGTTTCTCTGTAGCCCTGGCTGTCCTGGAACTCACT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTAGACCAGGCAGTGGTGGAGACCGGGTTTCTTTGCATAGCCTACCCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGAACTTACTTTGTAGACTAGGTTGGCCTCGAAACTCAGAGATCTGCCTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCCCACCCTCCACCCATGCTAGGATTAAAGTTGATGCCACCGCCCAGC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TATGTCTGTCTTTATAAGTGGAGCTCTCTTTTTTGTTTTTTGTTTGT---  297
              ||||| |   | |   | | ||| || | |||||||| |   
seq2  --------TCTTTTT--CTTGTTTTGTTTTTGTTTTATTTTGTTTATCTA  40

seq1  TTTGTT--TTTGAGACAGGGTCTCTCTGTATAGCCCTGGCTGTCCTGGTA  345
      ||| ||  ||||||||||| | |||||||||||||||||||||||||| |
seq2  TTTATTTATTTGAGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGGAA  90

seq1  CTCACTGTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCT  395
      |||||| ||||||||| ||||||||| |||| ||||||| ||||||||||
seq2  CTCACTCTGTAGACCATGCTGGCCTTAAACTGAGAAATCTGCCTGCCTCT  140

seq1  GCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCAGCT  442
      |||||||||||||||| ||||||||| || | |||||||||||||||
seq2  GCCTCCCAAGTGCTGGAATTAAAGGCATGTGTCACCACTGCCCAGCT  187